RNA–Protein interactions for RNA: ENST00000291074.9

VPS53-201, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS53, Length 2,656 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-201ENST00000291074 GGA1Q9UJY5 639 aa22.83■■□□□ 1.25
VPS53-201ENST00000291074 DDX60LQ5H9U9 1706 aaKnown RBP22.83■■□□□ 1.25
VPS53-201ENST00000291074 LDHCP07864 332 aa22.83■■□□□ 1.24
VPS53-201ENST00000291074 CERKQ8TCT0 537 aa22.83■■□□□ 1.24
VPS53-201ENST00000291074 TMEM47Q9BQJ4 181 aa22.83■■□□□ 1.24
VPS53-201ENST00000291074 BLZF1Q9H2G9 400 aa22.83■■□□□ 1.24
VPS53-201ENST00000291074 ADRA2BP18089 450 aa22.82■■□□□ 1.24
VPS53-201ENST00000291074 CDC25AP30304 524 aa22.82■■□□□ 1.24
VPS53-201ENST00000291074 ST5P78524 1137 aa22.82■■□□□ 1.24
VPS53-201ENST00000291074 ANKRD7Q92527 254 aa22.82■■□□□ 1.24
VPS53-201ENST00000291074 NRDCO43847 1150 aa22.82■■□□□ 1.24
VPS53-201ENST00000291074 TRAPPC10P48553 1259 aa22.82■■□□□ 1.24
VPS53-201ENST00000291074 WWC2Q6AWC2 1192 aa22.82■■□□□ 1.24
VPS53-201ENST00000291074 SNED1Q8TER0 1413 aa22.82■■□□□ 1.24
VPS53-201ENST00000291074 PSDA5PKW4 1024 aaPredicted RBP22.81■■□□□ 1.24
VPS53-201ENST00000291074 E2F4Q16254 413 aa22.81■■□□□ 1.24
VPS53-201ENST00000291074 TEX11Q8IYF3 940 aa22.81■■□□□ 1.24
VPS53-201ENST00000291074 CCDC34Q96HJ3 373 aa22.81■■□□□ 1.24
VPS53-201ENST00000291074 POLLQ9UGP5 575 aa22.81■■□□□ 1.24
VPS53-201ENST00000291074 PCDHA4Q9UN74 947 aa22.81■■□□□ 1.24
VPS53-201ENST00000291074 MYH1P12882 1939 aa22.81■■□□□ 1.24
VPS53-201ENST00000291074 CALML3P27482 149 aa22.81■■□□□ 1.24
VPS53-201ENST00000291074 HEATR3Q7Z4Q2 680 aa22.81■■□□□ 1.24
VPS53-201ENST00000291074 TMX1Q9H3N1 280 aa22.81■■□□□ 1.24
VPS53-201ENST00000291074 COBLO75128 1261 aa22.8■■□□□ 1.24
VPS53-201ENST00000291074 ATP2B4P23634 1241 aa22.8■■□□□ 1.24
VPS53-201ENST00000291074 KCNJ6P48051 423 aa22.8■■□□□ 1.24
VPS53-201ENST00000291074 DDR1Q08345 913 aa22.8■■□□□ 1.24
VPS53-201ENST00000291074 MFSD14BQ5SR56 506 aa22.8■■□□□ 1.24
VPS53-201ENST00000291074 SYNRGQ9UMZ2 1314 aa22.8■■□□□ 1.24
VPS53-201ENST00000291074 IL1R1P14778 569 aa22.8■■□□□ 1.24
VPS53-201ENST00000291074 ERCC5P28715 1186 aaPredicted RBP22.8■■□□□ 1.24
VPS53-201ENST00000291074 CUL4BQ13620 913 aa22.8■■□□□ 1.24
VPS53-201ENST00000291074 DHX8Q14562 1220 aaKnown RBP22.8■■□□□ 1.24
VPS53-201ENST00000291074 KIF18AQ8NI77 898 aa22.8■■□□□ 1.24
VPS53-201ENST00000291074 RBM17Q96I25 401 aaKnown RBP22.8■■□□□ 1.24
VPS53-201ENST00000291074 MTRQ99707 1265 aa22.8■■□□□ 1.24
VPS53-201ENST00000291074 CDK8P49336 464 aa22.79■■□□□ 1.24
VPS53-201ENST00000291074 TBX2Q13207 712 aaPredicted RBP22.79■■□□□ 1.24
VPS53-201ENST00000291074 C4orf32Q8N8J7 132 aa22.79■■□□□ 1.24
VPS53-201ENST00000291074 FLT1P17948 1338 aa22.79■■□□□ 1.24
VPS53-201ENST00000291074 GPR75-ASB3A0A0A6YYF3 556 aa22.79■■□□□ 1.24
VPS53-201ENST00000291074 PDXDC2PQ6P474 469 aa22.79■■□□□ 1.24
VPS53-201ENST00000291074 SYT10Q6XYQ8 523 aa22.79■■□□□ 1.24
VPS53-201ENST00000291074 TMEM139Q8IV31 216 aa22.79■■□□□ 1.24
VPS53-201ENST00000291074 TBC1D16Q8TBP0 767 aa22.79■■□□□ 1.24
VPS53-201ENST00000291074 EYA3Q99504 573 aa22.79■■□□□ 1.24
VPS53-201ENST00000291074 TCP11L1Q9NUJ3 509 aa22.79■■□□□ 1.24
VPS53-201ENST00000291074 GSDMAQ96QA5 445 aa22.78■■□□□ 1.24
VPS53-201ENST00000291074 SH3GLB2Q9NR46 395 aa22.78■■□□□ 1.24
VPS53-201ENST00000291074 PPP1R3GB7ZBB8 358 aa22.78■■□□□ 1.24
VPS53-201ENST00000291074 M0R2N6 131 aa22.78■■□□□ 1.24
VPS53-201ENST00000291074 ADKP55263 362 aaKnown RBP22.78■■□□□ 1.24
VPS53-201ENST00000291074 PDCL2Q8N4E4 241 aa22.78■■□□□ 1.24
VPS53-201ENST00000291074 IQUBQ8NA54 791 aa22.78■■□□□ 1.24
VPS53-201ENST00000291074 ZNF215Q9UL58 517 aaPredicted RBP22.78■■□□□ 1.24
VPS53-201ENST00000291074 PCDHA6Q9UN73 950 aa22.78■■□□□ 1.24
VPS53-201ENST00000291074 PCDHA8Q9Y5H6 950 aa22.78■■□□□ 1.24
VPS53-201ENST00000291074 PALM3A6NDB9 673 aaPredicted RBP22.77■■□□□ 1.24
VPS53-201ENST00000291074 C6orf229H3BNL8 230 aa22.77■■□□□ 1.24
VPS53-201ENST00000291074 GNAQP50148 359 aa22.77■■□□□ 1.24
VPS53-201ENST00000291074 RHBDL3P58872 404 aa22.77■■□□□ 1.24
VPS53-201ENST00000291074 SPECC1LQ69YQ0 1117 aa22.77■■□□□ 1.24
VPS53-201ENST00000291074 NOL12Q9UGY1 213 aaKnown RBP eCLIP22.77■■□□□ 1.24
VPS53-201ENST00000291074 V9GYY5 206 aaPredicted RBP22.77■■□□□ 1.24
VPS53-201ENST00000291074 CCDC194A0A1B0GVG4 234 aa22.77■■□□□ 1.24
VPS53-201ENST00000291074 STXBP3O00186 592 aa22.77■■□□□ 1.24
VPS53-201ENST00000291074 ONECUT3O60422 494 aaPredicted RBP22.77■■□□□ 1.24
VPS53-201ENST00000291074 INF2Q27J81 1249 aa22.77■■□□□ 1.24
VPS53-201ENST00000291074 C16orf86Q6ZW13 317 aa22.77■■□□□ 1.24
VPS53-201ENST00000291074 TEX33O43247 280 aa22.76■■□□□ 1.23
VPS53-201ENST00000291074 KARSQ15046 597 aaKnown RBP22.76■■□□□ 1.23
VPS53-201ENST00000291074 SPATA1Q5VX52 437 aa22.76■■□□□ 1.23
VPS53-201ENST00000291074 APTXQ7Z2E3 356 aaKnown RBP22.76■■□□□ 1.23
VPS53-201ENST00000291074 TMEM60Q9H2L4 133 aa22.76■■□□□ 1.23
VPS53-201ENST00000291074 CTNND2Q9UQB3 1225 aa22.76■■□□□ 1.23
VPS53-201ENST00000291074 PP2D1A8MPX8 630 aa22.76■■□□□ 1.23
VPS53-201ENST00000291074 KLRF2D3W0D1 207 aa22.76■■□□□ 1.23
VPS53-201ENST00000291074 CCDC178Q5BJE1 867 aa22.76■■□□□ 1.23
VPS53-201ENST00000291074 TC2NQ8N9U0 490 aa22.76■■□□□ 1.23
VPS53-201ENST00000291074 KIF2AO00139 706 aaPredicted RBP22.75■■□□□ 1.23
VPS53-201ENST00000291074 IGSF3O75054 1194 aa22.75■■□□□ 1.23
VPS53-201ENST00000291074 NR1I3Q14994 352 aa22.75■■□□□ 1.23
VPS53-201ENST00000291074 BARHL2Q9NY43 387 aa22.75■■□□□ 1.23
VPS53-201ENST00000291074 PPP4R3BQ5MIZ7 849 aa22.75■■□□□ 1.23
VPS53-201ENST00000291074 USP17L2Q6R6M4 530 aa22.75■■□□□ 1.23
VPS53-201ENST00000291074 HOMER1Q86YM7 354 aa22.75■■□□□ 1.23
VPS53-201ENST00000291074 A0A1B0GTH6 734 aa22.75■■□□□ 1.23
VPS53-201ENST00000291074 POLRMTO00411 1230 aaKnown RBP22.74■■□□□ 1.23
VPS53-201ENST00000291074 RIMBP2O15034 1052 aa22.74■■□□□ 1.23
VPS53-201ENST00000291074 BBOX1O75936 387 aa22.74■■□□□ 1.23
VPS53-201ENST00000291074 ARL6IP4Q66PJ3 421 aaKnown RBP22.74■■□□□ 1.23
VPS53-201ENST00000291074 CEP95Q96GE4 821 aa22.74■■□□□ 1.23
VPS53-201ENST00000291074 CCDC94Q9BW85 323 aaPredicted RBP22.74■■□□□ 1.23
VPS53-201ENST00000291074 NT5C2P49902 561 aa22.74■■□□□ 1.23
VPS53-201ENST00000291074 GTF2IP78347 998 aa22.74■■□□□ 1.23
VPS53-201ENST00000291074 CCDC148Q8NFR7 591 aa22.74■■□□□ 1.23
VPS53-201ENST00000291074 BAG1Q99933 345 aaPredicted RBP22.74■■□□□ 1.23
VPS53-201ENST00000291074 PODXL2Q9NZ53 605 aa22.74■■□□□ 1.23
VPS53-201ENST00000291074 LTBP1Q14766 1721 aa22.73■■□□□ 1.23
Retrieved 100 of 20,778 RNA–protein pairs in 28.7 ms