RNA–Protein interactions for RNA: ENST00000601689.1

UPF1-212, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 4

Gene UPF1, Length 561 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-212ENST00000601689 CATSPERGQ6ZRH7 1159 aa22.94■■□□□ 1.26
UPF1-212ENST00000601689 GPRC5AQ8NFJ5 357 aa22.94■■□□□ 1.26
UPF1-212ENST00000601689 COA7Q96BR5 231 aa22.94■■□□□ 1.26
UPF1-212ENST00000601689 P2RX7Q99572 595 aaKnown RBP22.94■■□□□ 1.26
UPF1-212ENST00000601689 DSCC1Q9BVC3 393 aa22.94■■□□□ 1.26
UPF1-212ENST00000601689 CWC22Q9HCG8 908 aaKnown RBP22.94■■□□□ 1.26
UPF1-212ENST00000601689 A0A1W2PRG0 241 aa22.93■■□□□ 1.26
UPF1-212ENST00000601689 TNPO2O14787 897 aaKnown RBP22.93■■□□□ 1.26
UPF1-212ENST00000601689 WDR46O15213 610 aaKnown RBP22.93■■□□□ 1.26
UPF1-212ENST00000601689 RANBP6O60518 1105 aaKnown RBP22.93■■□□□ 1.26
UPF1-212ENST00000601689 ECM2O94769 699 aaPredicted RBP22.93■■□□□ 1.26
UPF1-212ENST00000601689 TTLL1O95922 423 aa22.93■■□□□ 1.26
UPF1-212ENST00000601689 CCNA1P78396 465 aa22.93■■□□□ 1.26
UPF1-212ENST00000601689 IMMTQ16891 758 aaKnown RBP22.93■■□□□ 1.26
UPF1-212ENST00000601689 MFSD6Q6ZSS7 791 aa22.93■■□□□ 1.26
UPF1-212ENST00000601689 NEDD1Q8NHV4 660 aa22.93■■□□□ 1.26
UPF1-212ENST00000601689 HPS5Q9UPZ3 1129 aa22.93■■□□□ 1.26
UPF1-212ENST00000601689 MGAMO43451 1857 aa22.93■■□□□ 1.26
UPF1-212ENST00000601689 COG2Q14746 738 aa22.92■■□□□ 1.26
UPF1-212ENST00000601689 RAET1EQ8TD07 263 aa22.92■■□□□ 1.26
UPF1-212ENST00000601689 CLIP2Q9UDT6 1046 aa22.92■■□□□ 1.26
UPF1-212ENST00000601689 SYNPO2Q9UMS6 1093 aa22.92■■□□□ 1.26
UPF1-212ENST00000601689 MYH4Q9Y623 1939 aa22.92■■□□□ 1.26
UPF1-212ENST00000601689 RRP12Q5JTH9 1297 aaKnown RBP22.91■■□□□ 1.26
UPF1-212ENST00000601689 CASC1Q6TDU7 716 aa22.91■■□□□ 1.26
UPF1-212ENST00000601689 PAGR1Q9BTK6 254 aa22.91■■□□□ 1.26
UPF1-212ENST00000601689 MORF4L1Q9UBU8 362 aa22.91■■□□□ 1.26
UPF1-212ENST00000601689 RABGAP1Q9Y3P9 1069 aa22.91■■□□□ 1.26
UPF1-212ENST00000601689 MYPNQ86TC9 1320 aa22.9■■□□□ 1.26
UPF1-212ENST00000601689 FOXP2O15409 715 aa22.9■■□□□ 1.26
UPF1-212ENST00000601689 ORC4O43929 436 aa22.9■■□□□ 1.26
UPF1-212ENST00000601689 CHMLP26374 656 aa22.9■■□□□ 1.26
UPF1-212ENST00000601689 FAM47AQ5JRC9 791 aa22.9■■□□□ 1.26
UPF1-212ENST00000601689 AKNAD1Q5T1N1 836 aa22.9■■□□□ 1.26
UPF1-212ENST00000601689 KIAA1211Q6ZU35 1233 aa22.9■■□□□ 1.26
UPF1-212ENST00000601689 CLEC10AQ8IUN9 316 aa22.9■■□□□ 1.26
UPF1-212ENST00000601689 SPICE1Q8N0Z3 855 aa22.9■■□□□ 1.26
UPF1-212ENST00000601689 ARHGAP39Q9C0H5 1083 aa22.9■■□□□ 1.26
UPF1-212ENST00000601689 MTMR4Q9NYA4 1195 aa22.9■■□□□ 1.26
UPF1-212ENST00000601689 SRRDQ9UH36 339 aa22.9■■□□□ 1.26
UPF1-212ENST00000601689 PLIN4Q96Q06 1357 aa22.89■■□□□ 1.26
UPF1-212ENST00000601689 FLOT1O75955 427 aa22.89■■□□□ 1.25
UPF1-212ENST00000601689 HAND2P61296 217 aa22.89■■□□□ 1.25
UPF1-212ENST00000601689 SLC9C1Q4G0N8 1177 aa22.89■■□□□ 1.25
UPF1-212ENST00000601689 CEP95Q96GE4 821 aa22.89■■□□□ 1.25
UPF1-212ENST00000601689 TRIM47Q96LD4 638 aa22.89■■□□□ 1.25
UPF1-212ENST00000601689 STX8Q9UNK0 236 aa22.89■■□□□ 1.25
UPF1-212ENST00000601689 DDX52Q9Y2R4 599 aaKnown RBP eCLIP22.89■■□□□ 1.25
UPF1-212ENST00000601689 GREB1LQ9C091 1923 aaPredicted RBP22.88■■□□□ 1.25
UPF1-212ENST00000601689 ERVK-9P63128 1117 aa22.88■■□□□ 1.25
UPF1-212ENST00000601689 ERVK-24P63145 666 aa22.88■■□□□ 1.25
UPF1-212ENST00000601689 BMP2KLQ5H9B9 411 aa22.88■■□□□ 1.25
UPF1-212ENST00000601689 LBX2Q6XYB7 198 aa22.88■■□□□ 1.25
UPF1-212ENST00000601689 SIAH1Q8IUQ4 282 aa22.88■■□□□ 1.25
UPF1-212ENST00000601689 MB21D1Q8N884 522 aa22.88■■□□□ 1.25
UPF1-212ENST00000601689 STAG1Q8WVM7 1258 aa22.88■■□□□ 1.25
UPF1-212ENST00000601689 ESR2Q92731 530 aa22.88■■□□□ 1.25
UPF1-212ENST00000601689 MKL1Q969V6 931 aa22.88■■□□□ 1.25
UPF1-212ENST00000601689 GNL3Q9BVP2 549 aaKnown RBP eCLIP22.88■■□□□ 1.25
UPF1-212ENST00000601689 PPP4R2Q9NY27 417 aa22.88■■□□□ 1.25
UPF1-212ENST00000601689 F5H6K3 240 aa22.87■■□□□ 1.25
UPF1-212ENST00000601689 FGRP09769 529 aa22.87■■□□□ 1.25
UPF1-212ENST00000601689 MAPK4P31152 587 aa22.87■■□□□ 1.25
UPF1-212ENST00000601689 KLRC3Q07444 240 aa22.87■■□□□ 1.25
UPF1-212ENST00000601689 CTDP1Q9Y5B0 961 aaPredicted RBP22.87■■□□□ 1.25
UPF1-212ENST00000601689 PTCH2Q9Y6C5 1203 aa22.87■■□□□ 1.25
UPF1-212ENST00000601689 IGKV6D-41A0A0C4DH26 115 aa22.86■■□□□ 1.25
UPF1-212ENST00000601689 CCDC178Q5BJE1 867 aa22.86■■□□□ 1.25
UPF1-212ENST00000601689 SAMD1Q6SPF0 538 aaPredicted RBP22.86■■□□□ 1.25
UPF1-212ENST00000601689 RBPJLQ9UBG7 517 aa22.86■■□□□ 1.25
UPF1-212ENST00000601689 ISY1Q9ULR0 285 aaKnown RBP22.86■■□□□ 1.25
UPF1-212ENST00000601689 TRDNQ13061 729 aa22.85■■□□□ 1.25
UPF1-212ENST00000601689 IQCA1Q86XH1 822 aa22.85■■□□□ 1.25
UPF1-212ENST00000601689 KRT23Q9C075 422 aa22.85■■□□□ 1.25
UPF1-212ENST00000601689 CNNM2Q9H8M5 875 aa22.85■■□□□ 1.25
UPF1-212ENST00000601689 U3KPZ7 1027 aaPredicted RBP22.85■■□□□ 1.25
UPF1-212ENST00000601689 SPDYE16A6NNV3 312 aaPredicted RBP22.84■■□□□ 1.25
UPF1-212ENST00000601689 DSG3P32926 999 aa22.84■■□□□ 1.25
UPF1-212ENST00000601689 WDR78Q5VTH9 848 aa22.84■■□□□ 1.25
UPF1-212ENST00000601689 GMCL1P1Q8NEA9 526 aa22.84■■□□□ 1.25
UPF1-212ENST00000601689 BIN2Q9UBW5 565 aaPredicted RBP22.84■■□□□ 1.25
UPF1-212ENST00000601689 IVNS1ABPQ9Y6Y0 642 aa22.84■■□□□ 1.25
UPF1-212ENST00000601689 LAMA4Q16363 1823 aa22.83■■□□□ 1.25
UPF1-212ENST00000601689 SGSM2O43147 1006 aa22.83■■□□□ 1.25
UPF1-212ENST00000601689 UBXN2AP68543 259 aa22.83■■□□□ 1.25
UPF1-212ENST00000601689 PRKCZQ05513 592 aa22.83■■□□□ 1.25
UPF1-212ENST00000601689 FAM83BQ5T0W9 1011 aa22.83■■□□□ 1.25
UPF1-212ENST00000601689 SLFN13Q68D06 897 aa22.83■■□□□ 1.25
UPF1-212ENST00000601689 SLAIN1Q8ND83 568 aa22.83■■□□□ 1.25
UPF1-212ENST00000601689 SOCS4Q8WXH5 440 aa22.83■■□□□ 1.25
UPF1-212ENST00000601689 TTC14Q96N46 770 aa22.83■■□□□ 1.25
UPF1-212ENST00000601689 NUDT12Q9BQG2 462 aa22.83■■□□□ 1.25
UPF1-212ENST00000601689 TMEM106CQ9BVX2 250 aa22.83■■□□□ 1.25
UPF1-212ENST00000601689 TXNRD2Q9NNW7 524 aa22.83■■□□□ 1.25
UPF1-212ENST00000601689 INCENPQ9NQS7 918 aa22.83■■□□□ 1.25
UPF1-212ENST00000601689 TCP11L1Q9NUJ3 509 aa22.83■■□□□ 1.25
UPF1-212ENST00000601689 ZSWIM8A7E2V4 1837 aa22.82■■□□□ 1.24
UPF1-212ENST00000601689 DOCK3Q8IZD9 2030 aa22.82■■□□□ 1.24
UPF1-212ENST00000601689 NDUFB10O96000 172 aa22.82■■□□□ 1.24
UPF1-212ENST00000601689 CTGFP29279 349 aa22.82■■□□□ 1.24
Retrieved 100 of 20,778 RNA–protein pairs in 20.5 ms