RNA–Protein interactions for RNA: ENST00000641947.1

PHGDH-232, Transcript of phosphoglycerate dehydrogenase, humanhuman

Gene PHGDH, Length 1,774 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PHGDH-232ENST00000641947 LRRC47Q8N1G4 583 aaKnown RBP20.4■□□□□ 0.86
PHGDH-232ENST00000641947 RGS22Q8NE09 1264 aa20.4■□□□□ 0.86
PHGDH-232ENST00000641947 DPF2Q92785 391 aa20.4■□□□□ 0.86
PHGDH-232ENST00000641947 FTOQ9C0B1 505 aaKnown RBP eCLIP20.4■□□□□ 0.86
PHGDH-232ENST00000641947 CNOT7Q9UIV1 285 aaKnown RBP20.4■□□□□ 0.86
PHGDH-232ENST00000641947 V9GY48 417 aaPredicted RBP20.4■□□□□ 0.86
PHGDH-232ENST00000641947 PALM3A6NDB9 673 aaPredicted RBP20.39■□□□□ 0.86
PHGDH-232ENST00000641947 MPHOSPH10O00566 681 aaKnown RBP20.39■□□□□ 0.86
PHGDH-232ENST00000641947 GOLGA8HP0CJ92 632 aa20.39■□□□□ 0.86
PHGDH-232ENST00000641947 KLHL40Q2TBA0 621 aa20.39■□□□□ 0.86
PHGDH-232ENST00000641947 CERKLQ49MI3 558 aaPredicted RBP20.39■□□□□ 0.86
PHGDH-232ENST00000641947 KCNJ14Q9UNX9 436 aa20.39■□□□□ 0.86
PHGDH-232ENST00000641947 DDX49Q9Y6V7 483 aaKnown RBP20.39■□□□□ 0.86
PHGDH-232ENST00000641947 GDF11O95390 407 aa20.39■□□□□ 0.85
PHGDH-232ENST00000641947 VEGFAP15692 232 aaPredicted RBP20.39■□□□□ 0.85
PHGDH-232ENST00000641947 KRT85P78386 507 aa20.39■□□□□ 0.85
PHGDH-232ENST00000641947 TBC1D10BQ4KMP7 808 aaPredicted RBP20.39■□□□□ 0.85
PHGDH-232ENST00000641947 WASF1Q92558 559 aa20.39■□□□□ 0.85
PHGDH-232ENST00000641947 CCDC17Q96LX7 622 aa20.39■□□□□ 0.85
PHGDH-232ENST00000641947 POLR2AP24928 1970 aaKnown RBP20.39■□□□□ 0.85
PHGDH-232ENST00000641947 CYTH3O43739 400 aa20.38■□□□□ 0.85
PHGDH-232ENST00000641947 KIF5BP33176 963 aa20.38■□□□□ 0.85
PHGDH-232ENST00000641947 USP17L2Q6R6M4 530 aa20.38■□□□□ 0.85
PHGDH-232ENST00000641947 FAM83AQ86UY5 434 aa20.38■□□□□ 0.85
PHGDH-232ENST00000641947 GZF1Q9H116 711 aaPredicted RBP20.38■□□□□ 0.85
PHGDH-232ENST00000641947 CPVLQ9H3G5 476 aa20.38■□□□□ 0.85
PHGDH-232ENST00000641947 CLIP2Q9UDT6 1046 aa20.38■□□□□ 0.85
PHGDH-232ENST00000641947 USP17L5A8MUK1 530 aa20.37■□□□□ 0.85
PHGDH-232ENST00000641947 MYO1BO43795 1136 aa20.37■□□□□ 0.85
PHGDH-232ENST00000641947 TTLL1O95922 423 aa20.37■□□□□ 0.85
PHGDH-232ENST00000641947 SKOR2Q2VWA4 1001 aaPredicted RBP20.37■□□□□ 0.85
PHGDH-232ENST00000641947 TRIM34Q9BYJ4 488 aa20.37■□□□□ 0.85
PHGDH-232ENST00000641947 MMP1P03956 469 aa20.36■□□□□ 0.85
PHGDH-232ENST00000641947 PDHBP11177 359 aa20.36■□□□□ 0.85
PHGDH-232ENST00000641947 MMP14P50281 582 aa20.36■□□□□ 0.85
PHGDH-232ENST00000641947 SEPT2Q15019 361 aa20.36■□□□□ 0.85
PHGDH-232ENST00000641947 SIAH1Q8IUQ4 282 aa20.36■□□□□ 0.85
PHGDH-232ENST00000641947 PIBF1Q8WXW3 757 aa20.36■□□□□ 0.85
PHGDH-232ENST00000641947 USP28Q96RU2 1077 aa20.36■□□□□ 0.85
PHGDH-232ENST00000641947 VPS54Q9P1Q0 977 aa20.36■□□□□ 0.85
PHGDH-232ENST00000641947 LEO1Q8WVC0 666 aaPredicted RBP20.36■□□□□ 0.85
PHGDH-232ENST00000641947 HERC5Q9UII4 1024 aaKnown RBP20.36■□□□□ 0.85
PHGDH-232ENST00000641947 SNHG28P0DPA3 235 aa20.35■□□□□ 0.85
PHGDH-232ENST00000641947 TRIM29Q14134 588 aa20.35■□□□□ 0.85
PHGDH-232ENST00000641947 KIF4BQ2VIQ3 1234 aa20.35■□□□□ 0.85
PHGDH-232ENST00000641947 XPO5Q9HAV4 1204 aaKnown RBP eCLIP20.35■□□□□ 0.852e-7■■■■□ 19.6
PHGDH-232ENST00000641947 PARP1P09874 1014 aaKnown RBP20.34■□□□□ 0.85
PHGDH-232ENST00000641947 U2AF2P26368 475 aaKnown RBP eCLIP20.34■□□□□ 0.854e-10■■□□□ 11.5
PHGDH-232ENST00000641947 AKAP17AQ02040 695 aaKnown RBP20.34■□□□□ 0.85
PHGDH-232ENST00000641947 CEBPZQ03701 1054 aaKnown RBP20.34■□□□□ 0.85
PHGDH-232ENST00000641947 ABCB5Q2M3G0 1257 aa20.34■□□□□ 0.85
PHGDH-232ENST00000641947 MYSM1Q5VVJ2 828 aa20.34■□□□□ 0.85
PHGDH-232ENST00000641947 TRPM4Q8TD43 1214 aa20.34■□□□□ 0.85
PHGDH-232ENST00000641947 TEPSINQ96N21 525 aa20.34■□□□□ 0.85
PHGDH-232ENST00000641947 RBM27Q9P2N5 1060 aaKnown RBP20.34■□□□□ 0.85
PHGDH-232ENST00000641947 ELP1O95163 1332 aa20.34■□□□□ 0.85
PHGDH-232ENST00000641947 BTBD18B2RXH4 712 aa20.34■□□□□ 0.85
PHGDH-232ENST00000641947 KLRF2D3W0D1 207 aa20.34■□□□□ 0.85
PHGDH-232ENST00000641947 GH2P01242 217 aa20.34■□□□□ 0.85
PHGDH-232ENST00000641947 EEF2P13639 858 aaKnown RBP20.34■□□□□ 0.85
PHGDH-232ENST00000641947 ATP2B2Q01814 1243 aa20.34■□□□□ 0.85
PHGDH-232ENST00000641947 RASA3Q14644 834 aa20.34■□□□□ 0.85
PHGDH-232ENST00000641947 NPY5RQ15761 445 aa20.34■□□□□ 0.85
PHGDH-232ENST00000641947 PFKFB3Q16875 520 aaPredicted RBP20.34■□□□□ 0.85
PHGDH-232ENST00000641947 TPRNQ4KMQ1 711 aa20.34■□□□□ 0.85
PHGDH-232ENST00000641947 TMEM179Q6ZVK1 233 aa20.34■□□□□ 0.85
PHGDH-232ENST00000641947 BRAPQ7Z569 592 aa20.34■□□□□ 0.85
PHGDH-232ENST00000641947 GPC2Q8N158 579 aa20.34■□□□□ 0.85
PHGDH-232ENST00000641947 OXER1Q8TDS5 423 aa20.34■□□□□ 0.85
PHGDH-232ENST00000641947 SPATA32Q96LK8 384 aa20.34■□□□□ 0.85
PHGDH-232ENST00000641947 GPRC5DQ9NZD1 345 aa20.34■□□□□ 0.85
PHGDH-232ENST00000641947 HACL1Q9UJ83 578 aa20.34■□□□□ 0.85
PHGDH-232ENST00000641947 FRMPD2Q68DX3 1309 aaPredicted RBP20.34■□□□□ 0.85
PHGDH-232ENST00000641947 ADAMTS3O15072 1205 aa20.33■□□□□ 0.84
PHGDH-232ENST00000641947 SCG2P13521 617 aa20.33■□□□□ 0.84
PHGDH-232ENST00000641947 GNAQP50148 359 aa20.33■□□□□ 0.84
PHGDH-232ENST00000641947 MIGA2Q7L4E1 593 aa20.33■□□□□ 0.84
PHGDH-232ENST00000641947 DIS3L2Q8IYB7 885 aaKnown RBP20.33■□□□□ 0.84
PHGDH-232ENST00000641947 PHF20Q9BVI0 1012 aa20.33■□□□□ 0.84
PHGDH-232ENST00000641947 SCAND2PQ9GZW5 306 aaPredicted RBP20.33■□□□□ 0.84
PHGDH-232ENST00000641947 UBE2HP62256 183 aa20.32■□□□□ 0.84
PHGDH-232ENST00000641947 NR5A1Q13285 461 aa20.32■□□□□ 0.84
PHGDH-232ENST00000641947 CAVIN1Q6NZI2 390 aaKnown RBP20.32■□□□□ 0.84
PHGDH-232ENST00000641947 GPKOWQ92917 476 aaPredicted RBP eCLIP20.32■□□□□ 0.84
PHGDH-232ENST00000641947 SPZ1Q9BXG8 430 aa20.32■□□□□ 0.84
PHGDH-232ENST00000641947 KANSL2Q9H9L4 492 aa20.32■□□□□ 0.84
PHGDH-232ENST00000641947 RNF181Q9P0P0 153 aa20.32■□□□□ 0.84
PHGDH-232ENST00000641947 NYAP2Q9P242 653 aa20.32■□□□□ 0.84
PHGDH-232ENST00000641947 FRMD4AQ9P2Q2 1039 aaPredicted RBP20.32■□□□□ 0.84
PHGDH-232ENST00000641947 TBC1D12O60347 775 aa20.31■□□□□ 0.84
PHGDH-232ENST00000641947 ICA1Q05084 483 aa20.31■□□□□ 0.84
PHGDH-232ENST00000641947 TYW1BQ6NUM6 668 aa20.31■□□□□ 0.84
PHGDH-232ENST00000641947 MKL1Q969V6 931 aa20.31■□□□□ 0.84
PHGDH-232ENST00000641947 PGBD1Q96JS3 809 aa20.31■□□□□ 0.84
PHGDH-232ENST00000641947 TMEM63CQ9P1W3 806 aa20.31■□□□□ 0.84
PHGDH-232ENST00000641947 CLIC4Q9Y696 253 aa20.31■□□□□ 0.84
PHGDH-232ENST00000641947 MBD3O95983 291 aa20.31■□□□□ 0.84
PHGDH-232ENST00000641947 EPS15P42566 896 aa20.31■□□□□ 0.84
PHGDH-232ENST00000641947 MAP3K10Q02779 954 aa20.31■□□□□ 0.84
PHGDH-232ENST00000641947 UBA5Q9GZZ9 404 aa20.31■□□□□ 0.84
Retrieved 100 of 20,778 RNA–protein pairs in 51.8 ms