RNA–Protein interactions for RNA: ENST00000278386.10

CD44-203, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 1 (best) BASIC

Gene CD44, Length 484 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-203ENST00000278386 COBLO75128 1261 aa15.28■□□□□ 0.04
CD44-203ENST00000278386 FCER1AP12319 257 aa15.28■□□□□ 0.04
CD44-203ENST00000278386 TDO2P48775 406 aa15.28■□□□□ 0.04
CD44-203ENST00000278386 ATN1P54259 1190 aaPredicted RBP15.28■□□□□ 0.04
CD44-203ENST00000278386 TMEM132BQ14DG7 1078 aa15.28■□□□□ 0.04
CD44-203ENST00000278386 FAM83BQ5T0W9 1011 aa15.28■□□□□ 0.04
CD44-203ENST00000278386 APPBP2Q92624 585 aa15.28■□□□□ 0.04
CD44-203ENST00000278386 STRBPQ96SI9 672 aaKnown RBP15.28■□□□□ 0.04
CD44-203ENST00000278386 UBE2OQ9C0C9 1292 aaKnown RBP15.28■□□□□ 0.04
CD44-203ENST00000278386 MKNK2Q9HBH9 465 aa15.28■□□□□ 0.04
CD44-203ENST00000278386 FBXO28Q9NVF7 368 aa15.28■□□□□ 0.04
CD44-203ENST00000278386 SMCHD1A6NHR9 2005 aa15.27■□□□□ 0.04
CD44-203ENST00000278386 DNAH12Q6ZR08 3092 aa15.27■□□□□ 0.04
CD44-203ENST00000278386 KBTBD13C9JR72 458 aa15.27■□□□□ 0.04
CD44-203ENST00000278386 DNM1LO00429 736 aa15.27■□□□□ 0.04
CD44-203ENST00000278386 RNF113AO15541 343 aaKnown RBP15.27■□□□□ 0.04
CD44-203ENST00000278386 GPAA1O43292 621 aa15.27■□□□□ 0.04
CD44-203ENST00000278386 SLC25A27O95847 323 aa15.27■□□□□ 0.04
CD44-203ENST00000278386 MDM2Q00987 491 aaPredicted RBP15.27■□□□□ 0.04
CD44-203ENST00000278386 GJC2Q5T442 439 aaPredicted RBP15.27■□□□□ 0.04
CD44-203ENST00000278386 TDHQ8IZJ6 230 aa15.27■□□□□ 0.04
CD44-203ENST00000278386 ABRAQ8N0Z2 381 aa15.27■□□□□ 0.04
CD44-203ENST00000278386 OSBP2Q969R2 916 aa15.27■□□□□ 0.04
CD44-203ENST00000278386 MMP19Q99542 508 aa15.27■□□□□ 0.04
CD44-203ENST00000278386 DCTPP1Q9H773 170 aa15.27■□□□□ 0.04
CD44-203ENST00000278386 PPP1R9AQ9ULJ8 1098 aa15.27■□□□□ 0.04
CD44-203ENST00000278386 GSG1L2A8MUP6 293 aa15.26■□□□□ 0.03
CD44-203ENST00000278386 M0R2C6 588 aa15.26■□□□□ 0.03
CD44-203ENST00000278386 SEPT4O43236 478 aa15.26■□□□□ 0.03
CD44-203ENST00000278386 APPP05067 770 aa15.26■□□□□ 0.03
CD44-203ENST00000278386 ZFYP08048 801 aaPredicted RBP15.26■□□□□ 0.03
CD44-203ENST00000278386 KCTD2Q14681 263 aa15.26■□□□□ 0.03
CD44-203ENST00000278386 LRRFIP1Q32MZ4 808 aaKnown RBP15.26■□□□□ 0.03
CD44-203ENST00000278386 SBK1Q52WX2 424 aa15.26■□□□□ 0.03
CD44-203ENST00000278386 GIMAP6Q6P9H5 292 aa15.26■□□□□ 0.03
CD44-203ENST00000278386 MAML3Q96JK9 1138 aa15.26■□□□□ 0.03
CD44-203ENST00000278386 EPB41L4AQ9HCS5 686 aaPredicted RBP15.26■□□□□ 0.03
CD44-203ENST00000278386 MCM3APO60318 1980 aa15.25■□□□□ 0.03
CD44-203ENST00000278386 VWA5AO00534 786 aa15.25■□□□□ 0.03
CD44-203ENST00000278386 GNAT2P19087 354 aa15.25■□□□□ 0.03
CD44-203ENST00000278386 RASA1P20936 1047 aa15.25■□□□□ 0.03
CD44-203ENST00000278386 RTP1P59025 263 aa15.25■□□□□ 0.03
CD44-203ENST00000278386 RIOX2Q8IUF8 465 aa15.25■□□□□ 0.03
CD44-203ENST00000278386 ARRDC4Q8NCT1 418 aa15.25■□□□□ 0.03
CD44-203ENST00000278386 NUP88Q99567 741 aaPredicted RBP15.25■□□□□ 0.03
CD44-203ENST00000278386 PRKAG2Q9UGJ0 569 aa15.25■□□□□ 0.03
CD44-203ENST00000278386 ATP11BQ9Y2G3 1177 aa15.25■□□□□ 0.03
CD44-203ENST00000278386 TTC41PQ6P2S7 1318 aa15.24■□□□□ 0.03
CD44-203ENST00000278386 ERC2O15083 957 aa15.24■□□□□ 0.03
CD44-203ENST00000278386 PRDM1O75626 825 aa15.24■□□□□ 0.03
CD44-203ENST00000278386 IGHA2P01877 340 aa15.24■□□□□ 0.03
CD44-203ENST00000278386 PGK2P07205 417 aa15.24■□□□□ 0.03
CD44-203ENST00000278386 COPB2P35606 906 aa15.24■□□□□ 0.03
CD44-203ENST00000278386 STAT3P40763 770 aa15.24■□□□□ 0.03
CD44-203ENST00000278386 PRAMEF19Q5SWL8 479 aa15.24■□□□□ 0.03
CD44-203ENST00000278386 LBHD1Q9BQE6 289 aaPredicted RBP15.24■□□□□ 0.03
CD44-203ENST00000278386 SLF1Q9BQI6 1058 aa15.24■□□□□ 0.03
CD44-203ENST00000278386 FSD1Q9BTV5 496 aa15.24■□□□□ 0.03
CD44-203ENST00000278386 GNL3Q9BVP2 549 aaKnown RBP eCLIP15.24■□□□□ 0.03
CD44-203ENST00000278386 ZNF287Q9HBT7 754 aa15.24■□□□□ 0.03
CD44-203ENST00000278386 CTDP1Q9Y5B0 961 aaPredicted RBP15.24■□□□□ 0.03
CD44-203ENST00000278386 NDUFB10O96000 172 aa15.23■□□□□ 0.03
CD44-203ENST00000278386 SLC4A3P48751 1232 aa15.23■□□□□ 0.03
CD44-203ENST00000278386 FAM47AQ5JRC9 791 aa15.23■□□□□ 0.03
CD44-203ENST00000278386 SNRNP48Q6IEG0 339 aaKnown RBP15.23■□□□□ 0.03
CD44-203ENST00000278386 PRDM5Q9NQX1 630 aaPredicted RBP15.23■□□□□ 0.03
CD44-203ENST00000278386 NYAP2Q9P242 653 aa15.23■□□□□ 0.03
CD44-203ENST00000278386 ZNF214Q9UL59 606 aaPredicted RBP15.23■□□□□ 0.03
CD44-203ENST00000278386 ISY1Q9ULR0 285 aaKnown RBP15.23■□□□□ 0.03
CD44-203ENST00000278386 ADAMTS5Q9UNA0 930 aa15.23■□□□□ 0.03
CD44-203ENST00000278386 RARBP10826 455 aa15.22■□□□□ 0.03
CD44-203ENST00000278386 LRIT3Q3SXY7 679 aa15.22■□□□□ 0.03
CD44-203ENST00000278386 ZNF444Q8N0Y2 327 aaPredicted RBP15.22■□□□□ 0.03
CD44-203ENST00000278386 LRRC47Q8N1G4 583 aaKnown RBP15.22■□□□□ 0.03
CD44-203ENST00000278386 REPS2Q8NFH8 660 aa15.22■□□□□ 0.03
CD44-203ENST00000278386 TEX13BQ9BXU2 312 aa15.22■□□□□ 0.03
CD44-203ENST00000278386 NACAP1Q9BZK3 213 aa15.22■□□□□ 0.03
CD44-203ENST00000278386 CLIP2Q9UDT6 1046 aa15.22■□□□□ 0.03
CD44-203ENST00000278386 ZBTB47Q9UFB7 747 aaPredicted RBP15.22■□□□□ 0.03
CD44-203ENST00000278386 F5H6K3 240 aa15.21■□□□□ 0.03
CD44-203ENST00000278386 KLRC3Q07444 240 aa15.21■□□□□ 0.03
CD44-203ENST00000278386 LRRC41Q15345 812 aa15.21■□□□□ 0.03
CD44-203ENST00000278386 IFNL3Q8IZI9 196 aa15.21■□□□□ 0.03
CD44-203ENST00000278386 DEFB123Q8N688 67 aa15.21■□□□□ 0.03
CD44-203ENST00000278386 PI4K2BQ8TCG2 481 aa15.21■□□□□ 0.03
CD44-203ENST00000278386 OTUD7AQ8TE49 926 aaPredicted RBP15.21■□□□□ 0.03
CD44-203ENST00000278386 FERMT2Q96AC1 680 aa15.21■□□□□ 0.03
CD44-203ENST00000278386 KIFC2Q96AC6 838 aa15.21■□□□□ 0.03
CD44-203ENST00000278386 CEP95Q96GE4 821 aa15.21■□□□□ 0.03
CD44-203ENST00000278386 SEC62Q99442 399 aaKnown RBP15.21■□□□□ 0.03
CD44-203ENST00000278386 TINF2Q9BSI4 451 aa15.21■□□□□ 0.03
CD44-203ENST00000278386 NAPBQ9H115 298 aa15.21■□□□□ 0.03
CD44-203ENST00000278386 XPNPEP3Q9NQH7 507 aa15.21■□□□□ 0.03
CD44-203ENST00000278386 PCDHB15Q9Y5E8 787 aa15.21■□□□□ 0.03
CD44-203ENST00000278386 PLIN4Q96Q06 1357 aa15.21■□□□□ 0.02
CD44-203ENST00000278386 IGKV6D-41A0A0C4DH26 115 aa15.2■□□□□ 0.02
CD44-203ENST00000278386 PATL2C9JE40 543 aaKnown RBP15.2■□□□□ 0.02
CD44-203ENST00000278386 SLC3A2P08195 630 aaKnown RBP15.2■□□□□ 0.02
CD44-203ENST00000278386 TSPY3P0CV98 308 aa15.2■□□□□ 0.02
CD44-203ENST00000278386 TSPY8P0CW00 308 aa15.2■□□□□ 0.02
Retrieved 100 of 20,778 RNA–protein pairs in 17.7 ms