RNA–Protein interactions for RNA: ENST00000343916.7

COL9A3-201, Transcript of collagen type IX alpha 3 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL9A3, Length 2,485 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-201ENST00000343916 BLIDQ8IZY5 108 aa22.02■■□□□ 1.12
COL9A3-201ENST00000343916 BLZF1Q9H2G9 400 aa22.02■■□□□ 1.12
COL9A3-201ENST00000343916 ZHX1Q9UKY1 873 aaPredicted RBP22.02■■□□□ 1.12
COL9A3-201ENST00000343916 PSDA5PKW4 1024 aaPredicted RBP22.01■■□□□ 1.11
COL9A3-201ENST00000343916 CYTH3O43739 400 aa22.01■■□□□ 1.11
COL9A3-201ENST00000343916 GOLGA8HP0CJ92 632 aa22.01■■□□□ 1.11
COL9A3-201ENST00000343916 GYS1P13807 737 aa22.01■■□□□ 1.11
COL9A3-201ENST00000343916 PPP4CP60510 307 aa22.01■■□□□ 1.11
COL9A3-201ENST00000343916 KIF18AQ8NI77 898 aa22.01■■□□□ 1.11
COL9A3-201ENST00000343916 CPVLQ9H3G5 476 aa22.01■■□□□ 1.11
COL9A3-201ENST00000343916 ZSCAN20P17040 1043 aaPredicted RBP22.01■■□□□ 1.11
COL9A3-201ENST00000343916 CCDC34Q96HJ3 373 aa22.01■■□□□ 1.11
COL9A3-201ENST00000343916 TMX1Q9H3N1 280 aa22.01■■□□□ 1.11
COL9A3-201ENST00000343916 ROBO3Q96MS0 1386 aa22.01■■□□□ 1.11
COL9A3-201ENST00000343916 SERPINB2P05120 415 aa22■■□□□ 1.11
COL9A3-201ENST00000343916 RASA1P20936 1047 aa22■■□□□ 1.11
COL9A3-201ENST00000343916 COBLO75128 1261 aa22■■□□□ 1.11
COL9A3-201ENST00000343916 TRAPPC10P48553 1259 aa22■■□□□ 1.11
COL9A3-201ENST00000343916 DHX8Q14562 1220 aaKnown RBP22■■□□□ 1.11
COL9A3-201ENST00000343916 GRM4Q14833 912 aa22■■□□□ 1.11
COL9A3-201ENST00000343916 SYT10Q6XYQ8 523 aa22■■□□□ 1.11
COL9A3-201ENST00000343916 TMEM47Q9BQJ4 181 aa22■■□□□ 1.11
COL9A3-201ENST00000343916 ZNF215Q9UL58 517 aaPredicted RBP22■■□□□ 1.11
COL9A3-201ENST00000343916 ZBTB22O15209 634 aa21.99■■□□□ 1.11
COL9A3-201ENST00000343916 ERCC5P28715 1186 aaPredicted RBP21.99■■□□□ 1.11
COL9A3-201ENST00000343916 KCNJ6P48051 423 aa21.99■■□□□ 1.11
COL9A3-201ENST00000343916 ADKP55263 362 aaKnown RBP21.99■■□□□ 1.11
COL9A3-201ENST00000343916 E2F4Q16254 413 aa21.99■■□□□ 1.11
COL9A3-201ENST00000343916 CRY2Q49AN0 593 aa21.99■■□□□ 1.11
COL9A3-201ENST00000343916 WWC2Q6AWC2 1192 aa21.99■■□□□ 1.11
COL9A3-201ENST00000343916 ANKS1AQ92625 1134 aa21.99■■□□□ 1.11
COL9A3-201ENST00000343916 NOL12Q9UGY1 213 aaKnown RBP eCLIP21.99■■□□□ 1.115e-11■■□□□ 13
COL9A3-201ENST00000343916 GGA1Q9UJY5 639 aa21.99■■□□□ 1.11
COL9A3-201ENST00000343916 PCDHA4Q9UN74 947 aa21.99■■□□□ 1.11
COL9A3-201ENST00000343916 V9GYY5 206 aaPredicted RBP21.99■■□□□ 1.11
COL9A3-201ENST00000343916 LDHCP07864 332 aa21.99■■□□□ 1.11
COL9A3-201ENST00000343916 CALML3P27482 149 aa21.99■■□□□ 1.11
COL9A3-201ENST00000343916 HEATR3Q7Z4Q2 680 aa21.99■■□□□ 1.11
COL9A3-201ENST00000343916 MTRQ99707 1265 aa21.99■■□□□ 1.11
COL9A3-201ENST00000343916 DMTNQ08495 405 aa21.98■■□□□ 1.11
COL9A3-201ENST00000343916 CUL4BQ13620 913 aa21.98■■□□□ 1.11
COL9A3-201ENST00000343916 MFSD14BQ5SR56 506 aa21.98■■□□□ 1.11
COL9A3-201ENST00000343916 TMEM139Q8IV31 216 aa21.98■■□□□ 1.11
COL9A3-201ENST00000343916 GSDMAQ96QA5 445 aa21.98■■□□□ 1.11
COL9A3-201ENST00000343916 POLLQ9UGP5 575 aa21.98■■□□□ 1.11
COL9A3-201ENST00000343916 ST5P78524 1137 aa21.98■■□□□ 1.11
COL9A3-201ENST00000343916 TBX2Q13207 712 aaPredicted RBP21.98■■□□□ 1.11
COL9A3-201ENST00000343916 SPECC1LQ69YQ0 1117 aa21.98■■□□□ 1.11
COL9A3-201ENST00000343916 C15orf52Q6ZUT6 534 aaKnown RBP21.98■■□□□ 1.11
COL9A3-201ENST00000343916 IQUBQ8NA54 791 aa21.98■■□□□ 1.11
COL9A3-201ENST00000343916 SYNRGQ9UMZ2 1314 aa21.97■■□□□ 1.11
COL9A3-201ENST00000343916 GOLGB1Q14789 3259 aaKnown RBP21.97■■□□□ 1.11
COL9A3-201ENST00000343916 NAV1Q8NEY1 1877 aa21.97■■□□□ 1.11
COL9A3-201ENST00000343916 HOMER1Q86YM7 354 aa21.97■■□□□ 1.11
COL9A3-201ENST00000343916 TEX11Q8IYF3 940 aa21.97■■□□□ 1.11
COL9A3-201ENST00000343916 C4orf32Q8N8J7 132 aa21.97■■□□□ 1.11
COL9A3-201ENST00000343916 PPP1R3GB7ZBB8 358 aa21.97■■□□□ 1.11
COL9A3-201ENST00000343916 CDK8P49336 464 aa21.97■■□□□ 1.11
COL9A3-201ENST00000343916 PDXDC2PQ6P474 469 aa21.97■■□□□ 1.11
COL9A3-201ENST00000343916 KIF2AO00139 706 aaPredicted RBP21.96■■□□□ 1.11
COL9A3-201ENST00000343916 TEX33O43247 280 aa21.96■■□□□ 1.11
COL9A3-201ENST00000343916 ADRA2BP18089 450 aa21.96■■□□□ 1.11
COL9A3-201ENST00000343916 TC2NQ8N9U0 490 aa21.96■■□□□ 1.11
COL9A3-201ENST00000343916 EYA3Q99504 573 aa21.96■■□□□ 1.11
COL9A3-201ENST00000343916 SH3GLB2Q9NR46 395 aa21.96■■□□□ 1.11
COL9A3-201ENST00000343916 TCP11L1Q9NUJ3 509 aa21.96■■□□□ 1.11
COL9A3-201ENST00000343916 GPR75-ASB3A0A0A6YYF3 556 aa21.96■■□□□ 1.11
COL9A3-201ENST00000343916 CCDC194A0A1B0GVG4 234 aa21.96■■□□□ 1.11
COL9A3-201ENST00000343916 M0R2N6 131 aa21.96■■□□□ 1.11
COL9A3-201ENST00000343916 IL1R1P14778 569 aa21.96■■□□□ 1.11
COL9A3-201ENST00000343916 ATP2B4P23634 1241 aa21.96■■□□□ 1.11
COL9A3-201ENST00000343916 NR1I3Q14994 352 aa21.96■■□□□ 1.11
COL9A3-201ENST00000343916 INF2Q27J81 1249 aa21.96■■□□□ 1.11
COL9A3-201ENST00000343916 SPATA1Q5VX52 437 aa21.96■■□□□ 1.11
COL9A3-201ENST00000343916 RBM17Q96I25 401 aaKnown RBP21.96■■□□□ 1.11
COL9A3-201ENST00000343916 PCDHA6Q9UN73 950 aa21.96■■□□□ 1.11
COL9A3-201ENST00000343916 PCDHA8Q9Y5H6 950 aa21.96■■□□□ 1.11
COL9A3-201ENST00000343916 FLT1P17948 1338 aa21.96■■□□□ 1.11
COL9A3-201ENST00000343916 KARSQ15046 597 aaKnown RBP21.95■■□□□ 1.1
COL9A3-201ENST00000343916 APTXQ7Z2E3 356 aaKnown RBP21.95■■□□□ 1.1
COL9A3-201ENST00000343916 PALM3A6NDB9 673 aaPredicted RBP21.95■■□□□ 1.1
COL9A3-201ENST00000343916 PP2D1A8MPX8 630 aa21.95■■□□□ 1.1
COL9A3-201ENST00000343916 GNAQP50148 359 aa21.95■■□□□ 1.1
COL9A3-201ENST00000343916 TBC1D16Q8TBP0 767 aa21.95■■□□□ 1.1
COL9A3-201ENST00000343916 BAG1Q99933 345 aaPredicted RBP21.95■■□□□ 1.1
COL9A3-201ENST00000343916 TMEM60Q9H2L4 133 aa21.95■■□□□ 1.1
COL9A3-201ENST00000343916 CTNND2Q9UQB3 1225 aa21.95■■□□□ 1.1
COL9A3-201ENST00000343916 SNED1Q8TER0 1413 aa21.94■■□□□ 1.1
COL9A3-201ENST00000343916 A0A1B0GTH6 734 aa21.94■■□□□ 1.1
COL9A3-201ENST00000343916 KLRF2D3W0D1 207 aa21.94■■□□□ 1.1
COL9A3-201ENST00000343916 C6orf229H3BNL8 230 aa21.94■■□□□ 1.1
COL9A3-201ENST00000343916 STXBP3O00186 592 aa21.94■■□□□ 1.1
COL9A3-201ENST00000343916 RHBDL3P58872 404 aa21.94■■□□□ 1.1
COL9A3-201ENST00000343916 DDR1Q08345 913 aa21.94■■□□□ 1.1
COL9A3-201ENST00000343916 CDK5RAP2Q96SN8 1893 aa21.94■■□□□ 1.1
COL9A3-201ENST00000343916 ARL6IP4Q66PJ3 421 aaKnown RBP21.94■■□□□ 1.1
COL9A3-201ENST00000343916 USP17L2Q6R6M4 530 aa21.94■■□□□ 1.1
COL9A3-201ENST00000343916 C16orf86Q6ZW13 317 aa21.94■■□□□ 1.1
COL9A3-201ENST00000343916 BARHL2Q9NY43 387 aa21.94■■□□□ 1.1
COL9A3-201ENST00000343916 SYCP1Q15431 976 aa21.93■■□□□ 1.1
Retrieved 100 of 20,778 RNA–protein pairs in 30.2 ms