RNA–Protein interactions for RNA: ENST00000335508.10

SF3B1-201, Transcript of splicing factor 3b subunit 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SF3B1, Length 6,526 nt, Biotype protein coding, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1-201ENST00000335508 ZNF174Q15697 407 aa7.71□□□□□ -1.17
SF3B1-201ENST00000335508 LPAR1Q92633 364 aa7.71□□□□□ -1.17
SF3B1-201ENST00000335508 A0A1B0GVL5 298 aa7.71□□□□□ -1.18
SF3B1-201ENST00000335508 TCP10L2B9ZVM9 353 aa7.71□□□□□ -1.18
SF3B1-201ENST00000335508 CALRP27797 417 aaKnown RBP7.71□□□□□ -1.18
SF3B1-201ENST00000335508 CYLC1P35663 651 aaPredicted RBP7.71□□□□□ -1.18
SF3B1-201ENST00000335508 CCT6AP40227 531 aaKnown RBP7.71□□□□□ -1.18
SF3B1-201ENST00000335508 HERC4Q5GLZ8 1057 aaPredicted RBP7.71□□□□□ -1.18
SF3B1-201ENST00000335508 ZFYVE27Q5T4F4 411 aa7.71□□□□□ -1.18
SF3B1-201ENST00000335508 SPZ1Q9BXG8 430 aa7.71□□□□□ -1.18
SF3B1-201ENST00000335508 CD2APQ9Y5K6 639 aa7.71□□□□□ -1.18
SF3B1-201ENST00000335508 UBR1Q8IWV7 1749 aa7.71□□□□□ -1.18
SF3B1-201ENST00000335508 GAS7O60861 476 aa7.71□□□□□ -1.18
SF3B1-201ENST00000335508 UBASH3AP57075 661 aa7.71□□□□□ -1.18
SF3B1-201ENST00000335508 CDC37L1Q7L3B6 337 aa7.71□□□□□ -1.18
SF3B1-201ENST00000335508 COL23A1Q86Y22 540 aaPredicted RBP7.71□□□□□ -1.18
SF3B1-201ENST00000335508 TAF4BQ92750 862 aa7.71□□□□□ -1.18
SF3B1-201ENST00000335508 TMEM47Q9BQJ4 181 aa7.71□□□□□ -1.18
SF3B1-201ENST00000335508 AZI2Q9H6S1 392 aa7.71□□□□□ -1.18
SF3B1-201ENST00000335508 TXKP42681 527 aa7.71□□□□□ -1.18
SF3B1-201ENST00000335508 SH3GLB2Q9NR46 395 aa7.71□□□□□ -1.18
SF3B1-201ENST00000335508 FMNL1O95466 1100 aaPredicted RBP7.7□□□□□ -1.18
SF3B1-201ENST00000335508 CNGA4Q8IV77 575 aa7.7□□□□□ -1.18
SF3B1-201ENST00000335508 ATP6V0A1Q93050 837 aa7.7□□□□□ -1.18
SF3B1-201ENST00000335508 ZNF341Q9BYN7 854 aa7.7□□□□□ -1.18
SF3B1-201ENST00000335508 STK17AQ9UEE5 414 aa7.7□□□□□ -1.18
SF3B1-201ENST00000335508 EXOC7Q9UPT5 735 aa7.7□□□□□ -1.18
SF3B1-201ENST00000335508 KIF1AQ12756 1690 aa7.7□□□□□ -1.18
SF3B1-201ENST00000335508 CLRN2A0PK11 232 aa7.7□□□□□ -1.18
SF3B1-201ENST00000335508 ALAS1P13196 640 aa7.7□□□□□ -1.18
SF3B1-201ENST00000335508 ERCC5P28715 1186 aaPredicted RBP7.7□□□□□ -1.18
SF3B1-201ENST00000335508 SCRN1Q12765 414 aa7.7□□□□□ -1.18
SF3B1-201ENST00000335508 TDRD12Q587J7 1177 aaKnown RBP7.7□□□□□ -1.18
SF3B1-201ENST00000335508 ANKRD35Q8N283 1001 aa7.7□□□□□ -1.18
SF3B1-201ENST00000335508 DCAF4Q8WV16 495 aa7.7□□□□□ -1.18
SF3B1-201ENST00000335508 LMBRD1Q9NUN5 540 aa7.7□□□□□ -1.18
SF3B1-201ENST00000335508 KIAA1468Q9P260 1216 aa7.7□□□□□ -1.18
SF3B1-201ENST00000335508 KCNJ14Q9UNX9 436 aa7.7□□□□□ -1.18
SF3B1-201ENST00000335508 CALCRLQ16602 461 aa7.7□□□□□ -1.18
SF3B1-201ENST00000335508 SPC24Q8NBT2 197 aa7.7□□□□□ -1.18
SF3B1-201ENST00000335508 BBXQ8WY36 941 aaPredicted RBP7.7□□□□□ -1.18
SF3B1-201ENST00000335508 KCNB2Q92953 911 aa7.7□□□□□ -1.18
SF3B1-201ENST00000335508 TDRD3Q9H7E2 651 aaKnown RBP7.7□□□□□ -1.18
SF3B1-201ENST00000335508 LUC7L2Q9Y383 392 aaKnown RBP7.7□□□□□ -1.18
SF3B1-201ENST00000335508 PPP6R2O75170 966 aa7.7□□□□□ -1.18
SF3B1-201ENST00000335508 GPSM2P81274 684 aa7.7□□□□□ -1.18
SF3B1-201ENST00000335508 PTPN14Q15678 1187 aa7.7□□□□□ -1.18
SF3B1-201ENST00000335508 ZYXQ15942 572 aaKnown RBP7.7□□□□□ -1.18
SF3B1-201ENST00000335508 GOLGA5Q8TBA6 731 aa7.7□□□□□ -1.18
SF3B1-201ENST00000335508 OSBPL5Q9H0X9 879 aaPredicted RBP7.7□□□□□ -1.18
SF3B1-201ENST00000335508 SALL1Q9NSC2 1324 aa7.7□□□□□ -1.18
SF3B1-201ENST00000335508 NPM3O75607 178 aaKnown RBP7.7□□□□□ -1.18
SF3B1-201ENST00000335508 GH2P01242 217 aa7.7□□□□□ -1.18
SF3B1-201ENST00000335508 SLFN14P0C7P3 912 aa7.7□□□□□ -1.18
SF3B1-201ENST00000335508 LRRC47Q8N1G4 583 aaKnown RBP7.7□□□□□ -1.18
SF3B1-201ENST00000335508 LINC00301Q8NCQ3 95 aa7.7□□□□□ -1.18
SF3B1-201ENST00000335508 DPF2Q92785 391 aa7.7□□□□□ -1.18
SF3B1-201ENST00000335508 IFT74Q96LB3 600 aa7.7□□□□□ -1.18
SF3B1-201ENST00000335508 COL4A3BPQ9Y5P4 624 aa7.7□□□□□ -1.18
SF3B1-201ENST00000335508 ESYT2A0FGR8 921 aa7.69□□□□□ -1.18
SF3B1-201ENST00000335508 F5H6K3 240 aa7.69□□□□□ -1.18
SF3B1-201ENST00000335508 ERLIN1O75477 346 aa7.69□□□□□ -1.18
SF3B1-201ENST00000335508 KLRC3Q07444 240 aa7.69□□□□□ -1.18
SF3B1-201ENST00000335508 KCTD17Q8N5Z5 321 aa7.69□□□□□ -1.18
SF3B1-201ENST00000335508 CNKSR2Q8WXI2 1034 aa7.69□□□□□ -1.18
SF3B1-201ENST00000335508 DNAJC25Q9H1X3 360 aa7.69□□□□□ -1.18
SF3B1-201ENST00000335508 HOXC10Q9NYD6 342 aa7.69□□□□□ -1.18
SF3B1-201ENST00000335508 KIF5CO60282 957 aa7.69□□□□□ -1.18
SF3B1-201ENST00000335508 TUBBP07437 444 aa7.69□□□□□ -1.18
SF3B1-201ENST00000335508 PAFAH1B1P43034 410 aa7.69□□□□□ -1.18
SF3B1-201ENST00000335508 TUBB4BP68371 445 aa7.69□□□□□ -1.18
SF3B1-201ENST00000335508 EXOSC10Q01780 885 aaKnown RBP7.69□□□□□ -1.18
SF3B1-201ENST00000335508 CLEC17AQ6ZS10 378 aa7.69□□□□□ -1.18
SF3B1-201ENST00000335508 GPHNQ9NQX3 736 aaPredicted RBP7.69□□□□□ -1.18
SF3B1-201ENST00000335508 NFE2L3Q9Y4A8 694 aa7.69□□□□□ -1.18
SF3B1-201ENST00000335508 USP17L5A8MUK1 530 aa7.69□□□□□ -1.18
SF3B1-201ENST00000335508 NOP56O00567 594 aaKnown RBP7.69□□□□□ -1.18
SF3B1-201ENST00000335508 ABCD1P33897 745 aa7.69□□□□□ -1.18
SF3B1-201ENST00000335508 R3HDM1Q15032 1099 aaKnown RBP7.69□□□□□ -1.18
SF3B1-201ENST00000335508 ENAHQ8N8S7 591 aaPredicted RBP7.69□□□□□ -1.18
SF3B1-201ENST00000335508 SLC17A8Q8NDX2 589 aa7.69□□□□□ -1.18
SF3B1-201ENST00000335508 GBP3Q9H0R5 595 aa7.69□□□□□ -1.18
SF3B1-201ENST00000335508 ANAPC4Q9UJX5 808 aa7.69□□□□□ -1.18
SF3B1-201ENST00000335508 PCDHB13Q9Y5F0 798 aa7.69□□□□□ -1.18
SF3B1-201ENST00000335508 PNMA6FA0A0J9YX94 578 aa7.69□□□□□ -1.18
SF3B1-201ENST00000335508 USP17L10C9JJH3 530 aa7.69□□□□□ -1.18
SF3B1-201ENST00000335508 STAT2P52630 851 aa7.69□□□□□ -1.18
SF3B1-201ENST00000335508 IFI16Q16666 785 aaKnown RBP7.69□□□□□ -1.18
SF3B1-201ENST00000335508 INF2Q27J81 1249 aa7.69□□□□□ -1.18
SF3B1-201ENST00000335508 CRY2Q49AN0 593 aa7.69□□□□□ -1.18
SF3B1-201ENST00000335508 ANO6Q4KMQ2 910 aa7.69□□□□□ -1.18
SF3B1-201ENST00000335508 ZNF408Q9H9D4 720 aa7.69□□□□□ -1.18
SF3B1-201ENST00000335508 CCPG1Q9ULG6 757 aa7.69□□□□□ -1.18
SF3B1-201ENST00000335508 TRAF5O00463 557 aa7.69□□□□□ -1.18
SF3B1-201ENST00000335508 ADCY5O95622 1261 aa7.69□□□□□ -1.18
SF3B1-201ENST00000335508 MMP1P03956 469 aa7.69□□□□□ -1.18
SF3B1-201ENST00000335508 TRIM14Q14142 442 aa7.69□□□□□ -1.18
SF3B1-201ENST00000335508 ARHGAP30Q7Z6I6 1101 aaPredicted RBP7.69□□□□□ -1.18
SF3B1-201ENST00000335508 UBXN4Q92575 508 aa7.69□□□□□ -1.18
SF3B1-201ENST00000335508 NUP88Q99567 741 aaPredicted RBP7.69□□□□□ -1.18
Retrieved 100 of 20,778 RNA–protein pairs in 24.1 ms