RNA–Protein interactions for RNA: ENST00000641009.1

LINC00339-211, long intergenic non-protein coding RNA 339, humanhuman

Gene LINC00339, Length 1,450 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00339-211ENST00000641009 PCDHB15Q9Y5E8 787 aa16.74■□□□□ 0.27
LINC00339-211ENST00000641009 LAMA3Q16787 3333 aa16.74■□□□□ 0.27
LINC00339-211ENST00000641009 ZKSCAN1P17029 563 aaPredicted RBP16.73■□□□□ 0.27
LINC00339-211ENST00000641009 RGS2P41220 211 aa16.73■□□□□ 0.27
LINC00339-211ENST00000641009 CCNA1P78396 465 aa16.73■□□□□ 0.27
LINC00339-211ENST00000641009 MAP3K21Q5TCX8 1036 aa16.73■□□□□ 0.27
LINC00339-211ENST00000641009 CTR9Q6PD62 1173 aa16.73■□□□□ 0.27
LINC00339-211ENST00000641009 C16orf86Q6ZW13 317 aa16.73■□□□□ 0.27
LINC00339-211ENST00000641009 SIAH1Q8IUQ4 282 aa16.73■□□□□ 0.27
LINC00339-211ENST00000641009 KBTBD3Q8NAB2 608 aa16.73■□□□□ 0.27
LINC00339-211ENST00000641009 PAWRQ96IZ0 340 aaKnown RBP16.73■□□□□ 0.27
LINC00339-211ENST00000641009 TANGO6Q9C0B7 1094 aa16.73■□□□□ 0.27
LINC00339-211ENST00000641009 ZNF236Q9UL36 1845 aa16.73■□□□□ 0.27
LINC00339-211ENST00000641009 CAPN2P17655 700 aa16.73■□□□□ 0.27
LINC00339-211ENST00000641009 ICA1Q05084 483 aa16.73■□□□□ 0.27
LINC00339-211ENST00000641009 STRBPQ96SI9 672 aaKnown RBP16.73■□□□□ 0.27
LINC00339-211ENST00000641009 APBA2Q99767 749 aa16.73■□□□□ 0.27
LINC00339-211ENST00000641009 CACNB2Q08289 660 aaPredicted RBP16.72■□□□□ 0.27
LINC00339-211ENST00000641009 MAP2K5Q13163 448 aa16.72■□□□□ 0.27
LINC00339-211ENST00000641009 COG2Q14746 738 aa16.72■□□□□ 0.27
LINC00339-211ENST00000641009 CHRDL2Q6WN34 429 aa16.72■□□□□ 0.27
LINC00339-211ENST00000641009 TRMT44Q8IYL2 757 aaKnown RBP16.72■□□□□ 0.27
LINC00339-211ENST00000641009 SPICE1Q8N0Z3 855 aa16.72■□□□□ 0.27
LINC00339-211ENST00000641009 OSBP2Q969R2 916 aa16.72■□□□□ 0.27
LINC00339-211ENST00000641009 CCDC17Q96LX7 622 aa16.72■□□□□ 0.27
LINC00339-211ENST00000641009 ARHGEF10LQ9HCE6 1279 aa16.72■□□□□ 0.27
LINC00339-211ENST00000641009 PLXNA1Q9UIW2 1896 aa16.72■□□□□ 0.27
LINC00339-211ENST00000641009 GLRX3O76003 335 aaKnown RBP16.71■□□□□ 0.27
LINC00339-211ENST00000641009 PTPREP23469 700 aa16.71■□□□□ 0.27
LINC00339-211ENST00000641009 RRP1P56182 461 aaKnown RBP16.71■□□□□ 0.27
LINC00339-211ENST00000641009 NECAB2Q7Z6G3 386 aa16.71■□□□□ 0.27
LINC00339-211ENST00000641009 APPBP2Q92624 585 aa16.71■□□□□ 0.27
LINC00339-211ENST00000641009 ARPP21Q9UBL0 812 aaPredicted RBP16.71■□□□□ 0.27
LINC00339-211ENST00000641009 TMX2Q9Y320 296 aa16.71■□□□□ 0.27
LINC00339-211ENST00000641009 SLC15A5A6NIM6 579 aa16.7■□□□□ 0.26
LINC00339-211ENST00000641009 GSG1L2A8MUP6 293 aa16.7■□□□□ 0.26
LINC00339-211ENST00000641009 RNF113AO15541 343 aaKnown RBP16.7■□□□□ 0.26
LINC00339-211ENST00000641009 CCND3P30281 292 aaPredicted RBP16.7■□□□□ 0.26
LINC00339-211ENST00000641009 FXR1P51114 621 aaKnown RBP eCLIP16.7■□□□□ 0.26
LINC00339-211ENST00000641009 ATP2B2Q01814 1243 aa16.7■□□□□ 0.26
LINC00339-211ENST00000641009 STK11IPQ8N1F8 1099 aa16.7■□□□□ 0.26
LINC00339-211ENST00000641009 ANKLE1Q8NAG6 615 aa16.7■□□□□ 0.26
LINC00339-211ENST00000641009 OTUD7AQ8TE49 926 aaPredicted RBP16.7■□□□□ 0.26
LINC00339-211ENST00000641009 LPAR1Q92633 364 aa16.7■□□□□ 0.26
LINC00339-211ENST00000641009 SH2D4AQ9H788 454 aa16.7■□□□□ 0.26
LINC00339-211ENST00000641009 VCPKMTQ9H867 229 aa16.7■□□□□ 0.26
LINC00339-211ENST00000641009 HOXC10Q9NYD6 342 aa16.7■□□□□ 0.26
LINC00339-211ENST00000641009 FLRT1Q9NZU1 646 aa16.7■□□□□ 0.26
LINC00339-211ENST00000641009 NR2E3Q9Y5X4 410 aa16.7■□□□□ 0.26
LINC00339-211ENST00000641009 IVNS1ABPQ9Y6Y0 642 aa16.7■□□□□ 0.26
LINC00339-211ENST00000641009 EVI5O60447 810 aa16.69■□□□□ 0.26
LINC00339-211ENST00000641009 EEF2P13639 858 aaKnown RBP16.69■□□□□ 0.26
LINC00339-211ENST00000641009 MNX1P50219 401 aaPredicted RBP16.69■□□□□ 0.26
LINC00339-211ENST00000641009 GRB14Q14449 540 aa16.69■□□□□ 0.26
LINC00339-211ENST00000641009 SAMD1Q6SPF0 538 aaPredicted RBP16.69■□□□□ 0.26
LINC00339-211ENST00000641009 MOV10L1Q9BXT6 1211 aaKnown RBP16.69■□□□□ 0.26
LINC00339-211ENST00000641009 OGDHLQ9ULD0 1010 aa16.69■□□□□ 0.26
LINC00339-211ENST00000641009 M0R2C6 588 aa16.68■□□□□ 0.26
LINC00339-211ENST00000641009 GPAA1O43292 621 aa16.68■□□□□ 0.26
LINC00339-211ENST00000641009 FLOT1O75955 427 aa16.68■□□□□ 0.26
LINC00339-211ENST00000641009 DSG3P32926 999 aa16.68■□□□□ 0.26
LINC00339-211ENST00000641009 SBK1Q52WX2 424 aa16.68■□□□□ 0.26
LINC00339-211ENST00000641009 NPLOC4Q8TAT6 608 aa16.68■□□□□ 0.26
LINC00339-211ENST00000641009 PI4K2BQ8TCG2 481 aa16.68■□□□□ 0.26
LINC00339-211ENST00000641009 ATG4CQ96DT6 458 aa16.68■□□□□ 0.26
LINC00339-211ENST00000641009 SPATC1LQ9H0A9 340 aa16.68■□□□□ 0.26
LINC00339-211ENST00000641009 RBM27Q9P2N5 1060 aaKnown RBP16.68■□□□□ 0.26
LINC00339-211ENST00000641009 TTC41PQ6P2S7 1318 aa16.68■□□□□ 0.26
LINC00339-211ENST00000641009 MINDY4BA8MYZ0 360 aa16.67■□□□□ 0.26
LINC00339-211ENST00000641009 ZFYP08048 801 aaPredicted RBP16.67■□□□□ 0.26
LINC00339-211ENST00000641009 CRBNQ96SW2 442 aa16.67■□□□□ 0.26
LINC00339-211ENST00000641009 GNL3Q9BVP2 549 aaKnown RBP eCLIP16.67■□□□□ 0.26
LINC00339-211ENST00000641009 NBPF3Q9H094 633 aa16.67■□□□□ 0.26
LINC00339-211ENST00000641009 KANSL2Q9H9L4 492 aa16.67■□□□□ 0.26
LINC00339-211ENST00000641009 EPB41L4AQ9HCS5 686 aaPredicted RBP16.67■□□□□ 0.26
LINC00339-211ENST00000641009 SMCHD1A6NHR9 2005 aa16.67■□□□□ 0.26
LINC00339-211ENST00000641009 WDR46O15213 610 aaKnown RBP16.67■□□□□ 0.26
LINC00339-211ENST00000641009 RAD21O60216 631 aa16.67■□□□□ 0.26
LINC00339-211ENST00000641009 RASA1P20936 1047 aa16.67■□□□□ 0.26
LINC00339-211ENST00000641009 PLS1Q14651 629 aa16.67■□□□□ 0.26
LINC00339-211ENST00000641009 LHX8Q68G74 356 aa16.67■□□□□ 0.26
LINC00339-211ENST00000641009 GIMAP6Q6P9H5 292 aa16.67■□□□□ 0.26
LINC00339-211ENST00000641009 SEC62Q99442 399 aaKnown RBP16.67■□□□□ 0.26
LINC00339-211ENST00000641009 ROBO3Q96MS0 1386 aa16.66■□□□□ 0.26
LINC00339-211ENST00000641009 ERC2O15083 957 aa16.66■□□□□ 0.26
LINC00339-211ENST00000641009 APPP05067 770 aa16.66■□□□□ 0.26
LINC00339-211ENST00000641009 HOXC6P09630 235 aa16.66■□□□□ 0.26
LINC00339-211ENST00000641009 ERCC3P19447 782 aa16.66■□□□□ 0.26
LINC00339-211ENST00000641009 ADORA2AP29274 412 aa16.66■□□□□ 0.26
LINC00339-211ENST00000641009 TDO2P48775 406 aa16.66■□□□□ 0.26
LINC00339-211ENST00000641009 MFSD14CQ5VZR4 134 aa16.66■□□□□ 0.26
LINC00339-211ENST00000641009 MB21D1Q8N884 522 aa16.66■□□□□ 0.26
LINC00339-211ENST00000641009 C11orf49Q9H6J7 331 aa16.66■□□□□ 0.26
LINC00339-211ENST00000641009 MKNK2Q9HBH9 465 aa16.66■□□□□ 0.26
LINC00339-211ENST00000641009 FBXO28Q9NVF7 368 aa16.66■□□□□ 0.26
LINC00339-211ENST00000641009 LAMA2P24043 3122 aaKnown RBP16.66■□□□□ 0.26
LINC00339-211ENST00000641009 PFASO15067 1338 aa16.65■□□□□ 0.26
LINC00339-211ENST00000641009 GNAT2P19087 354 aa16.65■□□□□ 0.26
LINC00339-211ENST00000641009 MX1P20591 662 aa16.65■□□□□ 0.26
LINC00339-211ENST00000641009 CYP2C19P33261 490 aa16.65■□□□□ 0.26
Retrieved 100 of 20,778 RNA–protein pairs in 28.8 ms