RNA–Protein interactions for RNA: ENST00000595874.1

SHKBP1-210, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 2

Gene SHKBP1, Length 203 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-210ENST00000595874 NUDT12Q9BQG2 462 aa12.35□□□□□ -0.43
SHKBP1-210ENST00000595874 MKNK2Q9HBH9 465 aa12.35□□□□□ -0.43
SHKBP1-210ENST00000595874 INCENPQ9NQS7 918 aa12.35□□□□□ -0.43
SHKBP1-210ENST00000595874 FBXO28Q9NVF7 368 aa12.35□□□□□ -0.43
SHKBP1-210ENST00000595874 ISY1Q9ULR0 285 aaKnown RBP12.35□□□□□ -0.43
SHKBP1-210ENST00000595874 CENPFP49454 3210 aa12.35□□□□□ -0.43
SHKBP1-210ENST00000595874 ERC2O15083 957 aa12.34□□□□□ -0.43
SHKBP1-210ENST00000595874 FLOT1O75955 427 aa12.34□□□□□ -0.43
SHKBP1-210ENST00000595874 FARP2O94887 1054 aaPredicted RBP12.34□□□□□ -0.43
SHKBP1-210ENST00000595874 SGPL1O95470 568 aa12.34□□□□□ -0.43
SHKBP1-210ENST00000595874 IGHDP01880 384 aa12.34□□□□□ -0.43
SHKBP1-210ENST00000595874 GJB1P08034 283 aa12.34□□□□□ -0.43
SHKBP1-210ENST00000595874 CCND3P30281 292 aaPredicted RBP12.34□□□□□ -0.43
SHKBP1-210ENST00000595874 TMED8Q6PL24 325 aaPredicted RBP12.34□□□□□ -0.43
SHKBP1-210ENST00000595874 ARPP21Q9UBL0 812 aaPredicted RBP12.34□□□□□ -0.43
SHKBP1-210ENST00000595874 MTMR7Q9Y216 660 aa12.34□□□□□ -0.43
SHKBP1-210ENST00000595874 SUPT16HQ9Y5B9 1047 aaKnown RBP12.34□□□□□ -0.43
SHKBP1-210ENST00000595874 KIAA0100Q14667 2235 aaKnown RBP12.34□□□□□ -0.43
SHKBP1-210ENST00000595874 TTC41PQ6P2S7 1318 aa12.34□□□□□ -0.43
SHKBP1-210ENST00000595874 H0YGN5 161 aa12.33□□□□□ -0.44
SHKBP1-210ENST00000595874 GLRX3O76003 335 aaKnown RBP12.33□□□□□ -0.44
SHKBP1-210ENST00000595874 HMGCRP04035 888 aa12.33□□□□□ -0.44
SHKBP1-210ENST00000595874 PRKAR2AP13861 404 aaKnown RBP12.33□□□□□ -0.44
SHKBP1-210ENST00000595874 ZKSCAN1P17029 563 aaPredicted RBP12.33□□□□□ -0.44
SHKBP1-210ENST00000595874 MAPK4P31152 587 aa12.33□□□□□ -0.44
SHKBP1-210ENST00000595874 CTDSPL2Q05D32 466 aa12.33□□□□□ -0.44
SHKBP1-210ENST00000595874 FAM47AQ5JRC9 791 aa12.33□□□□□ -0.44
SHKBP1-210ENST00000595874 FAM83BQ5T0W9 1011 aa12.33□□□□□ -0.44
SHKBP1-210ENST00000595874 IFNL3Q8IZI9 196 aa12.33□□□□□ -0.44
SHKBP1-210ENST00000595874 NPLOC4Q8TAT6 608 aa12.33□□□□□ -0.44
SHKBP1-210ENST00000595874 PXYLP1Q8TE99 480 aa12.33□□□□□ -0.44
SHKBP1-210ENST00000595874 RILPL2Q969X0 211 aa12.33□□□□□ -0.44
SHKBP1-210ENST00000595874 FLRT1Q9NZU1 646 aa12.33□□□□□ -0.44
SHKBP1-210ENST00000595874 RABGAP1Q9Y3P9 1069 aa12.33□□□□□ -0.44
SHKBP1-210ENST00000595874 TRIM6-TRIM34B2RNG4 842 aa12.32□□□□□ -0.44
SHKBP1-210ENST00000595874 MYCNP04198 464 aaPredicted RBP12.32□□□□□ -0.44
SHKBP1-210ENST00000595874 RASA1P20936 1047 aa12.32□□□□□ -0.44
SHKBP1-210ENST00000595874 CNGA1P29973 690 aa12.32□□□□□ -0.44
SHKBP1-210ENST00000595874 RGS2P41220 211 aa12.32□□□□□ -0.44
SHKBP1-210ENST00000595874 CACNB2Q08289 660 aaPredicted RBP12.32□□□□□ -0.44
SHKBP1-210ENST00000595874 COG2Q14746 738 aa12.32□□□□□ -0.44
SHKBP1-210ENST00000595874 VPS53Q5VIR6 699 aa12.32□□□□□ -0.44
SHKBP1-210ENST00000595874 ANO1Q5XXA6 986 aa12.32□□□□□ -0.44
SHKBP1-210ENST00000595874 NCAPG2Q86XI2 1143 aa12.32□□□□□ -0.44
SHKBP1-210ENST00000595874 LRRC47Q8N1G4 583 aaKnown RBP12.32□□□□□ -0.44
SHKBP1-210ENST00000595874 NKX2-3Q8TAU0 364 aa12.32□□□□□ -0.44
SHKBP1-210ENST00000595874 PAWRQ96IZ0 340 aaKnown RBP12.32□□□□□ -0.44
SHKBP1-210ENST00000595874 GNL3Q9BVP2 549 aaKnown RBP eCLIP12.32□□□□□ -0.44
SHKBP1-210ENST00000595874 MOV10L1Q9BXT6 1211 aaKnown RBP12.32□□□□□ -0.44
SHKBP1-210ENST00000595874 NAPBQ9H115 298 aa12.32□□□□□ -0.44
SHKBP1-210ENST00000595874 VCPKMTQ9H867 229 aa12.32□□□□□ -0.44
SHKBP1-210ENST00000595874 HMX1Q9NP08 348 aaPredicted RBP12.32□□□□□ -0.44
SHKBP1-210ENST00000595874 CLIP2Q9UDT6 1046 aa12.32□□□□□ -0.44
SHKBP1-210ENST00000595874 COL11A1P12107 1806 aaPredicted RBP12.32□□□□□ -0.44
SHKBP1-210ENST00000595874 PATL2C9JE40 543 aaKnown RBP12.31□□□□□ -0.44
SHKBP1-210ENST00000595874 ZFYP08048 801 aaPredicted RBP12.31□□□□□ -0.44
SHKBP1-210ENST00000595874 ERCC3P19447 782 aa12.31□□□□□ -0.44
SHKBP1-210ENST00000595874 DSG3P32926 999 aa12.31□□□□□ -0.44
SHKBP1-210ENST00000595874 MAP2K5Q13163 448 aa12.31□□□□□ -0.44
SHKBP1-210ENST00000595874 ZMYM1Q5SVZ6 1142 aa12.31□□□□□ -0.44
SHKBP1-210ENST00000595874 MORN1Q5T089 497 aa12.31□□□□□ -0.44
SHKBP1-210ENST00000595874 CCDC17Q96LX7 622 aa12.31□□□□□ -0.44
SHKBP1-210ENST00000595874 FAM227BQ96M60 508 aa12.31□□□□□ -0.44
SHKBP1-210ENST00000595874 COLQQ9Y215 455 aaPredicted RBP12.31□□□□□ -0.44
SHKBP1-210ENST00000595874 TMX2Q9Y320 296 aa12.31□□□□□ -0.44
SHKBP1-210ENST00000595874 IVNS1ABPQ9Y6Y0 642 aa12.31□□□□□ -0.44
SHKBP1-210ENST00000595874 SALL3Q9BXA9 1300 aa12.31□□□□□ -0.44
SHKBP1-210ENST00000595874 PTPREP23469 700 aa12.3□□□□□ -0.44
SHKBP1-210ENST00000595874 CYP2C19P33261 490 aa12.3□□□□□ -0.44
SHKBP1-210ENST00000595874 PDE1AP54750 535 aa12.3□□□□□ -0.44
SHKBP1-210ENST00000595874 CCNA1P78396 465 aa12.3□□□□□ -0.44
SHKBP1-210ENST00000595874 SBK1Q52WX2 424 aa12.3□□□□□ -0.44
SHKBP1-210ENST00000595874 CHRDL2Q6WN34 429 aa12.3□□□□□ -0.44
SHKBP1-210ENST00000595874 LBX2Q6XYB7 198 aa12.3□□□□□ -0.44
SHKBP1-210ENST00000595874 RASGRP2Q7LDG7 609 aa12.3□□□□□ -0.44
SHKBP1-210ENST00000595874 DPP9Q86TI2 863 aa12.3□□□□□ -0.44
SHKBP1-210ENST00000595874 ZNF444Q8N0Y2 327 aaPredicted RBP12.3□□□□□ -0.44
SHKBP1-210ENST00000595874 GTF3C2Q8WUA4 911 aaPredicted RBP12.3□□□□□ -0.44
SHKBP1-210ENST00000595874 SOCS4Q8WXH5 440 aa12.3□□□□□ -0.44
SHKBP1-210ENST00000595874 APBA2Q99767 749 aa12.3□□□□□ -0.44
SHKBP1-210ENST00000595874 PAK6Q9NQU5 681 aaPredicted RBP12.3□□□□□ -0.44
SHKBP1-210ENST00000595874 TACC3Q9Y6A5 838 aa12.3□□□□□ -0.44
SHKBP1-210ENST00000595874 RLFQ13129 1914 aa12.3□□□□□ -0.44
SHKBP1-210ENST00000595874 MYH4Q9Y623 1939 aa12.29□□□□□ -0.44
SHKBP1-210ENST00000595874 A0A0D9SFI3 127 aa12.29□□□□□ -0.44
SHKBP1-210ENST00000595874 PGK2P07205 417 aa12.29□□□□□ -0.44
SHKBP1-210ENST00000595874 ADORA2AP29274 412 aa12.29□□□□□ -0.44
SHKBP1-210ENST00000595874 SNAP25P60880 206 aa12.29□□□□□ -0.44
SHKBP1-210ENST00000595874 PPARAQ07869 468 aa12.29□□□□□ -0.44
SHKBP1-210ENST00000595874 NMIQ13287 307 aaPredicted RBP12.29□□□□□ -0.44
SHKBP1-210ENST00000595874 HDAC1Q13547 482 aaPredicted RBP12.29□□□□□ -0.44
SHKBP1-210ENST00000595874 TMEM132BQ14DG7 1078 aa12.29□□□□□ -0.44
SHKBP1-210ENST00000595874 RRP12Q5JTH9 1297 aaKnown RBP12.29□□□□□ -0.44
SHKBP1-210ENST00000595874 PRAMEF19Q5SWL8 479 aa12.29□□□□□ -0.44
SHKBP1-210ENST00000595874 C7orf61Q8IZ16 206 aa12.29□□□□□ -0.44
SHKBP1-210ENST00000595874 USP6NLQ92738 828 aa12.29□□□□□ -0.44
SHKBP1-210ENST00000595874 GCC1Q96CN9 775 aa12.29□□□□□ -0.44
SHKBP1-210ENST00000595874 SPATC1LQ9H0A9 340 aa12.29□□□□□ -0.44
SHKBP1-210ENST00000595874 SH2D4AQ9H788 454 aa12.29□□□□□ -0.44
SHKBP1-210ENST00000595874 KANSL2Q9H9L4 492 aa12.29□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 22.4 ms