RNA–Protein interactions for RNA: ENST00000341485.9

TPM3-208, Transcript of tropomyosin 3, humanhuman

TSL 1 (best) BASIC

Gene TPM3, Length 2,063 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TPM3-208ENST00000341485 hCG_1642624A0A1W2PR95 340 aa17.17■□□□□ 0.34
TPM3-208ENST00000341485 FAM205CA6NFA0 338 aa17.17■□□□□ 0.34
TPM3-208ENST00000341485 PLCD1P51178 756 aa17.17■□□□□ 0.34
TPM3-208ENST00000341485 FANCCQ00597 558 aa17.17■□□□□ 0.34
TPM3-208ENST00000341485 TROAPQ12815 778 aa17.17■□□□□ 0.34
TPM3-208ENST00000341485 TMC6Q7Z403 805 aa17.17■□□□□ 0.34
TPM3-208ENST00000341485 ZNF710Q8N1W2 664 aa17.17■□□□□ 0.34
TPM3-208ENST00000341485 PHF20Q9BVI0 1012 aa17.17■□□□□ 0.34
TPM3-208ENST00000341485 ZNF287Q9HBT7 754 aa17.17■□□□□ 0.34
TPM3-208ENST00000341485 RBM28Q9NW13 759 aaKnown RBP17.17■□□□□ 0.34
TPM3-208ENST00000341485 ZNF646O15015 1829 aaPredicted RBP17.17■□□□□ 0.34
TPM3-208ENST00000341485 FOCADQ5VW36 1801 aa17.17■□□□□ 0.34
TPM3-208ENST00000341485 ATP1A3P13637 1013 aa17.16■□□□□ 0.34
TPM3-208ENST00000341485 ATP2B1P20020 1258 aa17.16■□□□□ 0.34
TPM3-208ENST00000341485 NT5C2P49902 561 aa17.16■□□□□ 0.34
TPM3-208ENST00000341485 HDLBPQ00341 1268 aaKnown RBP17.16■□□□□ 0.34
TPM3-208ENST00000341485 MYL5Q02045 173 aa17.16■□□□□ 0.34
TPM3-208ENST00000341485 NIM1KQ8IY84 436 aa17.16■□□□□ 0.34
TPM3-208ENST00000341485 ZNF579Q8NAF0 562 aaKnown RBP17.16■□□□□ 0.34
TPM3-208ENST00000341485 ZDHHC15Q96MV8 337 aa17.16■□□□□ 0.34
TPM3-208ENST00000341485 MRIQ9BWK5 157 aa17.16■□□□□ 0.34
TPM3-208ENST00000341485 SRPRBQ9Y5M8 271 aaKnown RBP17.16■□□□□ 0.34
TPM3-208ENST00000341485 DDX60LQ5H9U9 1706 aaKnown RBP17.16■□□□□ 0.34
TPM3-208ENST00000341485 DDAH1O94760 285 aa17.16■□□□□ 0.34
TPM3-208ENST00000341485 BMP6P22004 513 aa17.16■□□□□ 0.34
TPM3-208ENST00000341485 EARS2Q5JPH6 523 aaKnown RBP17.16■□□□□ 0.34
TPM3-208ENST00000341485 APOBEC3HQ6NTF7 200 aaKnown RBP17.16■□□□□ 0.34
TPM3-208ENST00000341485 CDC42EP5Q6NZY7 148 aa17.16■□□□□ 0.34
TPM3-208ENST00000341485 ZNF444Q8N0Y2 327 aaPredicted RBP17.16■□□□□ 0.34
TPM3-208ENST00000341485 SERTAD1Q9UHV2 236 aa17.16■□□□□ 0.34
TPM3-208ENST00000341485 V9GY48 417 aaPredicted RBP17.16■□□□□ 0.34
TPM3-208ENST00000341485 POLR2DO15514 142 aaKnown RBP17.15■□□□□ 0.34
TPM3-208ENST00000341485 PRR29P0C7W0 189 aa17.15■□□□□ 0.34
TPM3-208ENST00000341485 CALM1P0DP23 149 aa17.15■□□□□ 0.34
TPM3-208ENST00000341485 CALM2P0DP24 149 aa17.15■□□□□ 0.34
TPM3-208ENST00000341485 CALM3P0DP25 149 aa17.15■□□□□ 0.34
TPM3-208ENST00000341485 PTGER2P43116 358 aa17.15■□□□□ 0.34
TPM3-208ENST00000341485 ARMCX5Q6P1M9 558 aa17.15■□□□□ 0.34
TPM3-208ENST00000341485 TMTC3Q6ZXV5 915 aa17.15■□□□□ 0.34
TPM3-208ENST00000341485 TAOK3Q9H2K8 898 aa17.15■□□□□ 0.34
TPM3-208ENST00000341485 SERPINA10Q9UK55 444 aa17.15■□□□□ 0.34
TPM3-208ENST00000341485 CEP131Q9UPN4 1083 aa17.15■□□□□ 0.34
TPM3-208ENST00000341485 BCS1LQ9Y276 419 aa17.15■□□□□ 0.34
TPM3-208ENST00000341485 BRCA1P38398 1863 aaKnown RBP17.15■□□□□ 0.34
TPM3-208ENST00000341485 MYO3BQ8WXR4 1341 aa17.15■□□□□ 0.34
TPM3-208ENST00000341485 NMT2O60551 498 aa17.14■□□□□ 0.33
TPM3-208ENST00000341485 RAD17O75943 681 aa17.14■□□□□ 0.33
TPM3-208ENST00000341485 XBP1P17861 261 aa17.14■□□□□ 0.33
TPM3-208ENST00000341485 KRT2P35908 639 aa17.14■□□□□ 0.33
TPM3-208ENST00000341485 TFAP4Q01664 338 aa17.14■□□□□ 0.33
TPM3-208ENST00000341485 POSTNQ15063 836 aa17.14■□□□□ 0.33
TPM3-208ENST00000341485 MTERF4Q7Z6M4 381 aaKnown RBP17.14■□□□□ 0.33
TPM3-208ENST00000341485 MAN1B1Q9UKM7 699 aa17.14■□□□□ 0.33
TPM3-208ENST00000341485 PSME4Q14997 1843 aa17.14■□□□□ 0.33
TPM3-208ENST00000341485 CNTNAP5Q8WYK1 1306 aa17.14■□□□□ 0.33
TPM3-208ENST00000341485 TSPY3P0CV98 308 aa17.14■□□□□ 0.33
TPM3-208ENST00000341485 TSPY8P0CW00 308 aa17.14■□□□□ 0.33
TPM3-208ENST00000341485 RSBN1LQ6PCB5 846 aaPredicted RBP17.14■□□□□ 0.33
TPM3-208ENST00000341485 C16orf86Q6ZW13 317 aa17.14■□□□□ 0.33
TPM3-208ENST00000341485 USP49Q70CQ1 688 aa17.14■□□□□ 0.33
TPM3-208ENST00000341485 CCDC150Q8NCX0 1101 aa17.14■□□□□ 0.33
TPM3-208ENST00000341485 DPF2Q92785 391 aa17.14■□□□□ 0.33
TPM3-208ENST00000341485 CSRNP2Q9H175 543 aa17.14■□□□□ 0.33
TPM3-208ENST00000341485 KCND1Q9NSA2 647 aa17.14■□□□□ 0.33
TPM3-208ENST00000341485 MORC2Q9Y6X9 1032 aaPredicted RBP17.14■□□□□ 0.33
TPM3-208ENST00000341485 TRIM75PA6NK02 468 aa17.13■□□□□ 0.33
TPM3-208ENST00000341485 PSMD14O00487 310 aa17.13■□□□□ 0.33
TPM3-208ENST00000341485 CTIFO43310 598 aaKnown RBP17.13■□□□□ 0.33
TPM3-208ENST00000341485 ACTN4O43707 911 aaKnown RBP17.13■□□□□ 0.33
TPM3-208ENST00000341485 NYAP1Q6ZVC0 841 aa17.13■□□□□ 0.33
TPM3-208ENST00000341485 CCAR2Q8N163 923 aaKnown RBP17.13■□□□□ 0.33
TPM3-208ENST00000341485 SLC44A5Q8NCS7 719 aa17.13■□□□□ 0.33
TPM3-208ENST00000341485 DDX4Q9NQI0 724 aaKnown RBP17.13■□□□□ 0.33
TPM3-208ENST00000341485 HOOK1Q9UJC3 728 aaKnown RBP17.13■□□□□ 0.33
TPM3-208ENST00000341485 ZNRF3Q9ULT6 936 aa17.13■□□□□ 0.33
TPM3-208ENST00000341485 CDK8P49336 464 aa17.12■□□□□ 0.33
TPM3-208ENST00000341485 SARSP49591 514 aaKnown RBP17.12■□□□□ 0.33
TPM3-208ENST00000341485 NPY5RQ15761 445 aa17.12■□□□□ 0.33
TPM3-208ENST00000341485 NT5DC1Q5TFE4 455 aa17.12■□□□□ 0.33
TPM3-208ENST00000341485 GRAMD1CQ8IYS0 662 aa17.12■□□□□ 0.33
TPM3-208ENST00000341485 SRBD1Q8N5C6 995 aaKnown RBP17.12■□□□□ 0.33
TPM3-208ENST00000341485 TNFRSF25Q93038 417 aa17.12■□□□□ 0.33
TPM3-208ENST00000341485 PCDHAC2Q9Y5I4 1007 aa17.12■□□□□ 0.33
TPM3-208ENST00000341485 WNT7AO00755 349 aa17.12■□□□□ 0.33
TPM3-208ENST00000341485 CCDC178Q5BJE1 867 aa17.12■□□□□ 0.33
TPM3-208ENST00000341485 NOM1Q5C9Z4 860 aaKnown RBP17.12■□□□□ 0.33
TPM3-208ENST00000341485 CEP135Q66GS9 1140 aa17.12■□□□□ 0.33
TPM3-208ENST00000341485 TRMT1Q9NXH9 659 aaKnown RBP17.12■□□□□ 0.33
TPM3-208ENST00000341485 HDAC9Q9UKV0 1011 aa17.12■□□□□ 0.33
TPM3-208ENST00000341485 COL4A5P29400 1685 aa17.11■□□□□ 0.33
TPM3-208ENST00000341485 HLA-DOAP06340 250 aa17.11■□□□□ 0.33
TPM3-208ENST00000341485 VIL1P09327 827 aaKnown RBP17.11■□□□□ 0.33
TPM3-208ENST00000341485 UBASH3AP57075 661 aa17.11■□□□□ 0.33
TPM3-208ENST00000341485 CFAP100Q494V2 611 aa17.11■□□□□ 0.33
TPM3-208ENST00000341485 PDILTQ8N807 584 aa17.11■□□□□ 0.33
TPM3-208ENST00000341485 JDP2Q8WYK2 163 aa17.11■□□□□ 0.33
TPM3-208ENST00000341485 FANCLQ9NW38 375 aa17.11■□□□□ 0.33
TPM3-208ENST00000341485 PAXBP1Q9Y5B6 917 aa17.11■□□□□ 0.33
TPM3-208ENST00000341485 FER1L6Q2WGJ9 1857 aa17.11■□□□□ 0.33
TPM3-208ENST00000341485 RASA1P20936 1047 aa17.11■□□□□ 0.33
Retrieved 100 of 20,778 RNA–protein pairs in 16.7 ms