RNA–Protein interactions for RNA: ENST00000318007.9

PDLIM5-202, Transcript of PDZ and LIM domain 5, humanhuman

TSL 1 (best) BASIC

Gene PDLIM5, Length 1,960 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM5-202ENST00000318007 SNAP25P60880 206 aa17.92■□□□□ 0.46
PDLIM5-202ENST00000318007 PAXIP1Q6ZW49 1069 aaPredicted RBP17.92■□□□□ 0.46
PDLIM5-202ENST00000318007 SRBD1Q8N5C6 995 aaKnown RBP17.92■□□□□ 0.46
PDLIM5-202ENST00000318007 SLC26A6Q9BXS9 759 aa17.92■□□□□ 0.46
PDLIM5-202ENST00000318007 VCPKMTQ9H867 229 aa17.92■□□□□ 0.46
PDLIM5-202ENST00000318007 AFG3L2Q9Y4W6 797 aa17.92■□□□□ 0.46
PDLIM5-202ENST00000318007 CALM1P0DP23 149 aa17.91■□□□□ 0.46
PDLIM5-202ENST00000318007 CALM2P0DP24 149 aa17.91■□□□□ 0.46
PDLIM5-202ENST00000318007 CALM3P0DP25 149 aa17.91■□□□□ 0.46
PDLIM5-202ENST00000318007 GJB2P29033 226 aa17.91■□□□□ 0.46
PDLIM5-202ENST00000318007 GJA5P36382 358 aa17.91■□□□□ 0.46
PDLIM5-202ENST00000318007 BACE1P56817 501 aa17.91■□□□□ 0.46
PDLIM5-202ENST00000318007 CUL4AQ13619 759 aa17.91■□□□□ 0.46
PDLIM5-202ENST00000318007 GRM4Q14833 912 aa17.91■□□□□ 0.46
PDLIM5-202ENST00000318007 PPP4R3BQ5MIZ7 849 aa17.91■□□□□ 0.46
PDLIM5-202ENST00000318007 LDLRAD1Q5T700 205 aa17.91■□□□□ 0.46
PDLIM5-202ENST00000318007 ERO1BQ86YB8 467 aa17.91■□□□□ 0.46
PDLIM5-202ENST00000318007 NSUN7Q8NE18 718 aaKnown RBP17.91■□□□□ 0.46
PDLIM5-202ENST00000318007 SH2D4AQ9H788 454 aa17.91■□□□□ 0.46
PDLIM5-202ENST00000318007 EMILIN3Q9NT22 766 aa17.91■□□□□ 0.46
PDLIM5-202ENST00000318007 SMC3Q9UQE7 1217 aa17.91■□□□□ 0.46
PDLIM5-202ENST00000318007 PHIPQ8WWQ0 1821 aa17.91■□□□□ 0.46
PDLIM5-202ENST00000318007 TMEM232C9JQI7 657 aa17.91■□□□□ 0.46
PDLIM5-202ENST00000318007 KIF5BP33176 963 aa17.91■□□□□ 0.46
PDLIM5-202ENST00000318007 AIFM3Q96NN9 605 aa17.91■□□□□ 0.46
PDLIM5-202ENST00000318007 TANGO6Q9C0B7 1094 aa17.91■□□□□ 0.46
PDLIM5-202ENST00000318007 FBXO28Q9NVF7 368 aa17.91■□□□□ 0.46
PDLIM5-202ENST00000318007 TRPM7Q96QT4 1865 aa17.91■□□□□ 0.46
PDLIM5-202ENST00000318007 SPDYE5A6NIY4 337 aa17.9■□□□□ 0.46
PDLIM5-202ENST00000318007 VCAM1P19320 739 aa17.9■□□□□ 0.46
PDLIM5-202ENST00000318007 ZNF543Q08ER8 600 aa17.9■□□□□ 0.46
PDLIM5-202ENST00000318007 GADL1Q6ZQY3 521 aa17.9■□□□□ 0.46
PDLIM5-202ENST00000318007 TMTC3Q6ZXV5 915 aa17.9■□□□□ 0.46
PDLIM5-202ENST00000318007 GMCL1P1Q8NEA9 526 aa17.9■□□□□ 0.46
PDLIM5-202ENST00000318007 RBM46Q8TBY0 533 aaKnown RBP17.9■□□□□ 0.46
PDLIM5-202ENST00000318007 GJB4Q9NTQ9 266 aa17.9■□□□□ 0.46
PDLIM5-202ENST00000318007 ZSCAN21Q9Y5A6 473 aaPredicted RBP17.9■□□□□ 0.46
PDLIM5-202ENST00000318007 BMP3P12645 472 aa17.9■□□□□ 0.46
PDLIM5-202ENST00000318007 NTRK3Q16288 839 aa17.9■□□□□ 0.46
PDLIM5-202ENST00000318007 SLC35G1Q2M3R5 365 aa17.9■□□□□ 0.46
PDLIM5-202ENST00000318007 FOXD4L5Q5VV16 416 aaPredicted RBP17.9■□□□□ 0.46
PDLIM5-202ENST00000318007 SAPCD2Q86UD0 394 aa17.9■□□□□ 0.46
PDLIM5-202ENST00000318007 FOXD4L4Q8WXT5 416 aaPredicted RBP17.9■□□□□ 0.46
PDLIM5-202ENST00000318007 KIAA1683Q9H0B3 1180 aa17.9■□□□□ 0.46
PDLIM5-202ENST00000318007 CCDC196A0A1B0GTZ2 297 aa17.89■□□□□ 0.45
PDLIM5-202ENST00000318007 PALM3A6NDB9 673 aaPredicted RBP17.89■□□□□ 0.45
PDLIM5-202ENST00000318007 CYTH3O43739 400 aa17.89■□□□□ 0.45
PDLIM5-202ENST00000318007 SNHG28P0DPA3 235 aa17.89■□□□□ 0.45
PDLIM5-202ENST00000318007 ZNF157P51786 506 aaPredicted RBP17.89■□□□□ 0.45
PDLIM5-202ENST00000318007 HTRA3P83110 453 aa17.89■□□□□ 0.45
PDLIM5-202ENST00000318007 PPATQ06203 517 aa17.89■□□□□ 0.45
PDLIM5-202ENST00000318007 TREML2Q5T2D2 321 aa17.89■□□□□ 0.45
PDLIM5-202ENST00000318007 KIFC2Q96AC6 838 aa17.89■□□□□ 0.45
PDLIM5-202ENST00000318007 WDR18Q9BV38 432 aa17.89■□□□□ 0.45
PDLIM5-202ENST00000318007 RPAP3Q9H6T3 665 aaPredicted RBP17.89■□□□□ 0.45
PDLIM5-202ENST00000318007 RBM28Q9NW13 759 aaKnown RBP17.89■□□□□ 0.45
PDLIM5-202ENST00000318007 TAL1P17542 331 aaPredicted RBP17.88■□□□□ 0.45
PDLIM5-202ENST00000318007 FKBP1BP68106 108 aa17.88■□□□□ 0.45
PDLIM5-202ENST00000318007 CPLX2Q6PUV4 134 aaKnown RBP17.88■□□□□ 0.45
PDLIM5-202ENST00000318007 GINM1Q9NU53 330 aa17.88■□□□□ 0.45
PDLIM5-202ENST00000318007 V9GY48 417 aaPredicted RBP17.88■□□□□ 0.45
PDLIM5-202ENST00000318007 CNTNAP5Q8WYK1 1306 aa17.88■□□□□ 0.45
PDLIM5-202ENST00000318007 GUCY1B3Q02153 619 aa17.88■□□□□ 0.45
PDLIM5-202ENST00000318007 ASPRV1Q53RT3 343 aa17.88■□□□□ 0.45
PDLIM5-202ENST00000318007 FAM184AQ8NB25 1140 aa17.88■□□□□ 0.45
PDLIM5-202ENST00000318007 DCAF4Q8WV16 495 aa17.88■□□□□ 0.45
PDLIM5-202ENST00000318007 TMOD4Q9NZQ9 345 aa17.88■□□□□ 0.45
PDLIM5-202ENST00000318007 ORC3Q9UBD5 711 aaPredicted RBP17.88■□□□□ 0.45
PDLIM5-202ENST00000318007 FDPSP14324 419 aaKnown RBP17.87■□□□□ 0.45
PDLIM5-202ENST00000318007 SSRP1Q08945 709 aaKnown RBP17.87■□□□□ 0.45
PDLIM5-202ENST00000318007 PKP1Q13835 747 aa17.87■□□□□ 0.45
PDLIM5-202ENST00000318007 ADGRF4Q8IZF3 695 aa17.87■□□□□ 0.45
PDLIM5-202ENST00000318007 IL27Q8NEV9 243 aa17.87■□□□□ 0.45
PDLIM5-202ENST00000318007 GMCL1Q96IK5 515 aa17.87■□□□□ 0.45
PDLIM5-202ENST00000318007 PIGSQ96S52 555 aa17.87■□□□□ 0.45
PDLIM5-202ENST00000318007 TMEM88BA6NKF7 163 aa17.86■□□□□ 0.45
PDLIM5-202ENST00000318007 FLOT1O75955 427 aa17.86■□□□□ 0.45
PDLIM5-202ENST00000318007 STAT2P52630 851 aa17.86■□□□□ 0.45
PDLIM5-202ENST00000318007 USP14P54578 494 aa17.86■□□□□ 0.45
PDLIM5-202ENST00000318007 PPIL2Q13356 520 aa17.86■□□□□ 0.45
PDLIM5-202ENST00000318007 OTUD7BQ6GQQ9 843 aa17.86■□□□□ 0.45
PDLIM5-202ENST00000318007 GPKOWQ92917 476 aaPredicted RBP eCLIP17.86■□□□□ 0.45
PDLIM5-202ENST00000318007 WNK4Q96J92 1243 aa17.86■□□□□ 0.45
PDLIM5-202ENST00000318007 NID2Q14112 1375 aa17.86■□□□□ 0.45
PDLIM5-202ENST00000318007 CDKL5O76039 1030 aa17.86■□□□□ 0.45
PDLIM5-202ENST00000318007 IFNAR1P17181 557 aa17.86■□□□□ 0.45
PDLIM5-202ENST00000318007 RCAN1P53805 252 aa17.86■□□□□ 0.45
PDLIM5-202ENST00000318007 AKAP17AQ02040 695 aaKnown RBP17.86■□□□□ 0.45
PDLIM5-202ENST00000318007 FUT2Q10981 343 aa17.86■□□□□ 0.45
PDLIM5-202ENST00000318007 GPATCH4Q5T3I0 446 aaKnown RBP17.86■□□□□ 0.45
PDLIM5-202ENST00000318007 TRIM22Q8IYM9 498 aa17.86■□□□□ 0.45
PDLIM5-202ENST00000318007 INTS4Q96HW7 963 aaKnown RBP17.85■□□□□ 0.45
PDLIM5-202ENST00000318007 PTPRFP10586 1907 aa17.85■□□□□ 0.45
PDLIM5-202ENST00000318007 PEX10O60683 326 aa17.84■□□□□ 0.45
PDLIM5-202ENST00000318007 FMNL1O95466 1100 aaPredicted RBP17.84■□□□□ 0.45
PDLIM5-202ENST00000318007 CCDC174Q6PII3 467 aa17.84■□□□□ 0.45
PDLIM5-202ENST00000318007 SMARCC2Q8TAQ2 1214 aa17.84■□□□□ 0.45
PDLIM5-202ENST00000318007 LPAR1Q92633 364 aa17.84■□□□□ 0.45
PDLIM5-202ENST00000318007 A0A0G2JLL6 359 aaPredicted RBP17.84■□□□□ 0.45
PDLIM5-202ENST00000318007 VPS37CA5D8V6 355 aaPredicted RBP17.84■□□□□ 0.45
Retrieved 100 of 20,778 RNA–protein pairs in 13.8 ms