RNA–Protein interactions for RNA: ENST00000595758.5

LIG1-208, Transcript of DNA ligase 1, humanhuman

TSL 4

Gene LIG1, Length 606 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-208ENST00000595758 USP17L15C9J2P7 530 aa16.94■□□□□ 0.3
LIG1-208ENST00000595758 USP17L13C9JLJ4 530 aa16.94■□□□□ 0.3
LIG1-208ENST00000595758 USP17L11C9JVI0 530 aa16.94■□□□□ 0.3
LIG1-208ENST00000595758 USP17L18D6R9N7 530 aa16.94■□□□□ 0.3
LIG1-208ENST00000595758 USP17L22D6RA61 530 aa16.94■□□□□ 0.3
LIG1-208ENST00000595758 USP17L17D6RBQ6 530 aa16.94■□□□□ 0.3
LIG1-208ENST00000595758 USP17L19D6RCP7 530 aa16.94■□□□□ 0.3
LIG1-208ENST00000595758 USP17L20D6RJB6 530 aa16.94■□□□□ 0.3
LIG1-208ENST00000595758 RAD21O60216 631 aa16.94■□□□□ 0.3
LIG1-208ENST00000595758 REC8O95072 547 aa16.94■□□□□ 0.3
LIG1-208ENST00000595758 IRX3P78415 501 aaPredicted RBP16.94■□□□□ 0.3
LIG1-208ENST00000595758 USP17L24Q0WX57 530 aa16.94■□□□□ 0.3
LIG1-208ENST00000595758 TRDNQ13061 729 aa16.94■□□□□ 0.3
LIG1-208ENST00000595758 NECTIN1Q15223 517 aa16.94■□□□□ 0.3
LIG1-208ENST00000595758 NOM1Q5C9Z4 860 aaKnown RBP16.94■□□□□ 0.3
LIG1-208ENST00000595758 KIAA1755Q5JYT7 1200 aa16.94■□□□□ 0.3
LIG1-208ENST00000595758 CREB3L3Q68CJ9 461 aa16.94■□□□□ 0.3
LIG1-208ENST00000595758 SPICE1Q8N0Z3 855 aa16.94■□□□□ 0.3
LIG1-208ENST00000595758 NKX2-3Q8TAU0 364 aa16.94■□□□□ 0.3
LIG1-208ENST00000595758 SMCR8Q8TEV9 937 aaPredicted RBP16.94■□□□□ 0.3
LIG1-208ENST00000595758 ASCC2Q9H1I8 757 aaPredicted RBP16.94■□□□□ 0.3
LIG1-208ENST00000595758 SYNPO2Q9UMS6 1093 aa16.94■□□□□ 0.3
LIG1-208ENST00000595758 TAF6LQ9Y6J9 622 aa16.94■□□□□ 0.3
LIG1-208ENST00000595758 LOC285556D6RIA3 1793 aa16.94■□□□□ 0.3
LIG1-208ENST00000595758 E7EWF7 191 aa16.93■□□□□ 0.3
LIG1-208ENST00000595758 F5H6K3 240 aa16.93■□□□□ 0.3
LIG1-208ENST00000595758 SLC27A2O14975 620 aa16.93■□□□□ 0.3
LIG1-208ENST00000595758 KLRC3Q07444 240 aa16.93■□□□□ 0.3
LIG1-208ENST00000595758 LRRC47Q8N1G4 583 aaKnown RBP16.93■□□□□ 0.3
LIG1-208ENST00000595758 RPAP3Q9H6T3 665 aaPredicted RBP16.93■□□□□ 0.3
LIG1-208ENST00000595758 PRDM10Q9NQV6 1147 aa16.93■□□□□ 0.3
LIG1-208ENST00000595758 ZSWIM5Q9P217 1185 aa16.93■□□□□ 0.3
LIG1-208ENST00000595758 FKTNO75072 461 aa16.92■□□□□ 0.3
LIG1-208ENST00000595758 NOVP48745 357 aa16.92■□□□□ 0.3
LIG1-208ENST00000595758 CCDC178Q5BJE1 867 aa16.92■□□□□ 0.3
LIG1-208ENST00000595758 RNF20Q5VTR2 975 aa16.92■□□□□ 0.3
LIG1-208ENST00000595758 C17orf99Q6UX52 265 aa16.92■□□□□ 0.3
LIG1-208ENST00000595758 CATSPERGQ6ZRH7 1159 aa16.92■□□□□ 0.3
LIG1-208ENST00000595758 STOX1Q6ZVD7 989 aa16.92■□□□□ 0.3
LIG1-208ENST00000595758 RALYLQ86SE5 291 aaKnown RBP16.92■□□□□ 0.3
LIG1-208ENST00000595758 IQCA1Q86XH1 822 aa16.92■□□□□ 0.3
LIG1-208ENST00000595758 ZNF296Q8WUU4 475 aaPredicted RBP16.92■□□□□ 0.3
LIG1-208ENST00000595758 P2RX7Q99572 595 aaKnown RBP16.92■□□□□ 0.3
LIG1-208ENST00000595758 TANGO6Q9C0B7 1094 aa16.92■□□□□ 0.3
LIG1-208ENST00000595758 CPA4Q9UI42 421 aa16.92■□□□□ 0.3
LIG1-208ENST00000595758 ADGRA2Q96PE1 1338 aa16.92■□□□□ 0.3
LIG1-208ENST00000595758 WDR46O15213 610 aaKnown RBP16.91■□□□□ 0.3
LIG1-208ENST00000595758 NDUFB10O96000 172 aa16.91■□□□□ 0.3
LIG1-208ENST00000595758 SP3Q02447 781 aa16.91■□□□□ 0.3
LIG1-208ENST00000595758 GMCL1P1Q8NEA9 526 aa16.91■□□□□ 0.3
LIG1-208ENST00000595758 NCOA7Q8NI08 942 aa16.91■□□□□ 0.3
LIG1-208ENST00000595758 TTC14Q96N46 770 aa16.91■□□□□ 0.3
LIG1-208ENST00000595758 ZKSCAN3Q9BRR0 538 aa16.91■□□□□ 0.3
LIG1-208ENST00000595758 TOP1P11387 765 aaKnown RBP16.9■□□□□ 0.3
LIG1-208ENST00000595758 GCLCP48506 637 aaPredicted RBP16.9■□□□□ 0.3
LIG1-208ENST00000595758 HERVK_113P62684 666 aa16.9■□□□□ 0.3
LIG1-208ENST00000595758 COG2Q14746 738 aa16.9■□□□□ 0.3
LIG1-208ENST00000595758 SLFN13Q68D06 897 aa16.9■□□□□ 0.3
LIG1-208ENST00000595758 DGKHQ86XP1 1220 aa16.9■□□□□ 0.3
LIG1-208ENST00000595758 ZSCAN10Q96SZ4 725 aaPredicted RBP16.9■□□□□ 0.3
LIG1-208ENST00000595758 TMEM47Q9BQJ4 181 aa16.9■□□□□ 0.3
LIG1-208ENST00000595758 UBAC1Q9BSL1 405 aa16.9■□□□□ 0.3
LIG1-208ENST00000595758 BCRP11274 1271 aa16.89■□□□□ 0.29
LIG1-208ENST00000595758 ZKSCAN1P17029 563 aaPredicted RBP16.89■□□□□ 0.29
LIG1-208ENST00000595758 FAM83BQ5T0W9 1011 aa16.89■□□□□ 0.29
LIG1-208ENST00000595758 RCSD1Q6JBY9 416 aa16.89■□□□□ 0.29
LIG1-208ENST00000595758 CYB5R4Q7L1T6 521 aa16.89■□□□□ 0.29
LIG1-208ENST00000595758 GTF3C2Q8WUA4 911 aaPredicted RBP16.89■□□□□ 0.29
LIG1-208ENST00000595758 NUP88Q99567 741 aaPredicted RBP16.89■□□□□ 0.29
LIG1-208ENST00000595758 HOXC10Q9NYD6 342 aa16.89■□□□□ 0.29
LIG1-208ENST00000595758 EPB41L2O43491 1005 aaKnown RBP16.88■□□□□ 0.29
LIG1-208ENST00000595758 FLOT1O75955 427 aa16.88■□□□□ 0.29
LIG1-208ENST00000595758 ANKRD13CQ8N6S4 541 aa16.88■□□□□ 0.29
LIG1-208ENST00000595758 ANKS1AQ92625 1134 aa16.88■□□□□ 0.29
LIG1-208ENST00000595758 ERO1AQ96HE7 468 aa16.88■□□□□ 0.29
LIG1-208ENST00000595758 GMCL1Q96IK5 515 aa16.88■□□□□ 0.29
LIG1-208ENST00000595758 EIF5BO60841 1220 aaKnown RBP16.87■□□□□ 0.29
LIG1-208ENST00000595758 BMP3P12645 472 aa16.87■□□□□ 0.29
LIG1-208ENST00000595758 MCCP23508 829 aa16.87■□□□□ 0.29
LIG1-208ENST00000595758 HSPA4P34932 840 aa16.87■□□□□ 0.29
LIG1-208ENST00000595758 SLC1A4P43007 532 aa16.87■□□□□ 0.29
LIG1-208ENST00000595758 TSGA10IPQ3SY00 556 aa16.87■□□□□ 0.29
LIG1-208ENST00000595758 MB21D2Q8IYB1 491 aaPredicted RBP16.87■□□□□ 0.29
LIG1-208ENST00000595758 RASEFQ8IZ41 740 aa16.87■□□□□ 0.29
LIG1-208ENST00000595758 ENAHQ8N8S7 591 aaPredicted RBP16.87■□□□□ 0.29
LIG1-208ENST00000595758 CD99L2Q8TCZ2 262 aa16.87■□□□□ 0.29
LIG1-208ENST00000595758 KCNB2Q92953 911 aa16.87■□□□□ 0.29
LIG1-208ENST00000595758 CHMP4CQ96CF2 233 aa16.87■□□□□ 0.29
LIG1-208ENST00000595758 USP26Q9BXU7 913 aa16.87■□□□□ 0.29
LIG1-208ENST00000595758 ISY1Q9ULR0 285 aaKnown RBP16.87■□□□□ 0.29
LIG1-208ENST00000595758 MTMR7Q9Y216 660 aa16.87■□□□□ 0.29
LIG1-208ENST00000595758 MYH4Q9Y623 1939 aa16.87■□□□□ 0.29
LIG1-208ENST00000595758 CASP8AP2Q9UKL3 1982 aa16.87■□□□□ 0.29
LIG1-208ENST00000595758 TNKSO95271 1327 aa16.87■□□□□ 0.29
LIG1-208ENST00000595758 SPDYE16A6NNV3 312 aaPredicted RBP16.86■□□□□ 0.29
LIG1-208ENST00000595758 IFIT3O14879 490 aaKnown RBP16.86■□□□□ 0.29
LIG1-208ENST00000595758 DSG3P32926 999 aa16.86■□□□□ 0.29
LIG1-208ENST00000595758 KRT32Q14532 448 aa16.86■□□□□ 0.29
LIG1-208ENST00000595758 KIF22Q14807 665 aa16.86■□□□□ 0.29
LIG1-208ENST00000595758 SART3Q15020 963 aaKnown RBP16.86■□□□□ 0.29
Retrieved 100 of 20,778 RNA–protein pairs in 27.4 ms