RNA–Protein interactions for RNA: ENST00000612121.4

LTBP4-233, Transcript of latent transforming growth factor beta binding protein 4, human

TSL 3

Gene LTBP4, Length 755 nt, Biotype protein coding, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
LTBP4-233	ENST00000612121	ZNF512B	Q96KM6	892 aa	Predicted RBP	18.94	■□□□□ 0.62
LTBP4-233	ENST00000612121	FPGT-TNNI3K	V9GXZ4	949 aa		18.94	■□□□□ 0.62
LTBP4-233	ENST00000612121	GNAI2	P04899	355 aa		18.93	■□□□□ 0.62
LTBP4-233	ENST00000612121	USP5	P45974	858 aa		18.93	■□□□□ 0.62
LTBP4-233	ENST00000612121	TJAP1	Q5JTD0	557 aa		18.93	■□□□□ 0.62
LTBP4-233	ENST00000612121	SHCBP1	Q8NEM2	672 aa		18.93	■□□□□ 0.62
LTBP4-233	ENST00000612121	RNPC3	Q96LT9	517 aa	Known RBP	18.93	■□□□□ 0.62
LTBP4-233	ENST00000612121	SPATC1L	Q9H0A9	340 aa		18.93	■□□□□ 0.62
LTBP4-233	ENST00000612121	CABP5	Q9NP86	173 aa		18.93	■□□□□ 0.62
LTBP4-233	ENST00000612121	TACC3	Q9Y6A5	838 aa		18.93	■□□□□ 0.62
LTBP4-233	ENST00000612121	SMCHD1	A6NHR9	2005 aa		18.93	■□□□□ 0.62
LTBP4-233	ENST00000612121	ERCC3	P19447	782 aa		18.92	■□□□□ 0.62
LTBP4-233	ENST00000612121	SHMT1	P34896	483 aa		18.92	■□□□□ 0.62
LTBP4-233	ENST00000612121	RARS	P54136	660 aa	Known RBP	18.92	■□□□□ 0.62
LTBP4-233	ENST00000612121	COG2	Q14746	738 aa		18.92	■□□□□ 0.62
LTBP4-233	ENST00000612121	GRIN2C	Q14957	1233 aa		18.92	■□□□□ 0.62
LTBP4-233	ENST00000612121	FAM47A	Q5JRC9	791 aa		18.92	■□□□□ 0.62
LTBP4-233	ENST00000612121	MIGA1	Q8NAN2	632 aa		18.92	■□□□□ 0.62
LTBP4-233	ENST00000612121	USP38	Q8NB14	1042 aa		18.92	■□□□□ 0.62
LTBP4-233	ENST00000612121	HOXC10	Q9NYD6	342 aa		18.92	■□□□□ 0.62
LTBP4-233	ENST00000612121	PHF24	Q9UPV7	400 aa		18.92	■□□□□ 0.62
LTBP4-233	ENST00000612121	COL9A1	P20849	921 aa		18.91	■□□□□ 0.62
LTBP4-233	ENST00000612121	TTC6	Q86TZ1	520 aa		18.91	■□□□□ 0.62
LTBP4-233	ENST00000612121	CERS3	Q8IU89	383 aa		18.91	■□□□□ 0.62
LTBP4-233	ENST00000612121		A0A0G2JMZ2	1700 aa		18.91	■□□□□ 0.62
LTBP4-233	ENST00000612121	NCOR1	O75376	2440 aa		18.9	■□□□□ 0.62
LTBP4-233	ENST00000612121		A0A1W2PRG0	241 aa		18.9	■□□□□ 0.62
LTBP4-233	ENST00000612121	TNFRSF10A	O00220	468 aa		18.9	■□□□□ 0.62
LTBP4-233	ENST00000612121	KIAA0355	O15063	1070 aa		18.9	■□□□□ 0.62
LTBP4-233	ENST00000612121	CLTB	P09497	229 aa		18.9	■□□□□ 0.62
LTBP4-233	ENST00000612121	PLCD1	P51178	756 aa		18.9	■□□□□ 0.62
LTBP4-233	ENST00000612121	SEPT2	Q15019	361 aa		18.9	■□□□□ 0.62
LTBP4-233	ENST00000612121	ABRA	Q8N0Z2	381 aa		18.9	■□□□□ 0.62
LTBP4-233	ENST00000612121	SLC5A4	Q9NY91	659 aa		18.9	■□□□□ 0.62
LTBP4-233	ENST00000612121	IDH1	O75874	414 aa	Known RBP	18.89	■□□□□ 0.61
LTBP4-233	ENST00000612121	POLA2	Q14181	598 aa		18.89	■□□□□ 0.61
LTBP4-233	ENST00000612121	MAML3	Q96JK9	1138 aa		18.89	■□□□□ 0.61
LTBP4-233	ENST00000612121	MROH8	Q9H579	483 aa		18.89	■□□□□ 0.61
LTBP4-233	ENST00000612121	BDP1	A6H8Y1	2624 aa		18.88	■□□□□ 0.61
LTBP4-233	ENST00000612121	CHD9	Q3L8U1	2897 aa		18.88	■□□□□ 0.61
LTBP4-233	ENST00000612121	ZNFX1	Q9P2E3	1918 aa	Known RBP	18.88	■□□□□ 0.61
LTBP4-233	ENST00000612121	RAG1	P15918	1043 aa		18.88	■□□□□ 0.61
LTBP4-233	ENST00000612121	DNAJB2	P25686	324 aa		18.88	■□□□□ 0.61
LTBP4-233	ENST00000612121	GABPA	Q06546	454 aa		18.88	■□□□□ 0.61
LTBP4-233	ENST00000612121	MAGEB6	Q8N7X4	407 aa		18.88	■□□□□ 0.61
LTBP4-233	ENST00000612121	MB21D1	Q8N884	522 aa		18.88	■□□□□ 0.61
LTBP4-233	ENST00000612121	TANGO6	Q9C0B7	1094 aa		18.88	■□□□□ 0.61
LTBP4-233	ENST00000612121	DBNL	Q9UJU6	430 aa	Known RBP	18.88	■□□□□ 0.61
LTBP4-233	ENST00000612121	HSFX4	A0A1B0GTS1	333 aa	Predicted RBP	18.87	■□□□□ 0.61
LTBP4-233	ENST00000612121	HSFX3	A0A1B0GWH4	333 aa	Predicted RBP	18.87	■□□□□ 0.61
LTBP4-233	ENST00000612121	DSG3	P32926	999 aa		18.87	■□□□□ 0.61
LTBP4-233	ENST00000612121	FPGS	Q05932	587 aa		18.87	■□□□□ 0.61
LTBP4-233	ENST00000612121	KIAA1755	Q5JYT7	1200 aa		18.87	■□□□□ 0.61
LTBP4-233	ENST00000612121	ZNF576	Q9H609	170 aa		18.87	■□□□□ 0.61
LTBP4-233	ENST00000612121	XPNPEP3	Q9NQH7	507 aa		18.87	■□□□□ 0.61
LTBP4-233	ENST00000612121	NRBP1	Q9UHY1	535 aa		18.87	■□□□□ 0.61
LTBP4-233	ENST00000612121	PQBP1	O60828	265 aa	Known RBP	18.86	■□□□□ 0.61
LTBP4-233	ENST00000612121	RARB	P10826	455 aa		18.86	■□□□□ 0.61
LTBP4-233	ENST00000612121	TRIM27	P14373	513 aa		18.86	■□□□□ 0.61
LTBP4-233	ENST00000612121	PLS1	Q14651	629 aa		18.86	■□□□□ 0.61
LTBP4-233	ENST00000612121	NCAPG2	Q86XI2	1143 aa		18.86	■□□□□ 0.61
LTBP4-233	ENST00000612121	TLR7	Q9NYK1	1049 aa	Known RBP	18.86	■□□□□ 0.61
LTBP4-233	ENST00000612121	TNN	Q9UQP3	1299 aa		18.86	■□□□□ 0.61
LTBP4-233	ENST00000612121	MYO9B	Q13459	2157 aa		18.85	■□□□□ 0.61
LTBP4-233	ENST00000612121		A0A1W2PQ45	241 aa	Predicted RBP	18.85	■□□□□ 0.61
LTBP4-233	ENST00000612121		A0A1W2PQY0	241 aa		18.85	■□□□□ 0.61
LTBP4-233	ENST00000612121	PGK1	P00558	417 aa		18.85	■□□□□ 0.61
LTBP4-233	ENST00000612121	EVX2	Q03828	476 aa		18.85	■□□□□ 0.61
LTBP4-233	ENST00000612121	OS9	Q13438	667 aa	Predicted RBP	18.85	■□□□□ 0.61
LTBP4-233	ENST00000612121	RNF180	Q86T96	592 aa		18.85	■□□□□ 0.61
LTBP4-233	ENST00000612121	SSH3	Q8TE77	659 aa		18.85	■□□□□ 0.61
LTBP4-233	ENST00000612121	RIOK1	Q9BRS2	568 aa	Known RBP	18.85	■□□□□ 0.61
LTBP4-233	ENST00000612121	TMEM39A	Q9NV64	488 aa		18.85	■□□□□ 0.61
LTBP4-233	ENST00000612121	MPHOSPH10	O00566	681 aa	Known RBP	18.84	■□□□□ 0.61
LTBP4-233	ENST00000612121	SURF6	O75683	361 aa	Known RBP	18.84	■□□□□ 0.61
LTBP4-233	ENST00000612121	POLR3D	P05423	398 aa	Predicted RBP	18.84	■□□□□ 0.61
LTBP4-233	ENST00000612121	FCER1A	P12319	257 aa		18.84	■□□□□ 0.61
LTBP4-233	ENST00000612121	FAAP100	Q0VG06	881 aa		18.84	■□□□□ 0.61
LTBP4-233	ENST00000612121	TMED8	Q6PL24	325 aa	Predicted RBP	18.84	■□□□□ 0.61
LTBP4-233	ENST00000612121	ANKRD33	Q7Z3H0	272 aa		18.84	■□□□□ 0.61
LTBP4-233	ENST00000612121	TIFA	Q96CG3	184 aa		18.84	■□□□□ 0.61
LTBP4-233	ENST00000612121	ATG4C	Q96DT6	458 aa		18.84	■□□□□ 0.61
LTBP4-233	ENST00000612121	TOX2	Q96NM4	488 aa		18.84	■□□□□ 0.61
LTBP4-233	ENST00000612121	CCDC8	Q9H0W5	538 aa	Predicted RBP	18.84	■□□□□ 0.61
LTBP4-233	ENST00000612121	ANTXR1	Q9H6X2	564 aa		18.84	■□□□□ 0.61
LTBP4-233	ENST00000612121	RAPGEFL1	Q9UHV5	662 aa		18.84	■□□□□ 0.61
LTBP4-233	ENST00000612121	ROBO3	Q96MS0	1386 aa		18.83	■□□□□ 0.61
LTBP4-233	ENST00000612121	FLOT1	O75955	427 aa		18.83	■□□□□ 0.6
LTBP4-233	ENST00000612121	TAL1	P17542	331 aa	Predicted RBP	18.83	■□□□□ 0.6
LTBP4-233	ENST00000612121	ATP8B2	P98198	1209 aa		18.83	■□□□□ 0.6
LTBP4-233	ENST00000612121	MAP3K12	Q12852	859 aa		18.83	■□□□□ 0.6
LTBP4-233	ENST00000612121	SIAH1	Q8IUQ4	282 aa		18.83	■□□□□ 0.6
LTBP4-233	ENST00000612121	EAF2	Q96CJ1	260 aa	Predicted RBP	18.83	■□□□□ 0.6
LTBP4-233	ENST00000612121	PARP14	Q460N5	1801 aa		18.82	■□□□□ 0.6
LTBP4-233	ENST00000612121	IPO8	O15397	1037 aa	Known RBP	18.82	■□□□□ 0.6
LTBP4-233	ENST00000612121	ZNF865	P0CJ78	1059 aa	Predicted RBP	18.82	■□□□□ 0.6
LTBP4-233	ENST00000612121	TMEM132B	Q14DG7	1078 aa		18.82	■□□□□ 0.6
LTBP4-233	ENST00000612121	ATXN2L	Q8WWM7	1075 aa	Known RBP	18.82	■□□□□ 0.6
LTBP4-233	ENST00000612121	BUD13	Q9BRD0	619 aa	Known RBP eCLIP	18.82	■□□□□ 0.6	7e-7	■□□□□ 10.8
LTBP4-233	ENST00000612121	TINF2	Q9BSI4	451 aa		18.82	■□□□□ 0.6

Retrieved 100 of 20,778 RNA–protein pairs in 45.5 ms