RNA–Protein interactions for RNA: ENST00000353578.8

COL6A3-203, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 5 BASIC

Gene COL6A3, Length 9,963 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-203ENST00000353578 A0A1W2PQD8 194 aa13.81□□□□□ -0.2
COL6A3-203ENST00000353578 N4BP1O75113 896 aaKnown RBP13.81□□□□□ -0.2
COL6A3-203ENST00000353578 ADRM1Q16186 407 aa13.81□□□□□ -0.2
COL6A3-203ENST00000353578 HIBCHQ6NVY1 386 aaPredicted RBP13.81□□□□□ -0.2
COL6A3-203ENST00000353578 SV2BQ7L1I2 683 aa13.81□□□□□ -0.2
COL6A3-203ENST00000353578 FAM13AO94988 1023 aa13.81□□□□□ -0.2
COL6A3-203ENST00000353578 PBKQ96KB5 322 aa13.81□□□□□ -0.2
COL6A3-203ENST00000353578 C6orf50Q9HD87 102 aa13.81□□□□□ -0.2
COL6A3-203ENST00000353578 SESN1Q9Y6P5 492 aa13.81□□□□□ -0.2
COL6A3-203ENST00000353578 MAPKBP1O60336 1514 aa13.81□□□□□ -0.2
COL6A3-203ENST00000353578 HAUS3Q68CZ6 603 aa13.81□□□□□ -0.2
COL6A3-203ENST00000353578 XPO4Q9C0E2 1151 aaKnown RBP13.81□□□□□ -0.2
COL6A3-203ENST00000353578 BOLA2Q9H3K6 86 aa13.81□□□□□ -0.2
COL6A3-203ENST00000353578 ZNF652Q9Y2D9 606 aa13.81□□□□□ -0.2
COL6A3-203ENST00000353578 TROQ12816 1431 aaPredicted RBP13.81□□□□□ -0.2
COL6A3-203ENST00000353578 FLIIQ13045 1269 aa13.81□□□□□ -0.2
COL6A3-203ENST00000353578 STX17P56962 302 aa13.8□□□□□ -0.2
COL6A3-203ENST00000353578 LAMB3Q13751 1172 aa13.8□□□□□ -0.2
COL6A3-203ENST00000353578 METTL24Q5JXM2 366 aa13.8□□□□□ -0.2
COL6A3-203ENST00000353578 SULT6B1Q6IMI4 303 aa13.8□□□□□ -0.2
COL6A3-203ENST00000353578 FBXO38Q6PIJ6 1188 aa13.8□□□□□ -0.2
COL6A3-203ENST00000353578 LCA5Q86VQ0 697 aa13.8□□□□□ -0.2
COL6A3-203ENST00000353578 HORMAD1Q86X24 394 aa13.8□□□□□ -0.2
COL6A3-203ENST00000353578 CCDC138Q96M89 665 aa13.8□□□□□ -0.2
COL6A3-203ENST00000353578 OSBPL1AQ9BXW6 950 aa13.8□□□□□ -0.2
COL6A3-203ENST00000353578 ZNF483Q8TF39 744 aaPredicted RBP13.8□□□□□ -0.2
COL6A3-203ENST00000353578 CEP19Q96LK0 163 aa13.8□□□□□ -0.2
COL6A3-203ENST00000353578 DIS3Q9Y2L1 958 aaKnown RBP13.8□□□□□ -0.2
COL6A3-203ENST00000353578 TADA3O75528 432 aa13.8□□□□□ -0.2
COL6A3-203ENST00000353578 SYCP2LQ5T4T6 812 aa13.8□□□□□ -0.2
COL6A3-203ENST00000353578 ZNF444Q8N0Y2 327 aaPredicted RBP13.8□□□□□ -0.2
COL6A3-203ENST00000353578 POLR3CQ9BUI4 534 aaPredicted RBP13.8□□□□□ -0.2
COL6A3-203ENST00000353578 KIAA2013Q8IYS2 634 aa13.8□□□□□ -0.2
COL6A3-203ENST00000353578 ICA1LQ8NDH6 482 aa13.8□□□□□ -0.2
COL6A3-203ENST00000353578 SH3GL2Q99962 352 aa13.8□□□□□ -0.2
COL6A3-203ENST00000353578 ATP2B2Q01814 1243 aa13.8□□□□□ -0.2
COL6A3-203ENST00000353578 GNPTABQ3T906 1256 aa13.8□□□□□ -0.2
COL6A3-203ENST00000353578 ATG16L1Q676U5 607 aa13.8□□□□□ -0.2
COL6A3-203ENST00000353578 SLC52A1Q9NWF4 448 aa13.8□□□□□ -0.2
COL6A3-203ENST00000353578 RUSC2Q8N2Y8 1516 aa13.8□□□□□ -0.2
COL6A3-203ENST00000353578 EEF1GP26641 437 aaKnown RBP13.8□□□□□ -0.2
COL6A3-203ENST00000353578 DEFA1P59665 94 aa13.8□□□□□ -0.2
COL6A3-203ENST00000353578 DEFA3P59666 94 aa13.8□□□□□ -0.2
COL6A3-203ENST00000353578 NCBP1Q09161 790 aaKnown RBP13.8□□□□□ -0.2
COL6A3-203ENST00000353578 TEKT2Q9UIF3 430 aa13.8□□□□□ -0.2
COL6A3-203ENST00000353578 ABCC2Q92887 1545 aa13.8□□□□□ -0.2
COL6A3-203ENST00000353578 MRPL46Q9H2W6 279 aaKnown RBP13.8□□□□□ -0.2
COL6A3-203ENST00000353578 HNRNPRO43390 633 aaKnown RBP13.79□□□□□ -0.2
COL6A3-203ENST00000353578 MAGEA1P43355 309 aa13.79□□□□□ -0.2
COL6A3-203ENST00000353578 DACT3Q96B18 629 aaPredicted RBP13.79□□□□□ -0.2
COL6A3-203ENST00000353578 ADGRL1O94910 1474 aa13.79□□□□□ -0.2
COL6A3-203ENST00000353578 TATP17735 454 aaPredicted RBP13.79□□□□□ -0.2
COL6A3-203ENST00000353578 CSGALNACT2Q8N6G5 542 aa13.79□□□□□ -0.2
COL6A3-203ENST00000353578 RTEL1-TNFRSF6BF6WH68 1400 aa13.79□□□□□ -0.2
COL6A3-203ENST00000353578 PPWD1Q96BP3 646 aaKnown RBP13.79□□□□□ -0.2
COL6A3-203ENST00000353578 PTPDC1A2A3K4 754 aa13.79□□□□□ -0.2
COL6A3-203ENST00000353578 WDR46O15213 610 aaKnown RBP13.79□□□□□ -0.2
COL6A3-203ENST00000353578 HSPA13P48723 471 aa13.79□□□□□ -0.2
COL6A3-203ENST00000353578 E2F5Q15329 346 aa13.79□□□□□ -0.2
COL6A3-203ENST00000353578 RPS6KA2Q15349 733 aa13.79□□□□□ -0.2
COL6A3-203ENST00000353578 UAP1Q16222 522 aaPredicted RBP13.79□□□□□ -0.2
COL6A3-203ENST00000353578 WDR44Q5JSH3 913 aa13.79□□□□□ -0.2
COL6A3-203ENST00000353578 FAM81BQ96LP2 452 aa13.79□□□□□ -0.2
COL6A3-203ENST00000353578 CDR2Q01850 454 aa13.79□□□□□ -0.2
COL6A3-203ENST00000353578 GUCY1B3Q02153 619 aa13.79□□□□□ -0.2
COL6A3-203ENST00000353578 TEKT1Q969V4 418 aa13.79□□□□□ -0.2
COL6A3-203ENST00000353578 LZTS2Q9BRK4 669 aa13.79□□□□□ -0.2
COL6A3-203ENST00000353578 CAV1Q03135 178 aa13.79□□□□□ -0.2
COL6A3-203ENST00000353578 NNTQ13423 1086 aa13.79□□□□□ -0.2
COL6A3-203ENST00000353578 PALM2Q8IXS6 379 aa13.79□□□□□ -0.2
COL6A3-203ENST00000353578 BSDC1Q9NW68 430 aaPredicted RBP13.79□□□□□ -0.2
COL6A3-203ENST00000353578 TMOD2Q9NZR1 351 aa13.79□□□□□ -0.2
COL6A3-203ENST00000353578 MARCKSP29966 332 aaPredicted RBP13.78□□□□□ -0.2
COL6A3-203ENST00000353578 DHX58Q96C10 678 aa13.78□□□□□ -0.2
COL6A3-203ENST00000353578 CD2APQ9Y5K6 639 aa13.78□□□□□ -0.2
COL6A3-203ENST00000353578 DEXIO95424 95 aa13.78□□□□□ -0.2
COL6A3-203ENST00000353578 KIRREL3Q8IZU9 778 aa13.78□□□□□ -0.2
COL6A3-203ENST00000353578 TRIM11Q96F44 468 aa13.78□□□□□ -0.2
COL6A3-203ENST00000353578 SOS2Q07890 1332 aaPredicted RBP13.78□□□□□ -0.2
COL6A3-203ENST00000353578 H7C1D1 291 aa13.78□□□□□ -0.2
COL6A3-203ENST00000353578 PSMD6Q15008 389 aa13.78□□□□□ -0.2
COL6A3-203ENST00000353578 DAB2IPQ5VWQ8 1189 aa13.78□□□□□ -0.2
COL6A3-203ENST00000353578 NRDE2Q9H7Z3 1164 aa13.78□□□□□ -0.2
COL6A3-203ENST00000353578 MTMR7Q9Y216 660 aa13.78□□□□□ -0.2
COL6A3-203ENST00000353578 SYCP2Q9BX26 1530 aa13.78□□□□□ -0.2
COL6A3-203ENST00000353578 RANBP6O60518 1105 aaKnown RBP13.78□□□□□ -0.2
COL6A3-203ENST00000353578 MRPS15P82914 257 aaKnown RBP13.78□□□□□ -0.2
COL6A3-203ENST00000353578 IFIT1BQ5T764 474 aaKnown RBP13.78□□□□□ -0.2
COL6A3-203ENST00000353578 KRT39Q6A163 491 aa13.78□□□□□ -0.2
COL6A3-203ENST00000353578 CNGB3Q9NQW8 809 aa13.78□□□□□ -0.2
COL6A3-203ENST00000353578 GOLGA8CPA6NN73 597 aa13.78□□□□□ -0.2
COL6A3-203ENST00000353578 STRNO43815 780 aa13.78□□□□□ -0.2
COL6A3-203ENST00000353578 PRPF38AQ8NAV1 312 aaKnown RBP13.78□□□□□ -0.2
COL6A3-203ENST00000353578 PTPRGP23470 1445 aa13.78□□□□□ -0.2
COL6A3-203ENST00000353578 MAP3K5Q99683 1374 aa13.78□□□□□ -0.2
COL6A3-203ENST00000353578 MTX1Q13505 466 aa13.78□□□□□ -0.2
COL6A3-203ENST00000353578 ZNF530Q6P9A1 599 aaPredicted RBP13.78□□□□□ -0.2
COL6A3-203ENST00000353578 TMEM87BQ96K49 555 aa13.78□□□□□ -0.2
COL6A3-203ENST00000353578 EXOC7Q9UPT5 735 aa13.78□□□□□ -0.2
COL6A3-203ENST00000353578 LDHCP07864 332 aa13.78□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 16.1 ms