RNA–Protein interactions for RNA: ENST00000298260.8

SKA3-201, Transcript of spindle and kinetochore associated complex subunit 3, humanhuman

TSL 2

Gene SKA3, Length 2,803 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3-201ENST00000298260 SCLT1Q96NL6 688 aa15.12■□□□□ 0.01
SKA3-201ENST00000298260 ZIM3Q96PE6 472 aa15.12■□□□□ 0.01
SKA3-201ENST00000298260 MYO1AQ9UBC5 1043 aa15.12■□□□□ 0.01
SKA3-201ENST00000298260 MCM8Q9UJA3 840 aa15.12■□□□□ 0.01
SKA3-201ENST00000298260 RPSAP08865 295 aaKnown RBP15.11■□□□□ 0.01
SKA3-201ENST00000298260 FAM153BP0C7A2 387 aa15.11■□□□□ 0.01
SKA3-201ENST00000298260 RABL6Q3YEC7 729 aaPredicted RBP15.11■□□□□ 0.01
SKA3-201ENST00000298260 FAM153CQ494X1 144 aa15.11■□□□□ 0.01
SKA3-201ENST00000298260 PAPD7Q5XG87 772 aaKnown RBP15.11■□□□□ 0.01
SKA3-201ENST00000298260 CCDC13Q8IYE1 715 aa15.11■□□□□ 0.01
SKA3-201ENST00000298260 FAM153AQ9UHL3 310 aa15.11■□□□□ 0.01
SKA3-201ENST00000298260 GDAQ9Y2T3 454 aa15.11■□□□□ 0.01
SKA3-201ENST00000298260 CPDO75976 1380 aa15.11■□□□□ 0.01
SKA3-201ENST00000298260 KCNJ18B7U540 433 aa15.11■□□□□ 0.01
SKA3-201ENST00000298260 OPLAHO14841 1288 aa15.11■□□□□ 0.01
SKA3-201ENST00000298260 MMP1P03956 469 aa15.11■□□□□ 0.01
SKA3-201ENST00000298260 LSP1P33241 339 aa15.11■□□□□ 0.01
SKA3-201ENST00000298260 SSRP1Q08945 709 aaKnown RBP15.11■□□□□ 0.01
SKA3-201ENST00000298260 KCNJ12Q14500 433 aa15.11■□□□□ 0.01
SKA3-201ENST00000298260 TRADDQ15628 312 aa15.11■□□□□ 0.01
SKA3-201ENST00000298260 TMEM67Q5HYA8 995 aa15.11■□□□□ 0.01
SKA3-201ENST00000298260 RRP12Q5JTH9 1297 aaKnown RBP15.11■□□□□ 0.01
SKA3-201ENST00000298260 NAIF1Q69YI7 327 aaPredicted RBP15.11■□□□□ 0.01
SKA3-201ENST00000298260 TRIML1Q8N9V2 468 aa15.11■□□□□ 0.01
SKA3-201ENST00000298260 MED1Q15648 1581 aaPredicted RBP15.1■□□□□ 0.01
SKA3-201ENST00000298260 MYH13Q9UKX3 1938 aa15.1■□□□□ 0.01
SKA3-201ENST00000298260 C4AP0C0L4 1744 aa15.1■□□□□ 0.01
SKA3-201ENST00000298260 C4BP0C0L5 1744 aa15.1■□□□□ 0.01
SKA3-201ENST00000298260 NCK2O43639 380 aa15.1■□□□□ 0.01
SKA3-201ENST00000298260 KIF1CO43896 1103 aaKnown RBP15.1■□□□□ 0.01
SKA3-201ENST00000298260 PPP1R12BO60237 982 aaPredicted RBP15.1■□□□□ 0.01
SKA3-201ENST00000298260 FECHP22830 423 aa15.1■□□□□ 0.01
SKA3-201ENST00000298260 FOXO4P98177 505 aa15.1■□□□□ 0.01
SKA3-201ENST00000298260 CTDSPL2Q05D32 466 aa15.1■□□□□ 0.01
SKA3-201ENST00000298260 NEDD9Q14511 834 aa15.1■□□□□ 0.01
SKA3-201ENST00000298260 TTF1Q15361 905 aaPredicted RBP15.1■□□□□ 0.01
SKA3-201ENST00000298260 NFRKBQ6P4R8 1299 aa15.1■□□□□ 0.01
SKA3-201ENST00000298260 BRINP3Q76B58 766 aa15.1■□□□□ 0.01
SKA3-201ENST00000298260 CTAGE1Q96RT6 745 aa15.1■□□□□ 0.01
SKA3-201ENST00000298260 RUFY1Q96T51 708 aa15.1■□□□□ 0.01
SKA3-201ENST00000298260 DDX20Q9UHI6 824 aaKnown RBP15.1■□□□□ 0.01
SKA3-201ENST00000298260 RGPD2P0DJD1 1756 aa15.1■□□□□ 0.01
SKA3-201ENST00000298260 TARSL2A2RTX5 802 aaKnown RBP15.1■□□□□ 0.01
SKA3-201ENST00000298260 NKRFO15226 690 aaKnown RBP eCLIP15.1■□□□□ 0.01
SKA3-201ENST00000298260 FSBPO95073 299 aa15.1■□□□□ 0.01
SKA3-201ENST00000298260 PLEKP08567 350 aaPredicted RBP15.1■□□□□ 0.01
SKA3-201ENST00000298260 HPDP32754 393 aaPredicted RBP15.1■□□□□ 0.01
SKA3-201ENST00000298260 NF2P35240 595 aa15.1■□□□□ 0.01
SKA3-201ENST00000298260 GUCY2FP51841 1108 aa15.1■□□□□ 0.01
SKA3-201ENST00000298260 NAP1L1P55209 391 aaKnown RBP15.1■□□□□ 0.01
SKA3-201ENST00000298260 CCDC40Q4G0X9 1142 aa15.1■□□□□ 0.01
SKA3-201ENST00000298260 ZNF790Q6PG37 636 aa15.1■□□□□ 0.01
SKA3-201ENST00000298260 CADPS2Q86UW7 1296 aa15.1■□□□□ 0.01
SKA3-201ENST00000298260 ANKRD13CQ8N6S4 541 aa15.1■□□□□ 0.01
SKA3-201ENST00000298260 IP6K1Q92551 441 aa15.1■□□□□ 0.01
SKA3-201ENST00000298260 HAUS4Q9H6D7 363 aa15.1■□□□□ 0.01
SKA3-201ENST00000298260 MLXIPQ9HAP2 919 aa15.1■□□□□ 0.01
SKA3-201ENST00000298260 PPANQ9NQ55 473 aaKnown RBP15.1■□□□□ 0.01
SKA3-201ENST00000298260 MYH10P35580 1976 aa15.1■□□□□ 0.01
SKA3-201ENST00000298260 HEG1Q9ULI3 1381 aa15.1■□□□□ 0.01
SKA3-201ENST00000298260 PRDM1O75626 825 aa15.09■□□□□ 0.01
SKA3-201ENST00000298260 CDKL5O76039 1030 aa15.09■□□□□ 0.01
SKA3-201ENST00000298260 FAM228AQ86W67 206 aa15.09■□□□□ 0.01
SKA3-201ENST00000298260 CCDC51Q96ER9 411 aa15.09■□□□□ 0.01
SKA3-201ENST00000298260 FAXDC2Q96IV6 333 aa15.09■□□□□ 0.01
SKA3-201ENST00000298260 SLC40A1Q9NP59 571 aa15.09■□□□□ 0.01
SKA3-201ENST00000298260 STRN4Q9NRL3 753 aa15.09■□□□□ 0.01
SKA3-201ENST00000298260 SLAIN2Q9P270 581 aa15.09■□□□□ 0.01
SKA3-201ENST00000298260 CAPN6Q9Y6Q1 641 aa15.09■□□□□ 0.01
SKA3-201ENST00000298260 CHUKO15111 745 aa15.09■□□□□ 0.01
SKA3-201ENST00000298260 MCM3P25205 808 aa15.09■□□□□ 0.01
SKA3-201ENST00000298260 TCP11X2Q5H9J9 407 aa15.09■□□□□ 0.01
SKA3-201ENST00000298260 CEP85LQ5SZL2 805 aa15.09■□□□□ 0.01
SKA3-201ENST00000298260 IQCA1Q86XH1 822 aa15.09■□□□□ 0.01
SKA3-201ENST00000298260 IGDCC4Q8TDY8 1250 aa15.09■□□□□ 0.01
SKA3-201ENST00000298260 ZNF473Q8WTR7 871 aaKnown RBP15.09■□□□□ 0.01
SKA3-201ENST00000298260 IFT81Q8WYA0 676 aa15.09■□□□□ 0.01
SKA3-201ENST00000298260 SHISA4Q96DD7 197 aa15.09■□□□□ 0.01
SKA3-201ENST00000298260 VEZTQ9HBM0 779 aa15.09■□□□□ 0.01
SKA3-201ENST00000298260 SRPRBQ9Y5M8 271 aaKnown RBP15.09■□□□□ 0.01
SKA3-201ENST00000298260 TACC3Q9Y6A5 838 aa15.09■□□□□ 0.01
SKA3-201ENST00000298260 MST1RQ04912 1400 aa15.09■□□□□ 0.01
SKA3-201ENST00000298260 CREG2Q8IUH2 290 aa15.08■□□□□ 0.01
SKA3-201ENST00000298260 NUP133Q8WUM0 1156 aa15.08■□□□□ 0.01
SKA3-201ENST00000298260 CCDC43Q96MW1 224 aaKnown RBP15.08■□□□□ 0.01
SKA3-201ENST00000298260 LY9Q9HBG7 655 aa15.08■□□□□ 0.01
SKA3-201ENST00000298260 GOLGA8KD6RF30 607 aa15.08■□□□□ 0
SKA3-201ENST00000298260 E7EVH7 732 aa15.08■□□□□ 0
SKA3-201ENST00000298260 PMS1P54277 932 aaKnown RBP15.08■□□□□ 0
SKA3-201ENST00000298260 RNASE9P60153 205 aaKnown RBP15.08■□□□□ 0
SKA3-201ENST00000298260 SAFBQ15424 915 aaKnown RBP eCLIP15.08■□□□□ 0
SKA3-201ENST00000298260 ZNF174Q15697 407 aa15.08■□□□□ 0
SKA3-201ENST00000298260 B4GALNT4Q76KP1 1039 aa15.08■□□□□ 0
SKA3-201ENST00000298260 OR8K1Q8NGG5 319 aa15.08■□□□□ 0
SKA3-201ENST00000298260 NELFBQ8WX92 580 aa15.08■□□□□ 0
SKA3-201ENST00000298260 MS4A14Q96JA4 679 aa15.08■□□□□ 0
SKA3-201ENST00000298260 CCT8L2Q96SF2 557 aa15.08■□□□□ 0
SKA3-201ENST00000298260 LUC7L2Q9Y383 392 aaKnown RBP15.08■□□□□ 0
SKA3-201ENST00000298260 ZNF233A6NK53 670 aa15.07■□□□□ 0
SKA3-201ENST00000298260 CDC25CP30307 473 aa15.07■□□□□ 0
Retrieved 100 of 20,778 RNA–protein pairs in 26.1 ms