RNA–Protein interactions for RNA: ENST00000601662.5

USE1-210, Transcript of unconventional SNARE in the ER 1, humanhuman

TSL 4

Gene USE1, Length 559 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USE1-210ENST00000601662 ARHGAP39Q9C0H5 1083 aa17.02■□□□□ 0.32
USE1-210ENST00000601662 NBPF3Q9H094 633 aa17.02■□□□□ 0.32
USE1-210ENST00000601662 EFCC1Q9HA90 598 aa17.02■□□□□ 0.32
USE1-210ENST00000601662 ZSWIM6Q9HCJ5 1215 aa17.02■□□□□ 0.32
USE1-210ENST00000601662 CYP46A1Q9Y6A2 500 aa17.02■□□□□ 0.32
USE1-210ENST00000601662 PTPRFP10586 1907 aa17.02■□□□□ 0.31
USE1-210ENST00000601662 CAP1Q01518 475 aa17.01■□□□□ 0.31
USE1-210ENST00000601662 ATP2B2Q01814 1243 aa17.01■□□□□ 0.31
USE1-210ENST00000601662 PABPC4Q13310 644 aaKnown RBP eCLIP17.01■□□□□ 0.31
USE1-210ENST00000601662 ADCK5Q3MIX3 580 aa17.01■□□□□ 0.31
USE1-210ENST00000601662 TMEM179Q6ZVK1 233 aa17.01■□□□□ 0.31
USE1-210ENST00000601662 OTOP1Q7RTM1 612 aa17.01■□□□□ 0.31
USE1-210ENST00000601662 CCDC17Q96LX7 622 aa17.01■□□□□ 0.31
USE1-210ENST00000601662 KIF2CQ99661 725 aa17.01■□□□□ 0.31
USE1-210ENST00000601662 TOMM22Q9NS69 142 aa17.01■□□□□ 0.31
USE1-210ENST00000601662 EMILIN3Q9NT22 766 aa17.01■□□□□ 0.31
USE1-210ENST00000601662 PNMA3Q9UL41 463 aa17.01■□□□□ 0.31
USE1-210ENST00000601662 SLC45A1Q9Y2W3 748 aa17.01■□□□□ 0.31
USE1-210ENST00000601662 PRDM1O75626 825 aa17■□□□□ 0.31
USE1-210ENST00000601662 CASTP20810 708 aaKnown RBP17■□□□□ 0.31
USE1-210ENST00000601662 MCM5P33992 734 aa17■□□□□ 0.31
USE1-210ENST00000601662 IRX3P78415 501 aaPredicted RBP17■□□□□ 0.31
USE1-210ENST00000601662 STOX1Q6ZVD7 989 aa17■□□□□ 0.31
USE1-210ENST00000601662 RUFY3Q7L099 469 aa17■□□□□ 0.31
USE1-210ENST00000601662 DHX32Q7L7V1 743 aaKnown RBP17■□□□□ 0.31
USE1-210ENST00000601662 MTA3Q9BTC8 594 aa17■□□□□ 0.31
USE1-210ENST00000601662 ASCC2Q9H1I8 757 aaPredicted RBP17■□□□□ 0.31
USE1-210ENST00000601662 TSHZ2Q9NRE2 1034 aa17■□□□□ 0.31
USE1-210ENST00000601662 DDX52Q9Y2R4 599 aaKnown RBP eCLIP17■□□□□ 0.31
USE1-210ENST00000601662 WDR19Q8NEZ3 1342 aa16.99■□□□□ 0.31
USE1-210ENST00000601662 ADGRA2Q96PE1 1338 aa16.99■□□□□ 0.31
USE1-210ENST00000601662 LACTBP83111 547 aaPredicted RBP16.99■□□□□ 0.31
USE1-210ENST00000601662 ARHGEF6Q15052 776 aa16.99■□□□□ 0.31
USE1-210ENST00000601662 PKN2Q16513 984 aaKnown RBP16.99■□□□□ 0.31
USE1-210ENST00000601662 CCDC178Q5BJE1 867 aa16.99■□□□□ 0.31
USE1-210ENST00000601662 RRP12Q5JTH9 1297 aaKnown RBP16.99■□□□□ 0.31
USE1-210ENST00000601662 ANKRD13CQ8N6S4 541 aa16.99■□□□□ 0.31
USE1-210ENST00000601662 TAF6LQ9Y6J9 622 aa16.99■□□□□ 0.31
USE1-210ENST00000601662 A0A1W2PRG0 241 aa16.98■□□□□ 0.31
USE1-210ENST00000601662 B4E1Z4 1266 aa16.98■□□□□ 0.31
USE1-210ENST00000601662 ST18O60284 1047 aa16.98■□□□□ 0.31
USE1-210ENST00000601662 RANBP6O60518 1105 aaKnown RBP16.98■□□□□ 0.31
USE1-210ENST00000601662 FMNL1O95466 1100 aaPredicted RBP16.98■□□□□ 0.31
USE1-210ENST00000601662 BCRP11274 1271 aa16.98■□□□□ 0.31
USE1-210ENST00000601662 RASA1P20936 1047 aa16.98■□□□□ 0.31
USE1-210ENST00000601662 RPS6KB1P23443 525 aa16.98■□□□□ 0.31
USE1-210ENST00000601662 PSMC4P43686 418 aa16.98■□□□□ 0.31
USE1-210ENST00000601662 NEK4P51957 841 aa16.98■□□□□ 0.31
USE1-210ENST00000601662 USP14P54578 494 aa16.98■□□□□ 0.31
USE1-210ENST00000601662 ICA1Q05084 483 aa16.98■□□□□ 0.31
USE1-210ENST00000601662 FBXO46Q6PJ61 603 aaPredicted RBP16.98■□□□□ 0.31
USE1-210ENST00000601662 P2RX7Q99572 595 aaKnown RBP16.98■□□□□ 0.31
USE1-210ENST00000601662 KIAA1683Q9H0B3 1180 aa16.98■□□□□ 0.31
USE1-210ENST00000601662 ALDH8A1Q9H2A2 487 aaPredicted RBP16.98■□□□□ 0.31
USE1-210ENST00000601662 INCENPQ9NQS7 918 aa16.98■□□□□ 0.31
USE1-210ENST00000601662 ZSWIM5Q9P217 1185 aa16.98■□□□□ 0.31
USE1-210ENST00000601662 LAMA4Q16363 1823 aa16.98■□□□□ 0.31
USE1-210ENST00000601662 MYH8P13535 1937 aa16.98■□□□□ 0.31
USE1-210ENST00000601662 RAD21O60216 631 aa16.97■□□□□ 0.31
USE1-210ENST00000601662 KDM4AO75164 1064 aa16.97■□□□□ 0.31
USE1-210ENST00000601662 EXOSC10Q01780 885 aaKnown RBP16.97■□□□□ 0.31
USE1-210ENST00000601662 SART3Q15020 963 aaKnown RBP16.97■□□□□ 0.31
USE1-210ENST00000601662 IQCA1Q86XH1 822 aa16.97■□□□□ 0.31
USE1-210ENST00000601662 MB21D2Q8IYB1 491 aaPredicted RBP16.97■□□□□ 0.31
USE1-210ENST00000601662 ARHGEF10LQ9HCE6 1279 aa16.97■□□□□ 0.31
USE1-210ENST00000601662 PDRG1Q9NUG6 133 aa16.97■□□□□ 0.31
USE1-210ENST00000601662 HPS5Q9UPZ3 1129 aa16.97■□□□□ 0.31
USE1-210ENST00000601662 NEDD4P46934 1319 aa16.96■□□□□ 0.31
USE1-210ENST00000601662 ERICH2A1L162 156 aa16.96■□□□□ 0.31
USE1-210ENST00000601662 TSPY2A6NKD2 308 aa16.96■□□□□ 0.31
USE1-210ENST00000601662 PEX10O60683 326 aa16.96■□□□□ 0.31
USE1-210ENST00000601662 TSPY3P0CV98 308 aa16.96■□□□□ 0.31
USE1-210ENST00000601662 TSPY8P0CW00 308 aa16.96■□□□□ 0.31
USE1-210ENST00000601662 EEF2P13639 858 aaKnown RBP16.96■□□□□ 0.31
USE1-210ENST00000601662 CTGFP29279 349 aa16.96■□□□□ 0.31
USE1-210ENST00000601662 HOXA7P31268 230 aaPredicted RBP16.96■□□□□ 0.31
USE1-210ENST00000601662 MCM2P49736 904 aa16.96■□□□□ 0.31
USE1-210ENST00000601662 FGD1P98174 961 aa16.96■□□□□ 0.31
USE1-210ENST00000601662 TFAP4Q01664 338 aa16.96■□□□□ 0.31
USE1-210ENST00000601662 ANKRD1Q15327 319 aa16.96■□□□□ 0.31
USE1-210ENST00000601662 PPP4R3BQ5MIZ7 849 aa16.96■□□□□ 0.31
USE1-210ENST00000601662 SIAH1Q8IUQ4 282 aa16.96■□□□□ 0.31
USE1-210ENST00000601662 TMTC2Q8N394 836 aa16.96■□□□□ 0.31
USE1-210ENST00000601662 TMEM87BQ96K49 555 aa16.96■□□□□ 0.31
USE1-210ENST00000601662 UPF3BQ9BZI7 483 aaKnown RBP16.96■□□□□ 0.31
USE1-210ENST00000601662 KANSL2Q9H9L4 492 aa16.96■□□□□ 0.31
USE1-210ENST00000601662 TCP11L1Q9NUJ3 509 aa16.96■□□□□ 0.31
USE1-210ENST00000601662 PTPN22Q9Y2R2 807 aa16.96■□□□□ 0.31
USE1-210ENST00000601662 TACC3Q9Y6A5 838 aa16.96■□□□□ 0.31
USE1-210ENST00000601662 USP17L15C9J2P7 530 aa16.95■□□□□ 0.3
USE1-210ENST00000601662 USP17L13C9JLJ4 530 aa16.95■□□□□ 0.3
USE1-210ENST00000601662 USP17L11C9JVI0 530 aa16.95■□□□□ 0.3
USE1-210ENST00000601662 USP17L18D6R9N7 530 aa16.95■□□□□ 0.3
USE1-210ENST00000601662 USP17L22D6RA61 530 aa16.95■□□□□ 0.3
USE1-210ENST00000601662 USP17L17D6RBQ6 530 aa16.95■□□□□ 0.3
USE1-210ENST00000601662 USP17L19D6RCP7 530 aa16.95■□□□□ 0.3
USE1-210ENST00000601662 USP17L20D6RJB6 530 aa16.95■□□□□ 0.3
USE1-210ENST00000601662 PRC1O43663 620 aa16.95■□□□□ 0.3
USE1-210ENST00000601662 VCAM1P19320 739 aa16.95■□□□□ 0.3
USE1-210ENST00000601662 GCLCP48506 637 aaPredicted RBP16.95■□□□□ 0.3
Retrieved 100 of 20,778 RNA–protein pairs in 22.2 ms