RNA–Protein interactions for RNA: ENST00000597776.1

LSM4-205, Transcript of LSM4 homolog, U6 small nuclear RNA and mRNA degradation associated, human

TSL 2

Gene LSM4, Length 446 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

Download Table

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
LSM4-205	ENST00000597776	ATP5J	P18859	108 aa		12.72	□□□□□ -0.37
LSM4-205	ENST00000597776	HAUS7	Q99871	368 aa		12.72	□□□□□ -0.37
LSM4-205	ENST00000597776	TANGO6	Q9C0B7	1094 aa		12.72	□□□□□ -0.37
LSM4-205	ENST00000597776	DNAH12	Q6ZR08	3092 aa		12.72	□□□□□ -0.37
LSM4-205	ENST00000597776	SMARCA5	O60264	1052 aa	Predicted RBP	12.71	□□□□□ -0.37
LSM4-205	ENST00000597776	COL6A1	P12109	1028 aa		12.71	□□□□□ -0.37
LSM4-205	ENST00000597776	AKR1B1	P15121	316 aa		12.71	□□□□□ -0.37
LSM4-205	ENST00000597776	GRB14	Q14449	540 aa		12.71	□□□□□ -0.37
LSM4-205	ENST00000597776	MFSD14C	Q5VZR4	134 aa		12.71	□□□□□ -0.37
LSM4-205	ENST00000597776	TMEM179	Q6ZVK1	233 aa		12.71	□□□□□ -0.37
LSM4-205	ENST00000597776	SIAH1	Q8IUQ4	282 aa		12.71	□□□□□ -0.37
LSM4-205	ENST00000597776	SPICE1	Q8N0Z3	855 aa		12.71	□□□□□ -0.37
LSM4-205	ENST00000597776	NPLOC4	Q8TAT6	608 aa		12.71	□□□□□ -0.37
LSM4-205	ENST00000597776	LRCH3	Q96II8	777 aa		12.71	□□□□□ -0.37
LSM4-205	ENST00000597776	GDF15	Q99988	308 aa		12.71	□□□□□ -0.37
LSM4-205	ENST00000597776	DDX24	Q9GZR7	859 aa	Known RBP eCLIP	12.71	□□□□□ -0.37	3e-8	■■□□□ 14.5
LSM4-205	ENST00000597776	SWAP70	Q9UH65	585 aa		12.71	□□□□□ -0.37
LSM4-205	ENST00000597776	IVNS1ABP	Q9Y6Y0	642 aa		12.71	□□□□□ -0.37
LSM4-205	ENST00000597776	BAZ2A	Q9UIF9	1905 aa	Known RBP	12.7	□□□□□ -0.38
LSM4-205	ENST00000597776		A0A1W2PPC1	479 aa		12.7	□□□□□ -0.38
LSM4-205	ENST00000597776	CYP2C19	P33261	490 aa		12.7	□□□□□ -0.38
LSM4-205	ENST00000597776	ATP2B2	Q01814	1243 aa		12.7	□□□□□ -0.38
LSM4-205	ENST00000597776	ICA1	Q05084	483 aa		12.7	□□□□□ -0.38
LSM4-205	ENST00000597776	COG2	Q14746	738 aa		12.7	□□□□□ -0.38
LSM4-205	ENST00000597776	LRRC26	Q2I0M4	334 aa		12.7	□□□□□ -0.38
LSM4-205	ENST00000597776	SAMD1	Q6SPF0	538 aa	Predicted RBP	12.7	□□□□□ -0.38
LSM4-205	ENST00000597776	MOV10L1	Q9BXT6	1211 aa	Known RBP	12.7	□□□□□ -0.38
LSM4-205	ENST00000597776	ATP8A2	Q9NTI2	1148 aa		12.7	□□□□□ -0.38
LSM4-205	ENST00000597776		A0A0G2JMZ2	1700 aa		12.7	□□□□□ -0.38
LSM4-205	ENST00000597776	FRMPD3	Q5JV73	1810 aa		12.69	□□□□□ -0.38
LSM4-205	ENST00000597776	RLF	Q13129	1914 aa		12.69	□□□□□ -0.38
LSM4-205	ENST00000597776	USP17L12	C9JPN9	530 aa		12.69	□□□□□ -0.38
LSM4-205	ENST00000597776	USP17L21	D6R901	530 aa		12.69	□□□□□ -0.38
LSM4-205	ENST00000597776	HOXC6	P09630	235 aa		12.69	□□□□□ -0.38
LSM4-205	ENST00000597776	ADORA2A	P29274	412 aa		12.69	□□□□□ -0.38
LSM4-205	ENST00000597776	CNGA1	P29973	690 aa		12.69	□□□□□ -0.38
LSM4-205	ENST00000597776	MAGEA10	P43363	369 aa	Predicted RBP	12.69	□□□□□ -0.38
LSM4-205	ENST00000597776	CDK8	P49336	464 aa		12.69	□□□□□ -0.38
LSM4-205	ENST00000597776	C12orf60	Q5U649	245 aa		12.69	□□□□□ -0.38
LSM4-205	ENST00000597776	TRPV1	Q8NER1	839 aa		12.69	□□□□□ -0.38
LSM4-205	ENST00000597776	ATG4C	Q96DT6	458 aa		12.69	□□□□□ -0.38
LSM4-205	ENST00000597776	LRRCC1	Q9C099	1032 aa		12.69	□□□□□ -0.38
LSM4-205	ENST00000597776	SPATC1L	Q9H0A9	340 aa		12.69	□□□□□ -0.38
LSM4-205	ENST00000597776	ARHGEF10L	Q9HCE6	1279 aa		12.69	□□□□□ -0.38
LSM4-205	ENST00000597776	HOXC10	Q9NYD6	342 aa		12.69	□□□□□ -0.38
LSM4-205	ENST00000597776	MYH8	P13535	1937 aa		12.68	□□□□□ -0.38
LSM4-205	ENST00000597776	FLOT1	O75955	427 aa		12.68	□□□□□ -0.38
LSM4-205	ENST00000597776	ERCC3	P19447	782 aa		12.68	□□□□□ -0.38
LSM4-205	ENST00000597776	BMP8B	P34820	402 aa		12.68	□□□□□ -0.38
LSM4-205	ENST00000597776	PLS1	Q14651	629 aa		12.68	□□□□□ -0.38
LSM4-205	ENST00000597776	UBE3C	Q15386	1083 aa		12.68	□□□□□ -0.38
LSM4-205	ENST00000597776	DPP9	Q86TI2	863 aa		12.68	□□□□□ -0.38
LSM4-205	ENST00000597776	LPAR1	Q92633	364 aa		12.68	□□□□□ -0.38
LSM4-205	ENST00000597776	PUS7L	Q9H0K6	701 aa	Known RBP	12.68	□□□□□ -0.38
LSM4-205	ENST00000597776	CHMP4B	Q9H444	224 aa	Known RBP	12.68	□□□□□ -0.38
LSM4-205	ENST00000597776	VCPKMT	Q9H867	229 aa		12.68	□□□□□ -0.38
LSM4-205	ENST00000597776	DDX20	Q9UHI6	824 aa	Known RBP	12.68	□□□□□ -0.38
LSM4-205	ENST00000597776	TMX2	Q9Y320	296 aa		12.68	□□□□□ -0.38
LSM4-205	ENST00000597776	SLC4A4	Q9Y6R1	1079 aa		12.68	□□□□□ -0.38
LSM4-205	ENST00000597776	COL6A3	P12111	3177 aa		12.67	□□□□□ -0.38
LSM4-205	ENST00000597776	ZNF236	Q9UL36	1845 aa		12.67	□□□□□ -0.38
LSM4-205	ENST00000597776	MYH7	P12883	1935 aa		12.67	□□□□□ -0.38
LSM4-205	ENST00000597776	COBL	O75128	1261 aa		12.67	□□□□□ -0.38
LSM4-205	ENST00000597776	IGHA2	P01877	340 aa		12.67	□□□□□ -0.38
LSM4-205	ENST00000597776	DSG3	P32926	999 aa		12.67	□□□□□ -0.38
LSM4-205	ENST00000597776	ANO1	Q5XXA6	986 aa		12.67	□□□□□ -0.38
LSM4-205	ENST00000597776	TSHZ3	Q63HK5	1081 aa		12.67	□□□□□ -0.38
LSM4-205	ENST00000597776	CTR9	Q6PD62	1173 aa		12.67	□□□□□ -0.38
LSM4-205	ENST00000597776	C16orf86	Q6ZW13	317 aa		12.67	□□□□□ -0.38
LSM4-205	ENST00000597776	NCAPG2	Q86XI2	1143 aa		12.67	□□□□□ -0.38
LSM4-205	ENST00000597776	AMOTL1	Q8IY63	956 aa		12.67	□□□□□ -0.38
LSM4-205	ENST00000597776	DDRGK1	Q96HY6	314 aa		12.67	□□□□□ -0.38
LSM4-205	ENST00000597776	CCDC17	Q96LX7	622 aa		12.67	□□□□□ -0.38
LSM4-205	ENST00000597776	FBXO28	Q9NVF7	368 aa		12.67	□□□□□ -0.38
LSM4-205	ENST00000597776	CYBA	P13498	195 aa		12.66	□□□□□ -0.38
LSM4-205	ENST00000597776	EEF2	P13639	858 aa	Known RBP	12.66	□□□□□ -0.38
LSM4-205	ENST00000597776	STK11IP	Q8N1F8	1099 aa		12.66	□□□□□ -0.38
LSM4-205	ENST00000597776	MB21D1	Q8N884	522 aa		12.66	□□□□□ -0.38
LSM4-205	ENST00000597776	SHCBP1	Q8NEM2	672 aa		12.66	□□□□□ -0.38
LSM4-205	ENST00000597776	SENP6	Q9GZR1	1112 aa	Predicted RBP	12.66	□□□□□ -0.38
LSM4-205	ENST00000597776	SH2D4A	Q9H788	454 aa		12.66	□□□□□ -0.38
LSM4-205	ENST00000597776	WDR46	O15213	610 aa	Known RBP	12.65	□□□□□ -0.38
LSM4-205	ENST00000597776	STRN	O43815	780 aa		12.65	□□□□□ -0.38
LSM4-205	ENST00000597776	RAD21	O60216	631 aa		12.65	□□□□□ -0.38
LSM4-205	ENST00000597776	MSC	O60682	206 aa		12.65	□□□□□ -0.38
LSM4-205	ENST00000597776	ATN1	P54259	1190 aa	Predicted RBP	12.65	□□□□□ -0.38
LSM4-205	ENST00000597776	MDM2	Q00987	491 aa	Predicted RBP	12.65	□□□□□ -0.38
LSM4-205	ENST00000597776	TMEM132B	Q14DG7	1078 aa		12.65	□□□□□ -0.38
LSM4-205	ENST00000597776	PRAMEF19	Q5SWL8	479 aa		12.65	□□□□□ -0.38
LSM4-205	ENST00000597776	OLFML2B	Q68BL8	750 aa		12.65	□□□□□ -0.38
LSM4-205	ENST00000597776	ZSCAN25	Q6NSZ9	544 aa		12.65	□□□□□ -0.38
LSM4-205	ENST00000597776	GNL3	Q9BVP2	549 aa	Known RBP eCLIP	12.65	□□□□□ -0.38
LSM4-205	ENST00000597776	UBE2O	Q9C0C9	1292 aa	Known RBP	12.65	□□□□□ -0.38
LSM4-205	ENST00000597776	MROH8	Q9H579	483 aa		12.65	□□□□□ -0.38
LSM4-205	ENST00000597776	ECHDC1	Q9NTX5	307 aa		12.65	□□□□□ -0.38
LSM4-205	ENST00000597776	PARP14	Q460N5	1801 aa		12.65	□□□□□ -0.39
LSM4-205	ENST00000597776	LAMA2	P24043	3122 aa	Known RBP	12.64	□□□□□ -0.39
LSM4-205	ENST00000597776	DNM1L	O00429	736 aa		12.64	□□□□□ -0.39
LSM4-205	ENST00000597776	FAM83B	Q5T0W9	1011 aa		12.64	□□□□□ -0.39
LSM4-205	ENST00000597776	GJC2	Q5T442	439 aa	Predicted RBP	12.64	□□□□□ -0.39

Retrieved 100 of 20,778 RNA–protein pairs in 63 ms