RNA–Protein interactions for RNA: ENST00000599716.5

SHKBP1-220, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 2

Gene SHKBP1, Length 572 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-220ENST00000599716 SLC44A5Q8NCS7 719 aa10.55□□□□□ -0.72
SHKBP1-220ENST00000599716 TRPV1Q8NER1 839 aa10.55□□□□□ -0.72
SHKBP1-220ENST00000599716 ASB2Q96Q27 587 aa10.55□□□□□ -0.72
SHKBP1-220ENST00000599716 APBA2Q99767 749 aa10.55□□□□□ -0.72
SHKBP1-220ENST00000599716 LRFN3Q9BTN0 628 aa10.55□□□□□ -0.72
SHKBP1-220ENST00000599716 SENP6Q9GZR1 1112 aaPredicted RBP10.55□□□□□ -0.72
SHKBP1-220ENST00000599716 TTYH1Q9H313 450 aaPredicted RBP10.55□□□□□ -0.72
SHKBP1-220ENST00000599716 EXOC6BQ9Y2D4 811 aa10.55□□□□□ -0.72
SHKBP1-220ENST00000599716 NAV1Q8NEY1 1877 aa10.55□□□□□ -0.72
SHKBP1-220ENST00000599716 USP17L15C9J2P7 530 aa10.54□□□□□ -0.72
SHKBP1-220ENST00000599716 USP17L13C9JLJ4 530 aa10.54□□□□□ -0.72
SHKBP1-220ENST00000599716 USP17L11C9JVI0 530 aa10.54□□□□□ -0.72
SHKBP1-220ENST00000599716 USP17L18D6R9N7 530 aa10.54□□□□□ -0.72
SHKBP1-220ENST00000599716 USP17L22D6RA61 530 aa10.54□□□□□ -0.72
SHKBP1-220ENST00000599716 USP17L17D6RBQ6 530 aa10.54□□□□□ -0.72
SHKBP1-220ENST00000599716 USP17L19D6RCP7 530 aa10.54□□□□□ -0.72
SHKBP1-220ENST00000599716 USP17L20D6RJB6 530 aa10.54□□□□□ -0.72
SHKBP1-220ENST00000599716 MYCNP04198 464 aaPredicted RBP10.54□□□□□ -0.72
SHKBP1-220ENST00000599716 CHGBP05060 677 aa10.54□□□□□ -0.72
SHKBP1-220ENST00000599716 SHMT1P34896 483 aa10.54□□□□□ -0.72
SHKBP1-220ENST00000599716 USP17L24Q0WX57 530 aa10.54□□□□□ -0.72
SHKBP1-220ENST00000599716 SEPT2Q15019 361 aa10.54□□□□□ -0.72
SHKBP1-220ENST00000599716 ABCB5Q2M3G0 1257 aa10.54□□□□□ -0.72
SHKBP1-220ENST00000599716 CERKLQ49MI3 558 aaPredicted RBP10.54□□□□□ -0.72
SHKBP1-220ENST00000599716 KIAA1755Q5JYT7 1200 aa10.54□□□□□ -0.72
SHKBP1-220ENST00000599716 TATDN1Q6P1N9 297 aa10.54□□□□□ -0.72
SHKBP1-220ENST00000599716 SAMD1Q6SPF0 538 aaPredicted RBP10.54□□□□□ -0.72
SHKBP1-220ENST00000599716 CATSPERGQ6ZRH7 1159 aa10.54□□□□□ -0.72
SHKBP1-220ENST00000599716 EDC3Q96F86 508 aaKnown RBP10.54□□□□□ -0.72
SHKBP1-220ENST00000599716 RPAP3Q9H6T3 665 aaPredicted RBP10.54□□□□□ -0.72
SHKBP1-220ENST00000599716 IL1RAPL2Q9NP60 686 aa10.54□□□□□ -0.72
SHKBP1-220ENST00000599716 A0A1W2PRG0 241 aa10.53□□□□□ -0.72
SHKBP1-220ENST00000599716 SPDYE16A6NNV3 312 aaPredicted RBP10.53□□□□□ -0.72
SHKBP1-220ENST00000599716 MPHOSPH10O00566 681 aaKnown RBP10.53□□□□□ -0.72
SHKBP1-220ENST00000599716 PTPREP23469 700 aa10.53□□□□□ -0.72
SHKBP1-220ENST00000599716 MRE11P49959 708 aa10.53□□□□□ -0.72
SHKBP1-220ENST00000599716 GJC2Q5T442 439 aaPredicted RBP10.53□□□□□ -0.72
SHKBP1-220ENST00000599716 AACSQ86V21 672 aa10.53□□□□□ -0.72
SHKBP1-220ENST00000599716 FTSJ3Q8IY81 847 aaKnown RBP10.53□□□□□ -0.72
SHKBP1-220ENST00000599716 SDR42E1Q8WUS8 393 aa10.53□□□□□ -0.72
SHKBP1-220ENST00000599716 ZNF512BQ96KM6 892 aaPredicted RBP10.53□□□□□ -0.72
SHKBP1-220ENST00000599716 RIOK1Q9BRS2 568 aaKnown RBP10.53□□□□□ -0.72
SHKBP1-220ENST00000599716 SERPINB13Q9UIV8 391 aa10.53□□□□□ -0.72
SHKBP1-220ENST00000599716 RABGAP1Q9Y3P9 1069 aa10.53□□□□□ -0.72
SHKBP1-220ENST00000599716 CHD9Q3L8U1 2897 aa10.53□□□□□ -0.72
SHKBP1-220ENST00000599716 POLR3DP05423 398 aaPredicted RBP10.52□□□□□ -0.73
SHKBP1-220ENST00000599716 ATP2B2Q01814 1243 aa10.52□□□□□ -0.73
SHKBP1-220ENST00000599716 PRAMEF19Q5SWL8 479 aa10.52□□□□□ -0.73
SHKBP1-220ENST00000599716 MFSD14CQ5VZR4 134 aa10.52□□□□□ -0.73
SHKBP1-220ENST00000599716 CEP85Q6P2H3 762 aa10.52□□□□□ -0.73
SHKBP1-220ENST00000599716 IL27Q8NEV9 243 aa10.52□□□□□ -0.73
SHKBP1-220ENST00000599716 PANK1Q8TE04 598 aa10.52□□□□□ -0.73
SHKBP1-220ENST00000599716 DYNLL2Q96FJ2 89 aa10.52□□□□□ -0.73
SHKBP1-220ENST00000599716 C12orf42Q96LP6 360 aa10.52□□□□□ -0.73
SHKBP1-220ENST00000599716 KIAA1683Q9H0B3 1180 aa10.52□□□□□ -0.73
SHKBP1-220ENST00000599716 THEGQ9P2T0 379 aa10.52□□□□□ -0.73
SHKBP1-220ENST00000599716 DDX20Q9UHI6 824 aaKnown RBP10.52□□□□□ -0.73
SHKBP1-220ENST00000599716 NOP58Q9Y2X3 529 aaKnown RBP10.52□□□□□ -0.73
SHKBP1-220ENST00000599716 RLFQ13129 1914 aa10.52□□□□□ -0.73
SHKBP1-220ENST00000599716 CYP2D7A0A087X1C5 515 aa10.51□□□□□ -0.73
SHKBP1-220ENST00000599716 SLC15A5A6NIM6 579 aa10.51□□□□□ -0.73
SHKBP1-220ENST00000599716 COBLO75128 1261 aa10.51□□□□□ -0.73
SHKBP1-220ENST00000599716 RTP1P59025 263 aa10.51□□□□□ -0.73
SHKBP1-220ENST00000599716 MRPS5P82675 430 aaKnown RBP10.51□□□□□ -0.73
SHKBP1-220ENST00000599716 SMAD3P84022 425 aaKnown RBP10.51□□□□□ -0.73
SHKBP1-220ENST00000599716 GRB14Q14449 540 aa10.51□□□□□ -0.73
SHKBP1-220ENST00000599716 TMEM31Q5JXX7 168 aa10.51□□□□□ -0.73
SHKBP1-220ENST00000599716 SPICE1Q8N0Z3 855 aa10.51□□□□□ -0.73
SHKBP1-220ENST00000599716 LCORLQ8N3X6 602 aa10.51□□□□□ -0.73
SHKBP1-220ENST00000599716 FERMT2Q96AC1 680 aa10.51□□□□□ -0.73
SHKBP1-220ENST00000599716 DNAJC2Q99543 621 aaKnown RBP10.51□□□□□ -0.73
SHKBP1-220ENST00000599716 MOV10L1Q9BXT6 1211 aaKnown RBP10.51□□□□□ -0.73
SHKBP1-220ENST00000599716 TANGO6Q9C0B7 1094 aa10.51□□□□□ -0.73
SHKBP1-220ENST00000599716 GINM1Q9NU53 330 aa10.51□□□□□ -0.73
SHKBP1-220ENST00000599716 ATP11BQ9Y2G3 1177 aa10.51□□□□□ -0.73
SHKBP1-220ENST00000599716 LTBP2Q14767 1821 aa10.51□□□□□ -0.73
SHKBP1-220ENST00000599716 BAZ2AQ9UIF9 1905 aaKnown RBP10.5□□□□□ -0.73
SHKBP1-220ENST00000599716 MAGEB6P1A0A0J9YX57 407 aa10.5□□□□□ -0.73
SHKBP1-220ENST00000599716 CCER2I3L3R5 266 aa10.5□□□□□ -0.73
SHKBP1-220ENST00000599716 GOLIM4O00461 696 aa10.5□□□□□ -0.73
SHKBP1-220ENST00000599716 PRKAB2O43741 272 aa10.5□□□□□ -0.73
SHKBP1-220ENST00000599716 PDE6AP16499 860 aa10.5□□□□□ -0.73
SHKBP1-220ENST00000599716 ADORA2AP29274 412 aa10.5□□□□□ -0.73
SHKBP1-220ENST00000599716 USP14P54578 494 aa10.5□□□□□ -0.73
SHKBP1-220ENST00000599716 CCNA1P78396 465 aa10.5□□□□□ -0.73
SHKBP1-220ENST00000599716 GABPAQ06546 454 aa10.5□□□□□ -0.73
SHKBP1-220ENST00000599716 PLS1Q14651 629 aa10.5□□□□□ -0.73
SHKBP1-220ENST00000599716 C9orf50Q5SZB4 431 aa10.5□□□□□ -0.73
SHKBP1-220ENST00000599716 SLC9C2Q5TAH2 1124 aa10.5□□□□□ -0.73
SHKBP1-220ENST00000599716 TTC6Q86TZ1 520 aa10.5□□□□□ -0.73
SHKBP1-220ENST00000599716 TRMT44Q8IYL2 757 aaKnown RBP10.5□□□□□ -0.73
SHKBP1-220ENST00000599716 GTF3C2Q8WUA4 911 aaPredicted RBP10.5□□□□□ -0.73
SHKBP1-220ENST00000599716 ATG4CQ96DT6 458 aa10.5□□□□□ -0.73
SHKBP1-220ENST00000599716 LBHD1Q9BQE6 289 aaPredicted RBP10.5□□□□□ -0.73
SHKBP1-220ENST00000599716 EHD4Q9H223 541 aa10.5□□□□□ -0.73
SHKBP1-220ENST00000599716 ARMT1Q9H993 441 aa10.5□□□□□ -0.73
SHKBP1-220ENST00000599716 CABP5Q9NP86 173 aa10.5□□□□□ -0.73
SHKBP1-220ENST00000599716 PRDM5Q9NQX1 630 aaPredicted RBP10.5□□□□□ -0.73
SHKBP1-220ENST00000599716 MCM9Q9NXL9 1143 aa10.5□□□□□ -0.73
SHKBP1-220ENST00000599716 IVNS1ABPQ9Y6Y0 642 aa10.5□□□□□ -0.73
Retrieved 100 of 20,778 RNA–protein pairs in 25.6 ms