RNA–Protein interactions for RNA: ENST00000636759.1

SCN1A-213, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5

Gene SCN1A, Length 3,606 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-213ENST00000636759 SLC35F6Q8N357 371 aa7.65□□□□□ -1.18
SCN1A-213ENST00000636759 CAGE1Q8TC20 777 aa7.65□□□□□ -1.18
SCN1A-213ENST00000636759 LRRC59Q96AG4 307 aaKnown RBP7.65□□□□□ -1.18
SCN1A-213ENST00000636759 RBM41Q96IZ5 413 aaKnown RBP7.65□□□□□ -1.18
SCN1A-213ENST00000636759 LGR6Q9HBX8 967 aa7.65□□□□□ -1.18
SCN1A-213ENST00000636759 INCENPQ9NQS7 918 aa7.65□□□□□ -1.18
SCN1A-213ENST00000636759 CPDO75976 1380 aa7.65□□□□□ -1.19
SCN1A-213ENST00000636759 B4DLN1 442 aa7.65□□□□□ -1.19
SCN1A-213ENST00000636759 E7EVH7 732 aa7.65□□□□□ -1.19
SCN1A-213ENST00000636759 PPFIA3O75145 1194 aa7.65□□□□□ -1.19
SCN1A-213ENST00000636759 LSP1P33241 339 aa7.65□□□□□ -1.19
SCN1A-213ENST00000636759 CTCFP49711 727 aaPredicted RBP7.65□□□□□ -1.19
SCN1A-213ENST00000636759 ADKP55263 362 aaKnown RBP7.65□□□□□ -1.19
SCN1A-213ENST00000636759 SKOR1P84550 965 aa7.65□□□□□ -1.19
SCN1A-213ENST00000636759 NECTIN1Q15223 517 aa7.65□□□□□ -1.19
SCN1A-213ENST00000636759 PPP1R7Q15435 360 aa7.65□□□□□ -1.19
SCN1A-213ENST00000636759 SND1Q7KZF4 910 aaKnown RBP eCLIP7.65□□□□□ -1.19
SCN1A-213ENST00000636759 ARMC9Q7Z3E5 817 aa7.65□□□□□ -1.19
SCN1A-213ENST00000636759 RNF168Q8IYW5 571 aaPredicted RBP7.65□□□□□ -1.19
SCN1A-213ENST00000636759 CNTROBQ8N137 903 aa7.65□□□□□ -1.19
SCN1A-213ENST00000636759 BRF1Q92994 677 aa7.65□□□□□ -1.19
SCN1A-213ENST00000636759 MRPL44Q9H9J2 332 aaKnown RBP7.65□□□□□ -1.19
SCN1A-213ENST00000636759 MYO1AQ9UBC5 1043 aa7.65□□□□□ -1.19
SCN1A-213ENST00000636759 GGA2Q9UJY4 613 aa7.65□□□□□ -1.19
SCN1A-213ENST00000636759 SPG7Q9UQ90 795 aa7.65□□□□□ -1.19
SCN1A-213ENST00000636759 LIN7AO14910 233 aaPredicted RBP7.64□□□□□ -1.19
SCN1A-213ENST00000636759 ANP32DO95626 131 aa7.64□□□□□ -1.19
SCN1A-213ENST00000636759 PTH1RQ03431 593 aa7.64□□□□□ -1.19
SCN1A-213ENST00000636759 ADCK5Q3MIX3 580 aa7.64□□□□□ -1.19
SCN1A-213ENST00000636759 PPP1R42Q7Z4L9 355 aa7.64□□□□□ -1.19
SCN1A-213ENST00000636759 PNMA8AQ86V59 439 aaPredicted RBP7.64□□□□□ -1.19
SCN1A-213ENST00000636759 RHPN1Q8TCX5 695 aa7.64□□□□□ -1.19
SCN1A-213ENST00000636759 ANKRD24Q8TF21 1146 aa7.64□□□□□ -1.19
SCN1A-213ENST00000636759 LTV1Q96GA3 475 aaPredicted RBP7.64□□□□□ -1.19
SCN1A-213ENST00000636759 CCT8L2Q96SF2 557 aa7.64□□□□□ -1.19
SCN1A-213ENST00000636759 TM6SF1Q9BZW5 370 aa7.64□□□□□ -1.19
SCN1A-213ENST00000636759 GOLPH3LQ9H4A5 285 aa7.64□□□□□ -1.19
SCN1A-213ENST00000636759 ZFATQ9P243 1243 aa7.64□□□□□ -1.19
SCN1A-213ENST00000636759 COL22A1Q8NFW1 1626 aaPredicted RBP7.64□□□□□ -1.19
SCN1A-213ENST00000636759 RASSF10A6NK89 507 aa7.64□□□□□ -1.19
SCN1A-213ENST00000636759 ATP6V1G1O75348 118 aa7.64□□□□□ -1.19
SCN1A-213ENST00000636759 RNF8O76064 485 aa7.64□□□□□ -1.19
SCN1A-213ENST00000636759 CSB-PGBD3P0DP91 1061 aa7.64□□□□□ -1.19
SCN1A-213ENST00000636759 CDC25CP30307 473 aa7.64□□□□□ -1.19
SCN1A-213ENST00000636759 G3BP1Q13283 466 aaKnown RBP eCLIP7.64□□□□□ -1.19
SCN1A-213ENST00000636759 DYNC1I2Q13409 638 aaKnown RBP7.64□□□□□ -1.19
SCN1A-213ENST00000636759 NLRP14Q86W24 1093 aa7.64□□□□□ -1.19
SCN1A-213ENST00000636759 PAGR1Q9BTK6 254 aa7.64□□□□□ -1.19
SCN1A-213ENST00000636759 ZSWIM6Q9HCJ5 1215 aa7.64□□□□□ -1.19
SCN1A-213ENST00000636759 MYO1BO43795 1136 aa7.64□□□□□ -1.19
SCN1A-213ENST00000636759 PPP1R37O75864 691 aa7.64□□□□□ -1.19
SCN1A-213ENST00000636759 ATP6V1G2O95670 118 aa7.64□□□□□ -1.19
SCN1A-213ENST00000636759 PAX3P23760 479 aa7.64□□□□□ -1.19
SCN1A-213ENST00000636759 CKAP4Q07065 602 aaKnown RBP7.64□□□□□ -1.19
SCN1A-213ENST00000636759 LRP10Q7Z4F1 713 aa7.64□□□□□ -1.19
SCN1A-213ENST00000636759 TAX1BP1Q86VP1 789 aa7.64□□□□□ -1.19
SCN1A-213ENST00000636759 PPFIBP1Q86W92 1011 aa7.64□□□□□ -1.19
SCN1A-213ENST00000636759 SYCP3Q8IZU3 236 aa7.64□□□□□ -1.19
SCN1A-213ENST00000636759 GALNT15Q8N3T1 639 aa7.64□□□□□ -1.19
SCN1A-213ENST00000636759 PROCA1Q8NCQ7 364 aaPredicted RBP7.64□□□□□ -1.19
SCN1A-213ENST00000636759 ACSBG1Q96GR2 724 aa7.64□□□□□ -1.19
SCN1A-213ENST00000636759 LZTS2Q9BRK4 669 aa7.64□□□□□ -1.19
SCN1A-213ENST00000636759 ALDH8A1Q9H2A2 487 aaPredicted RBP7.64□□□□□ -1.19
SCN1A-213ENST00000636759 RTEL1Q9NZ71 1219 aa7.64□□□□□ -1.19
SCN1A-213ENST00000636759 RCOR1Q9UKL0 485 aa7.64□□□□□ -1.19
SCN1A-213ENST00000636759 TAF6LQ9Y6J9 622 aa7.64□□□□□ -1.19
SCN1A-213ENST00000636759 RNMTO43148 476 aaKnown RBP7.63□□□□□ -1.19
SCN1A-213ENST00000636759 KCNQ3O43525 872 aa7.63□□□□□ -1.19
SCN1A-213ENST00000636759 ZMYND10O75800 440 aa7.63□□□□□ -1.19
SCN1A-213ENST00000636759 PTPN21Q16825 1174 aa7.63□□□□□ -1.19
SCN1A-213ENST00000636759 NCAPH2Q6IBW4 605 aa7.63□□□□□ -1.19
SCN1A-213ENST00000636759 IQCEQ6IPM2 695 aa7.63□□□□□ -1.19
SCN1A-213ENST00000636759 BLOC1S2Q6QNY1 142 aa7.63□□□□□ -1.19
SCN1A-213ENST00000636759 DPF2Q92785 391 aa7.63□□□□□ -1.19
SCN1A-213ENST00000636759 OSBPL1AQ9BXW6 950 aa7.63□□□□□ -1.19
SCN1A-213ENST00000636759 EBF2Q9HAK2 575 aa7.63□□□□□ -1.19
SCN1A-213ENST00000636759 U3KPZ7 1027 aaPredicted RBP7.63□□□□□ -1.19
SCN1A-213ENST00000636759 KDM6AO15550 1401 aaPredicted RBP7.63□□□□□ -1.19
SCN1A-213ENST00000636759 MEGF6O75095 1541 aa7.63□□□□□ -1.19
SCN1A-213ENST00000636759 TMEM232C9JQI7 657 aa7.63□□□□□ -1.19
SCN1A-213ENST00000636759 AGPSO00116 658 aa7.63□□□□□ -1.19
SCN1A-213ENST00000636759 CLTAP09496 248 aa7.63□□□□□ -1.19
SCN1A-213ENST00000636759 DESP17661 470 aa7.63□□□□□ -1.19
SCN1A-213ENST00000636759 SCNN1BP51168 640 aa7.63□□□□□ -1.19
SCN1A-213ENST00000636759 FOSBP53539 338 aa7.63□□□□□ -1.19
SCN1A-213ENST00000636759 HDLBPQ00341 1268 aaKnown RBP7.63□□□□□ -1.19
SCN1A-213ENST00000636759 RESTQ13127 1097 aa7.63□□□□□ -1.19
SCN1A-213ENST00000636759 SPECC1LQ69YQ0 1117 aa7.63□□□□□ -1.19
SCN1A-213ENST00000636759 SLC4A10Q6U841 1118 aa7.63□□□□□ -1.19
SCN1A-213ENST00000636759 MTHFD1LQ6UB35 978 aa7.63□□□□□ -1.19
SCN1A-213ENST00000636759 CRELD2Q6UXH1 353 aaPredicted RBP7.63□□□□□ -1.19
SCN1A-213ENST00000636759 TMEM139Q8IV31 216 aa7.63□□□□□ -1.19
SCN1A-213ENST00000636759 MYCBPAPQ8TBZ2 947 aa7.63□□□□□ -1.19
SCN1A-213ENST00000636759 TEKT4Q8WW24 435 aa7.63□□□□□ -1.19
SCN1A-213ENST00000636759 RPGRIP1Q96KN7 1286 aa7.63□□□□□ -1.19
SCN1A-213ENST00000636759 FAM167BQ9BTA0 163 aa7.63□□□□□ -1.19
SCN1A-213ENST00000636759 NUP58Q9BVL2 599 aa7.63□□□□□ -1.19
SCN1A-213ENST00000636759 FAM184BQ9ULE4 1060 aa7.63□□□□□ -1.19
SCN1A-213ENST00000636759 TTF2Q9UNY4 1162 aaKnown RBP7.63□□□□□ -1.19
SCN1A-213ENST00000636759 A0A1B0GVL5 298 aa7.63□□□□□ -1.19
Retrieved 100 of 20,778 RNA–protein pairs in 27.8 ms