RNA–Protein interactions for RNA: ENST00000272322.8

VPS54-201, Transcript of VPS54, GARP complex subunit, humanhuman

APPRIS P3 TSL 5 BASIC

Gene VPS54, Length 3,463 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54-201ENST00000272322 NYXQ9GZU5 481 aa18.83■□□□□ 0.6
VPS54-201ENST00000272322 BIN2Q9UBW5 565 aaPredicted RBP18.83■□□□□ 0.6
VPS54-201ENST00000272322 DDX52Q9Y2R4 599 aaKnown RBP eCLIP18.83■□□□□ 0.6
VPS54-201ENST00000272322 AKR1B15C9JRZ8 316 aaPredicted RBP18.82■□□□□ 0.6
VPS54-201ENST00000272322 POLR3GO15318 223 aaPredicted RBP18.82■□□□□ 0.6
VPS54-201ENST00000272322 RAD9BQ6WBX8 426 aa18.82■□□□□ 0.6
VPS54-201ENST00000272322 TMEM139Q8IV31 216 aa18.82■□□□□ 0.6
VPS54-201ENST00000272322 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP18.82■□□□□ 0.6
VPS54-201ENST00000272322 ERICH4A6NGS2 130 aa18.82■□□□□ 0.6
VPS54-201ENST00000272322 CALM1P0DP23 149 aa18.82■□□□□ 0.6
VPS54-201ENST00000272322 CALM2P0DP24 149 aa18.82■□□□□ 0.6
VPS54-201ENST00000272322 CALM3P0DP25 149 aa18.82■□□□□ 0.6
VPS54-201ENST00000272322 BTDP43251 543 aa18.82■□□□□ 0.6
VPS54-201ENST00000272322 NAPAP54920 295 aa18.82■□□□□ 0.6
VPS54-201ENST00000272322 WWC2Q6AWC2 1192 aa18.82■□□□□ 0.6
VPS54-201ENST00000272322 NELFBQ8WX92 580 aa18.82■□□□□ 0.6
VPS54-201ENST00000272322 ATP8A2Q9NTI2 1148 aa18.82■□□□□ 0.6
VPS54-201ENST00000272322 USP21Q9UK80 565 aa18.82■□□□□ 0.6
VPS54-201ENST00000272322 C4AP0C0L4 1744 aa18.82■□□□□ 0.6
VPS54-201ENST00000272322 C4BP0C0L5 1744 aa18.82■□□□□ 0.6
VPS54-201ENST00000272322 MYH15Q9Y2K3 1946 aa18.82■□□□□ 0.6
VPS54-201ENST00000272322 DOT1LQ8TEK3 1739 aa18.82■□□□□ 0.6
VPS54-201ENST00000272322 PPP1R3GB7ZBB8 358 aa18.82■□□□□ 0.6
VPS54-201ENST00000272322 KLRF2D3W0D1 207 aa18.82■□□□□ 0.6
VPS54-201ENST00000272322 TM4SF1P30408 202 aa18.82■□□□□ 0.6
VPS54-201ENST00000272322 KIF5BP33176 963 aa18.82■□□□□ 0.6
VPS54-201ENST00000272322 PFKFB3Q16875 520 aaPredicted RBP18.82■□□□□ 0.6
VPS54-201ENST00000272322 LRRC47Q8N1G4 583 aaKnown RBP18.82■□□□□ 0.6
VPS54-201ENST00000272322 PKNOX2Q96KN3 472 aa18.82■□□□□ 0.6
VPS54-201ENST00000272322 PCMTD1Q96MG8 357 aaPredicted RBP18.82■□□□□ 0.6
VPS54-201ENST00000272322 TMEM47Q9BQJ4 181 aa18.82■□□□□ 0.6
VPS54-201ENST00000272322 ANKRD2Q9GZV1 360 aa18.82■□□□□ 0.6
VPS54-201ENST00000272322 MYH13Q9UKX3 1938 aa18.81■□□□□ 0.6
VPS54-201ENST00000272322 SPATA1Q5VX52 437 aa18.81■□□□□ 0.6
VPS54-201ENST00000272322 TEX11Q8IYF3 940 aa18.81■□□□□ 0.6
VPS54-201ENST00000272322 ZNF397Q8NF99 534 aaPredicted RBP18.81■□□□□ 0.6
VPS54-201ENST00000272322 ZSCAN12O43309 604 aa18.81■□□□□ 0.6
VPS54-201ENST00000272322 CCNT1O60563 726 aaKnown RBP18.81■□□□□ 0.6
VPS54-201ENST00000272322 NR1I3Q14994 352 aa18.81■□□□□ 0.6
VPS54-201ENST00000272322 CCDC178Q5BJE1 867 aa18.81■□□□□ 0.6
VPS54-201ENST00000272322 MFSD14BQ5SR56 506 aa18.81■□□□□ 0.6
VPS54-201ENST00000272322 ARPP21Q9UBL0 812 aaPredicted RBP18.81■□□□□ 0.6
VPS54-201ENST00000272322 PRCPP42785 496 aa18.8■□□□□ 0.6
VPS54-201ENST00000272322 PMS1P54277 932 aaKnown RBP18.8■□□□□ 0.6
VPS54-201ENST00000272322 ATP2C1P98194 919 aaPredicted RBP18.8■□□□□ 0.6
VPS54-201ENST00000272322 FILIP1LQ4L180 1135 aa18.8■□□□□ 0.6
VPS54-201ENST00000272322 C12orf60Q5U649 245 aa18.8■□□□□ 0.6
VPS54-201ENST00000272322 AMOTL1Q8IY63 956 aa18.8■□□□□ 0.6
VPS54-201ENST00000272322 ZNF579Q8NAF0 562 aaKnown RBP18.8■□□□□ 0.6
VPS54-201ENST00000272322 SLF1Q9BQI6 1058 aa18.8■□□□□ 0.6
VPS54-201ENST00000272322 DDAH1O94760 285 aa18.8■□□□□ 0.6
VPS54-201ENST00000272322 TECP42680 631 aa18.8■□□□□ 0.6
VPS54-201ENST00000272322 SCNN1DP51172 638 aa18.8■□□□□ 0.6
VPS54-201ENST00000272322 GPSM2P81274 684 aa18.8■□□□□ 0.6
VPS54-201ENST00000272322 DTHD1Q6ZMT9 781 aa18.8■□□□□ 0.6
VPS54-201ENST00000272322 GPCPD1Q9NPB8 672 aa18.8■□□□□ 0.6
VPS54-201ENST00000272322 ZNF446Q9NWS9 450 aa18.8■□□□□ 0.6
VPS54-201ENST00000272322 TULP1O00294 542 aaPredicted RBP18.8■□□□□ 0.6
VPS54-201ENST00000272322 CLCN6P51797 869 aa18.8■□□□□ 0.6
VPS54-201ENST00000272322 GTF2IP78347 998 aa18.8■□□□□ 0.6
VPS54-201ENST00000272322 UBXN1Q04323 297 aa18.8■□□□□ 0.6
VPS54-201ENST00000272322 KRT31Q15323 416 aa18.8■□□□□ 0.6
VPS54-201ENST00000272322 ZNF569Q5MCW4 686 aa18.8■□□□□ 0.6
VPS54-201ENST00000272322 FERMT2Q96AC1 680 aa18.8■□□□□ 0.6
VPS54-201ENST00000272322 TMEM260Q9NX78 707 aa18.8■□□□□ 0.6
VPS54-201ENST00000272322 SAMD1Q6SPF0 538 aaPredicted RBP18.79■□□□□ 0.6
VPS54-201ENST00000272322 COA7Q96BR5 231 aa18.79■□□□□ 0.6
VPS54-201ENST00000272322 FAM196BA6NMK8 535 aa18.79■□□□□ 0.6
VPS54-201ENST00000272322 MEX3CQ5U5Q3 659 aaKnown RBP18.79■□□□□ 0.6
VPS54-201ENST00000272322 TNFRSF25Q93038 417 aa18.79■□□□□ 0.6
VPS54-201ENST00000272322 EYA3Q99504 573 aa18.79■□□□□ 0.6
VPS54-201ENST00000272322 ABCA3Q99758 1704 aa18.79■□□□□ 0.6
VPS54-201ENST00000272322 TXKP42681 527 aa18.79■□□□□ 0.6
VPS54-201ENST00000272322 TRIM10Q9UDY6 481 aa18.79■□□□□ 0.6
VPS54-201ENST00000272322 FAM170AA1A519 330 aa18.78■□□□□ 0.6
VPS54-201ENST00000272322 KIF2AO00139 706 aaPredicted RBP18.78■□□□□ 0.6
VPS54-201ENST00000272322 BAG3O95817 575 aa18.78■□□□□ 0.6
VPS54-201ENST00000272322 RPN1P04843 607 aaKnown RBP18.78■□□□□ 0.6
VPS54-201ENST00000272322 TXLNAP40222 546 aa18.78■□□□□ 0.6
VPS54-201ENST00000272322 PIGSQ96S52 555 aa18.78■□□□□ 0.6
VPS54-201ENST00000272322 LRRC4BQ9NT99 713 aa18.78■□□□□ 0.6
VPS54-201ENST00000272322 PARP3Q9Y6F1 533 aa18.78■□□□□ 0.6
VPS54-201ENST00000272322 MPHOSPH10O00566 681 aaKnown RBP18.77■□□□□ 0.6
VPS54-201ENST00000272322 NKRFO15226 690 aaKnown RBP eCLIP18.77■□□□□ 0.6
VPS54-201ENST00000272322 CACNB3P54284 484 aa18.77■□□□□ 0.6
VPS54-201ENST00000272322 DOK7Q18PE1 504 aa18.77■□□□□ 0.6
VPS54-201ENST00000272322 DYMQ7RTS9 669 aa18.77■□□□□ 0.6
VPS54-201ENST00000272322 CHP1Q99653 195 aa18.77■□□□□ 0.6
VPS54-201ENST00000272322 SRRTQ9BXP5 876 aaKnown RBP18.77■□□□□ 0.6
VPS54-201ENST00000272322 MAD2L2Q9UI95 211 aa18.77■□□□□ 0.6
VPS54-201ENST00000272322 DDX41Q9UJV9 622 aaKnown RBP18.77■□□□□ 0.6
VPS54-201ENST00000272322 ORC4O43929 436 aa18.77■□□□□ 0.6
VPS54-201ENST00000272322 KRT9P35527 623 aa18.77■□□□□ 0.6
VPS54-201ENST00000272322 PAK1Q13153 545 aa18.77■□□□□ 0.6
VPS54-201ENST00000272322 KIF4BQ2VIQ3 1234 aa18.77■□□□□ 0.6
VPS54-201ENST00000272322 NT5DC1Q5TFE4 455 aa18.77■□□□□ 0.6
VPS54-201ENST00000272322 TRIM47Q96LD4 638 aa18.77■□□□□ 0.6
VPS54-201ENST00000272322 OGFRQ9NZT2 677 aa18.77■□□□□ 0.6
VPS54-201ENST00000272322 ADD3Q9UEY8 706 aaKnown RBP18.77■□□□□ 0.6
VPS54-201ENST00000272322 CICQ96RK0 1608 aaPredicted RBP18.77■□□□□ 0.6
Retrieved 100 of 20,778 RNA–protein pairs in 31 ms