RNA–Protein interactions for RNA: ENST00000293968.11

CCNF-201, Transcript of cyclin F, humanhuman

TSL 1 (best)

Gene CCNF, Length 4,173 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCNF-201ENST00000293968 RPN1P04843 607 aaKnown RBP16.53■□□□□ 0.24
CCNF-201ENST00000293968 ARHGAP25P42331 645 aa16.53■□□□□ 0.24
CCNF-201ENST00000293968 NAP1L1P55209 391 aaKnown RBP16.53■□□□□ 0.24
CCNF-201ENST00000293968 FAM47AQ5JRC9 791 aa16.53■□□□□ 0.24
CCNF-201ENST00000293968 BMP15O95972 392 aa16.53■□□□□ 0.24
CCNF-201ENST00000293968 PARP1P09874 1014 aaKnown RBP16.53■□□□□ 0.24
CCNF-201ENST00000293968 IDEP14735 1019 aa16.53■□□□□ 0.24
CCNF-201ENST00000293968 IGHMBP2P38935 993 aaKnown RBP16.53■□□□□ 0.24
CCNF-201ENST00000293968 CYP27A1Q02318 531 aa16.53■□□□□ 0.24
CCNF-201ENST00000293968 TTC31Q49AM3 519 aaPredicted RBP16.53■□□□□ 0.24
CCNF-201ENST00000293968 TTC19Q6DKK2 380 aaPredicted RBP16.53■□□□□ 0.24
CCNF-201ENST00000293968 RASGRP4Q8TDF6 673 aa16.53■□□□□ 0.24
CCNF-201ENST00000293968 ZBTB1Q9Y2K1 713 aa16.53■□□□□ 0.24
CCNF-201ENST00000293968 XDHP47989 1333 aa16.53■□□□□ 0.24
CCNF-201ENST00000293968 ZNF185O15231 689 aa16.53■□□□□ 0.24
CCNF-201ENST00000293968 PRCPP42785 496 aa16.53■□□□□ 0.24
CCNF-201ENST00000293968 TUBB4BP68371 445 aa16.53■□□□□ 0.24
CCNF-201ENST00000293968 ENAHQ8N8S7 591 aaPredicted RBP16.53■□□□□ 0.24
CCNF-201ENST00000293968 USP5P45974 858 aa16.52■□□□□ 0.24
CCNF-201ENST00000293968 PLA2G12BQ9BX93 195 aa16.52■□□□□ 0.24
CCNF-201ENST00000293968 B4DLN1 442 aa16.52■□□□□ 0.24
CCNF-201ENST00000293968 NMT2O60551 498 aa16.52■□□□□ 0.24
CCNF-201ENST00000293968 PBX1P40424 430 aa16.52■□□□□ 0.24
CCNF-201ENST00000293968 DYNLL1P63167 89 aaKnown RBP16.52■□□□□ 0.24
CCNF-201ENST00000293968 TRIM28Q13263 835 aaKnown RBP16.52■□□□□ 0.24
CCNF-201ENST00000293968 CCDC96Q2M329 555 aa16.52■□□□□ 0.24
CCNF-201ENST00000293968 SPATA20Q8TB22 786 aa16.52■□□□□ 0.24
CCNF-201ENST00000293968 RMND1Q9NWS8 449 aa16.52■□□□□ 0.24
CCNF-201ENST00000293968 RWDD2AQ9UIY3 292 aa16.52■□□□□ 0.24
CCNF-201ENST00000293968 RGPD5Q99666 1765 aa16.52■□□□□ 0.24
CCNF-201ENST00000293968 EIF3CLB5ME19 914 aaKnown RBP16.52■□□□□ 0.23
CCNF-201ENST00000293968 KRT86O43790 486 aa16.52■□□□□ 0.23
CCNF-201ENST00000293968 MTIF2P46199 727 aaKnown RBP16.52■□□□□ 0.23
CCNF-201ENST00000293968 C2orf54Q08AI8 447 aa16.52■□□□□ 0.23
CCNF-201ENST00000293968 PIGBQ92521 554 aa16.52■□□□□ 0.23
CCNF-201ENST00000293968 EIF3CQ99613 913 aaKnown RBP16.52■□□□□ 0.23
CCNF-201ENST00000293968 GTPBP6O43824 516 aaPredicted RBP16.52■□□□□ 0.23
CCNF-201ENST00000293968 TRIM14Q14142 442 aa16.52■□□□□ 0.23
CCNF-201ENST00000293968 VGLL2Q8N8G2 317 aa16.52■□□□□ 0.23
CCNF-201ENST00000293968 MED4Q9NPJ6 270 aa16.52■□□□□ 0.23
CCNF-201ENST00000293968 PDE4CQ08493 712 aa16.51■□□□□ 0.23
CCNF-201ENST00000293968 NWD2Q9ULI1 1742 aa16.51■□□□□ 0.23
CCNF-201ENST00000293968 UBA7P41226 1012 aa16.51■□□□□ 0.23
CCNF-201ENST00000293968 CCDC178Q5BJE1 867 aa16.51■□□□□ 0.23
CCNF-201ENST00000293968 LRRC31Q6UY01 552 aa16.51■□□□□ 0.23
CCNF-201ENST00000293968 MROH5Q6ZUA9 1318 aa16.51■□□□□ 0.23
CCNF-201ENST00000293968 MICALL1Q8N3F8 863 aa16.51■□□□□ 0.23
CCNF-201ENST00000293968 RUFY1Q96T51 708 aa16.51■□□□□ 0.23
CCNF-201ENST00000293968 PHF20Q9BVI0 1012 aa16.51■□□□□ 0.23
CCNF-201ENST00000293968 DEF6Q9H4E7 631 aa16.51■□□□□ 0.23
CCNF-201ENST00000293968 PP2D1A8MPX8 630 aa16.51■□□□□ 0.23
CCNF-201ENST00000293968 PPARDQ03181 441 aa16.51■□□□□ 0.23
CCNF-201ENST00000293968 PKN1Q16512 942 aa16.51■□□□□ 0.23
CCNF-201ENST00000293968 GPKOWQ92917 476 aaPredicted RBP eCLIP16.51■□□□□ 0.23
CCNF-201ENST00000293968 SHISA4Q96DD7 197 aa16.51■□□□□ 0.23
CCNF-201ENST00000293968 HAUS4Q9H6D7 363 aa16.51■□□□□ 0.23
CCNF-201ENST00000293968 LIMA1Q9UHB6 759 aaKnown RBP16.51■□□□□ 0.23
CCNF-201ENST00000293968 BAZ2BQ9UIF8 2168 aaKnown RBP16.51■□□□□ 0.23
CCNF-201ENST00000293968 GGCXP38435 758 aa16.5■□□□□ 0.23
CCNF-201ENST00000293968 GYG1P46976 350 aa16.5■□□□□ 0.23
CCNF-201ENST00000293968 MYO1AQ9UBC5 1043 aa16.5■□□□□ 0.23
CCNF-201ENST00000293968 JAG2Q9Y219 1238 aa16.5■□□□□ 0.23
CCNF-201ENST00000293968 SEMA3EO15041 775 aa16.5■□□□□ 0.23
CCNF-201ENST00000293968 USP14P54578 494 aa16.5■□□□□ 0.23
CCNF-201ENST00000293968 KRT83P78385 493 aa16.5■□□□□ 0.23
CCNF-201ENST00000293968 TBC1D8BQ0IIM8 1120 aa16.5■□□□□ 0.23
CCNF-201ENST00000293968 SPA17Q15506 151 aa16.5■□□□□ 0.23
CCNF-201ENST00000293968 TUBBP07437 444 aa16.5■□□□□ 0.23
CCNF-201ENST00000293968 MCM3P25205 808 aa16.5■□□□□ 0.23
CCNF-201ENST00000293968 CYLC1P35663 651 aaPredicted RBP16.5■□□□□ 0.23
CCNF-201ENST00000293968 CKAP4Q07065 602 aaKnown RBP16.5■□□□□ 0.23
CCNF-201ENST00000293968 CCDC181Q5TID7 509 aa16.5■□□□□ 0.23
CCNF-201ENST00000293968 ZNF658Q5TYW1 1059 aaPredicted RBP16.5■□□□□ 0.23
CCNF-201ENST00000293968 SND1Q7KZF4 910 aaKnown RBP eCLIP16.5■□□□□ 0.23
CCNF-201ENST00000293968 ZNF512BQ96KM6 892 aaPredicted RBP16.5■□□□□ 0.23
CCNF-201ENST00000293968 MKRN1Q9UHC7 482 aaKnown RBP16.5■□□□□ 0.23
CCNF-201ENST00000293968 WDR17Q8IZU2 1322 aa16.49■□□□□ 0.23
CCNF-201ENST00000293968 GTF2A1P52655 376 aaPredicted RBP16.49■□□□□ 0.23
CCNF-201ENST00000293968 DUSP10Q9Y6W6 482 aa16.49■□□□□ 0.23
CCNF-201ENST00000293968 PSMA7O14818 248 aa16.49■□□□□ 0.23
CCNF-201ENST00000293968 KLK7P49862 253 aa16.49■□□□□ 0.23
CCNF-201ENST00000293968 SH3RF1Q7Z6J0 888 aa16.49■□□□□ 0.23
CCNF-201ENST00000293968 ADGRA1Q86SQ6 560 aa16.49■□□□□ 0.23
CCNF-201ENST00000293968 CSGALNACT2Q8N6G5 542 aa16.49■□□□□ 0.23
CCNF-201ENST00000293968 MB21D1Q8N884 522 aa16.49■□□□□ 0.23
CCNF-201ENST00000293968 FAM76AQ8TAV0 307 aa16.49■□□□□ 0.23
CCNF-201ENST00000293968 CCDC194A0A1B0GVG4 234 aa16.49■□□□□ 0.23
CCNF-201ENST00000293968 GOLGA6CA6NDK9 693 aa16.49■□□□□ 0.23
CCNF-201ENST00000293968 PRPF3O43395 683 aaKnown RBP16.49■□□□□ 0.23
CCNF-201ENST00000293968 GOLGA6DP0CG33 693 aa16.49■□□□□ 0.23
CCNF-201ENST00000293968 SMCR8Q8TEV9 937 aaPredicted RBP16.49■□□□□ 0.23
CCNF-201ENST00000293968 GOLGA6AQ9NYA3 693 aa16.49■□□□□ 0.23
CCNF-201ENST00000293968 USP54Q70EL1 1684 aa16.49■□□□□ 0.23
CCNF-201ENST00000293968 ITIH6Q6UXX5 1313 aa16.49■□□□□ 0.23
CCNF-201ENST00000293968 USP17L12C9JPN9 530 aa16.48■□□□□ 0.23
CCNF-201ENST00000293968 USP17L21D6R901 530 aa16.48■□□□□ 0.23
CCNF-201ENST00000293968 SLC20A2Q08357 652 aa16.48■□□□□ 0.23
CCNF-201ENST00000293968 KIF5AQ12840 1032 aa16.48■□□□□ 0.23
CCNF-201ENST00000293968 AGPAT5Q9NUQ2 364 aa16.48■□□□□ 0.23
CCNF-201ENST00000293968 GOLGA6BA6NDN3 693 aa16.48■□□□□ 0.23
Retrieved 100 of 20,778 RNA–protein pairs in 11.7 ms