RNA–Protein interactions for RNA: ENST00000342988.7

SMAD4-201, Transcript of SMAD family member 4, humanhuman

APPRIS P1 TSL 5 BASIC

Gene SMAD4, Length 8,769 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMAD4-201ENST00000342988 SMCO2A6NFE2 343 aa19.28■□□□□ 0.68
SMAD4-201ENST00000342988 F13A1P00488 732 aa19.27■□□□□ 0.68
SMAD4-201ENST00000342988 SEPT2Q15019 361 aa19.27■□□□□ 0.68
SMAD4-201ENST00000342988 DBNLQ9UJU6 430 aaKnown RBP19.27■□□□□ 0.68
SMAD4-201ENST00000342988 MAP3K2Q9Y2U5 619 aa19.27■□□□□ 0.68
SMAD4-201ENST00000342988 NME8Q8N427 588 aa19.27■□□□□ 0.68
SMAD4-201ENST00000342988 PYGMP11217 842 aa19.27■□□□□ 0.68
SMAD4-201ENST00000342988 MRPS15P82914 257 aaKnown RBP19.27■□□□□ 0.68
SMAD4-201ENST00000342988 PLEKHM3Q6ZWE6 761 aa19.27■□□□□ 0.68
SMAD4-201ENST00000342988 TRMT10CQ7L0Y3 403 aaKnown RBP19.27■□□□□ 0.68
SMAD4-201ENST00000342988 ANKRD42Q8N9B4 389 aa19.27■□□□□ 0.68
SMAD4-201ENST00000342988 CHEK2O96017 543 aa19.27■□□□□ 0.68
SMAD4-201ENST00000342988 PAK1Q13153 545 aa19.27■□□□□ 0.68
SMAD4-201ENST00000342988 PGBD1Q96JS3 809 aa19.27■□□□□ 0.68
SMAD4-201ENST00000342988 SESN1Q9Y6P5 492 aa19.27■□□□□ 0.68
SMAD4-201ENST00000342988 GCNT3O95395 438 aa19.27■□□□□ 0.67
SMAD4-201ENST00000342988 KRT33BQ14525 404 aa19.27■□□□□ 0.67
SMAD4-201ENST00000342988 BEGAINQ9BUH8 593 aa19.27■□□□□ 0.67
SMAD4-201ENST00000342988 ING2Q9H160 280 aa19.27■□□□□ 0.67
SMAD4-201ENST00000342988 PUM3Q15397 648 aaKnown RBP19.26■□□□□ 0.67
SMAD4-201ENST00000342988 LONRF2Q1L5Z9 754 aa19.26■□□□□ 0.67
SMAD4-201ENST00000342988 IVNS1ABPQ9Y6Y0 642 aa19.26■□□□□ 0.67
SMAD4-201ENST00000342988 VWA3AA6NCI4 1184 aa19.26■□□□□ 0.67
SMAD4-201ENST00000342988 TRPA1O75762 1119 aa19.26■□□□□ 0.67
SMAD4-201ENST00000342988 ABHD8Q96I13 439 aa19.26■□□□□ 0.67
SMAD4-201ENST00000342988 EEF1GP26641 437 aaKnown RBP19.26■□□□□ 0.67
SMAD4-201ENST00000342988 KIAA2013Q8IYS2 634 aa19.26■□□□□ 0.67
SMAD4-201ENST00000342988 DCLK2Q8N568 766 aa19.26■□□□□ 0.67
SMAD4-201ENST00000342988 GOLGA5Q8TBA6 731 aa19.26■□□□□ 0.67
SMAD4-201ENST00000342988 SETDB2Q96T68 719 aa19.26■□□□□ 0.67
SMAD4-201ENST00000342988 TOP2AP11388 1531 aaKnown RBP19.26■□□□□ 0.67
SMAD4-201ENST00000342988 N4BP1O75113 896 aaKnown RBP19.26■□□□□ 0.67
SMAD4-201ENST00000342988 CSGALNACT2Q8N6G5 542 aa19.26■□□□□ 0.67
SMAD4-201ENST00000342988 UBN1Q9NPG3 1134 aa19.26■□□□□ 0.67
SMAD4-201ENST00000342988 KRT7P08729 469 aa19.26■□□□□ 0.67
SMAD4-201ENST00000342988 DDX5P17844 614 aaKnown RBP19.26■□□□□ 0.67
SMAD4-201ENST00000342988 OTUD6AQ7L8S5 288 aa19.26■□□□□ 0.67
SMAD4-201ENST00000342988 NAF1Q96HR8 494 aaKnown RBP19.26■□□□□ 0.67
SMAD4-201ENST00000342988 PASKQ96RG2 1323 aa19.26■□□□□ 0.67
SMAD4-201ENST00000342988 STX17P56962 302 aa19.26■□□□□ 0.67
SMAD4-201ENST00000342988 PICALMQ13492 652 aa19.26■□□□□ 0.67
SMAD4-201ENST00000342988 NSD3Q9BZ95 1437 aa19.25■□□□□ 0.67
SMAD4-201ENST00000342988 RASGRF2O14827 1237 aa19.25■□□□□ 0.67
SMAD4-201ENST00000342988 BLVRAP53004 296 aa19.25■□□□□ 0.67
SMAD4-201ENST00000342988 TTC22Q5TAA0 569 aa19.25■□□□□ 0.67
SMAD4-201ENST00000342988 SAR1BQ9Y6B6 198 aa19.25■□□□□ 0.67
SMAD4-201ENST00000342988 NPHP3Q7Z494 1330 aa19.25■□□□□ 0.67
SMAD4-201ENST00000342988 SLC9A1P19634 815 aa19.25■□□□□ 0.67
SMAD4-201ENST00000342988 SMYD2Q9NRG4 433 aa19.25■□□□□ 0.67
SMAD4-201ENST00000342988 NSFP46459 744 aaKnown RBP19.25■□□□□ 0.67
SMAD4-201ENST00000342988 MRPS26Q9BYN8 205 aaKnown RBP19.25■□□□□ 0.67
SMAD4-201ENST00000342988 SLC5A4Q9NY91 659 aa19.25■□□□□ 0.67
SMAD4-201ENST00000342988 STMN3Q9NZ72 180 aa19.25■□□□□ 0.67
SMAD4-201ENST00000342988 APBA1Q02410 837 aa19.25■□□□□ 0.67
SMAD4-201ENST00000342988 UTP18Q9Y5J1 556 aaKnown RBP eCLIP19.25■□□□□ 0.67
SMAD4-201ENST00000342988 A6NJR5 290 aa19.25■□□□□ 0.67
SMAD4-201ENST00000342988 KRT19P08727 400 aa19.25■□□□□ 0.67
SMAD4-201ENST00000342988 IPO5O00410 1097 aaKnown RBP19.25■□□□□ 0.67
SMAD4-201ENST00000342988 SLC4A1P02730 911 aa19.25■□□□□ 0.67
SMAD4-201ENST00000342988 SLC8A2Q9UPR5 921 aa19.25■□□□□ 0.67
SMAD4-201ENST00000342988 MRFAP1Q9Y605 127 aa19.25■□□□□ 0.67
SMAD4-201ENST00000342988 PTPREP23469 700 aa19.24■□□□□ 0.67
SMAD4-201ENST00000342988 TMX3Q96JJ7 454 aa19.24■□□□□ 0.67
SMAD4-201ENST00000342988 CABP1Q9NZU7 370 aa19.24■□□□□ 0.67
SMAD4-201ENST00000342988 ARHGAP26Q9UNA1 814 aa19.24■□□□□ 0.67
SMAD4-201ENST00000342988 PSMA3P25788 255 aa19.24■□□□□ 0.67
SMAD4-201ENST00000342988 RCN2Q14257 317 aa19.24■□□□□ 0.67
SMAD4-201ENST00000342988 FBXO2Q9UK22 296 aaPredicted RBP19.24■□□□□ 0.67
SMAD4-201ENST00000342988 KRIT1O00522 736 aa19.24■□□□□ 0.67
SMAD4-201ENST00000342988 ATF2P15336 505 aa19.24■□□□□ 0.67
SMAD4-201ENST00000342988 SAT1P21673 171 aa19.24■□□□□ 0.67
SMAD4-201ENST00000342988 SP4Q02446 784 aa19.24■□□□□ 0.67
SMAD4-201ENST00000342988 PDE4DQ08499 809 aa19.24■□□□□ 0.67
SMAD4-201ENST00000342988 CCDC197Q8NCU1 140 aa19.24■□□□□ 0.67
SMAD4-201ENST00000342988 ZNF280CQ8ND82 737 aa19.24■□□□□ 0.67
SMAD4-201ENST00000342988 ARHGEF1Q92888 912 aaKnown RBP19.24■□□□□ 0.67
SMAD4-201ENST00000342988 FRMD4AQ9P2Q2 1039 aaPredicted RBP19.24■□□□□ 0.67
SMAD4-201ENST00000342988 CREB3O43889 395 aa19.24■□□□□ 0.67
SMAD4-201ENST00000342988 KLHL7Q8IXQ5 586 aa19.24■□□□□ 0.67
SMAD4-201ENST00000342988 TSC22D3Q99576 134 aa19.24■□□□□ 0.67
SMAD4-201ENST00000342988 PSMA4P25789 261 aaKnown RBP19.24■□□□□ 0.67
SMAD4-201ENST00000342988 YARSP54577 528 aaKnown RBP19.24■□□□□ 0.67
SMAD4-201ENST00000342988 TJAP1Q5JTD0 557 aa19.24■□□□□ 0.67
SMAD4-201ENST00000342988 CCHCR1Q8TD31 782 aa19.23■□□□□ 0.67
SMAD4-201ENST00000342988 KDM1AO60341 852 aa19.23■□□□□ 0.67
SMAD4-201ENST00000342988 ANKLE2Q86XL3 938 aa19.23■□□□□ 0.67
SMAD4-201ENST00000342988 KDM3AQ9Y4C1 1321 aa19.23■□□□□ 0.67
SMAD4-201ENST00000342988 FGD6Q6ZV73 1430 aa19.23■□□□□ 0.67
SMAD4-201ENST00000342988 IFNB1P01574 187 aa19.23■□□□□ 0.67
SMAD4-201ENST00000342988 DNM1Q05193 864 aaKnown RBP19.23■□□□□ 0.67
SMAD4-201ENST00000342988 NCAPH2Q6IBW4 605 aa19.23■□□□□ 0.67
SMAD4-201ENST00000342988 DNM3Q9UQ16 869 aa19.23■□□□□ 0.67
SMAD4-201ENST00000342988 KLHL30Q0D2K2 578 aa19.23■□□□□ 0.67
SMAD4-201ENST00000342988 RRS1Q15050 365 aaKnown RBP19.23■□□□□ 0.67
SMAD4-201ENST00000342988 HOXA7P31268 230 aaPredicted RBP19.23■□□□□ 0.67
SMAD4-201ENST00000342988 ZNF219Q9P2Y4 722 aaPredicted RBP19.23■□□□□ 0.67
SMAD4-201ENST00000342988 PMS1P54277 932 aaKnown RBP19.22■□□□□ 0.67
SMAD4-201ENST00000342988 JDP2Q8WYK2 163 aa19.22■□□□□ 0.67
SMAD4-201ENST00000342988 PTK2BQ14289 1009 aa19.22■□□□□ 0.67
SMAD4-201ENST00000342988 ACRBPQ8NEB7 543 aa19.22■□□□□ 0.67
Retrieved 100 of 20,778 RNA–protein pairs in 10.6 ms