RNA–Protein interactions for RNA: ENST00000589857.1

ZNF540-208, Transcript of zinc finger protein 540, humanhuman

TSL 4

Gene ZNF540, Length 575 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF540-208ENST00000589857 SCNN1DP51172 638 aa12.18□□□□□ -0.46
ZNF540-208ENST00000589857 NOGQ13253 232 aa12.18□□□□□ -0.46
ZNF540-208ENST00000589857 AXDND1Q5T1B0 1012 aaPredicted RBP12.18□□□□□ -0.46
ZNF540-208ENST00000589857 RESP18Q5W5W9 173 aa12.18□□□□□ -0.46
ZNF540-208ENST00000589857 OLFM4Q6UX06 510 aa12.18□□□□□ -0.46
ZNF540-208ENST00000589857 ZNF804AQ7Z570 1209 aa12.18□□□□□ -0.46
ZNF540-208ENST00000589857 SAPCD2Q86UD0 394 aa12.18□□□□□ -0.46
ZNF540-208ENST00000589857 DZIP1Q86YF9 867 aaKnown RBP12.18□□□□□ -0.46
ZNF540-208ENST00000589857 RAB11FIP4Q86YS3 637 aa12.18□□□□□ -0.46
ZNF540-208ENST00000589857 DIS3L2Q8IYB7 885 aaKnown RBP12.18□□□□□ -0.46
ZNF540-208ENST00000589857 ZNF579Q8NAF0 562 aaKnown RBP12.18□□□□□ -0.46
ZNF540-208ENST00000589857 KIAA1524Q8TCG1 905 aa12.18□□□□□ -0.46
ZNF540-208ENST00000589857 CELF1Q92879 486 aaKnown RBP12.18□□□□□ -0.46
ZNF540-208ENST00000589857 FAM217BQ9NTX9 383 aaPredicted RBP12.18□□□□□ -0.46
ZNF540-208ENST00000589857 GPRC5DQ9NZD1 345 aa12.18□□□□□ -0.46
ZNF540-208ENST00000589857 ZNRF3Q9ULT6 936 aa12.18□□□□□ -0.46
ZNF540-208ENST00000589857 SNAP23O00161 211 aa12.17□□□□□ -0.46
ZNF540-208ENST00000589857 PRPF3O43395 683 aaKnown RBP12.17□□□□□ -0.46
ZNF540-208ENST00000589857 GRAPQ13588 217 aa12.17□□□□□ -0.46
ZNF540-208ENST00000589857 PTPAQ15257 358 aa12.17□□□□□ -0.46
ZNF540-208ENST00000589857 SEC23AQ15436 765 aa12.17□□□□□ -0.46
ZNF540-208ENST00000589857 CT47A1Q5JQC4 288 aaPredicted RBP12.17□□□□□ -0.46
ZNF540-208ENST00000589857 CST9Q5W186 159 aa12.17□□□□□ -0.46
ZNF540-208ENST00000589857 C15orf52Q6ZUT6 534 aaKnown RBP12.17□□□□□ -0.46
ZNF540-208ENST00000589857 SLF2Q8IX21 1173 aa12.17□□□□□ -0.46
ZNF540-208ENST00000589857 CCDC144CPQ8IYA2 1237 aa12.17□□□□□ -0.46
ZNF540-208ENST00000589857 SPC24Q8NBT2 197 aa12.17□□□□□ -0.46
ZNF540-208ENST00000589857 CTCFLQ8NI51 663 aaPredicted RBP12.17□□□□□ -0.46
ZNF540-208ENST00000589857 GRAPLQ8TC17 118 aaPredicted RBP12.17□□□□□ -0.46
ZNF540-208ENST00000589857 NUP133Q8WUM0 1156 aa12.17□□□□□ -0.46
ZNF540-208ENST00000589857 NSUN4Q96CB9 384 aaKnown RBP12.17□□□□□ -0.46
ZNF540-208ENST00000589857 MAP3K14Q99558 947 aa12.17□□□□□ -0.46
ZNF540-208ENST00000589857 TTC12Q9H892 705 aaPredicted RBP12.17□□□□□ -0.46
ZNF540-208ENST00000589857 HPSEQ9Y251 543 aa12.17□□□□□ -0.46
ZNF540-208ENST00000589857 XDHP47989 1333 aa12.16□□□□□ -0.46
ZNF540-208ENST00000589857 H7C1D1 291 aa12.16□□□□□ -0.46
ZNF540-208ENST00000589857 PPFIA3O75145 1194 aa12.16□□□□□ -0.46
ZNF540-208ENST00000589857 BBOX1O75936 387 aa12.16□□□□□ -0.46
ZNF540-208ENST00000589857 RXRAP19793 462 aa12.16□□□□□ -0.46
ZNF540-208ENST00000589857 KRT2P35908 639 aa12.16□□□□□ -0.46
ZNF540-208ENST00000589857 GNAQP50148 359 aa12.16□□□□□ -0.46
ZNF540-208ENST00000589857 MECOMQ03112 1051 aa12.16□□□□□ -0.46
ZNF540-208ENST00000589857 C11orf57Q6ZUT1 292 aaPredicted RBP12.16□□□□□ -0.46
ZNF540-208ENST00000589857 CCDC186Q7Z3E2 898 aa12.16□□□□□ -0.46
ZNF540-208ENST00000589857 TMC4Q7Z404 712 aa12.16□□□□□ -0.46
ZNF540-208ENST00000589857 AOPEPQ8N6M6 819 aa12.16□□□□□ -0.46
ZNF540-208ENST00000589857 CCDC150Q8NCX0 1101 aa12.16□□□□□ -0.46
ZNF540-208ENST00000589857 MYL10Q9BUA6 226 aa12.16□□□□□ -0.46
ZNF540-208ENST00000589857 MCOLN1Q9GZU1 580 aa12.16□□□□□ -0.46
ZNF540-208ENST00000589857 TUBE1Q9UJT0 475 aa12.16□□□□□ -0.46
ZNF540-208ENST00000589857 TRIM75PA6NK02 468 aa12.15□□□□□ -0.46
ZNF540-208ENST00000589857 AP5Z1O43299 807 aa12.15□□□□□ -0.46
ZNF540-208ENST00000589857 RRP9O43818 475 aaKnown RBP12.15□□□□□ -0.46
ZNF540-208ENST00000589857 LDHBP07195 334 aaKnown RBP12.15□□□□□ -0.46
ZNF540-208ENST00000589857 PLCG2P16885 1265 aa12.15□□□□□ -0.46
ZNF540-208ENST00000589857 TRAPPC10P48553 1259 aa12.15□□□□□ -0.46
ZNF540-208ENST00000589857 DGKZQ13574 1117 aa12.15□□□□□ -0.46
ZNF540-208ENST00000589857 CIAPIN1Q6FI81 312 aa12.15□□□□□ -0.46
ZNF540-208ENST00000589857 CTR9Q6PD62 1173 aa12.15□□□□□ -0.46
ZNF540-208ENST00000589857 DPP8Q6V1X1 898 aaPredicted RBP12.15□□□□□ -0.46
ZNF540-208ENST00000589857 C3orf67Q6ZVT6 689 aa12.15□□□□□ -0.46
ZNF540-208ENST00000589857 NBPF11Q86T75 865 aa12.15□□□□□ -0.46
ZNF540-208ENST00000589857 DHX40Q8IX18 779 aaKnown RBP12.15□□□□□ -0.46
ZNF540-208ENST00000589857 ENAHQ8N8S7 591 aaPredicted RBP12.15□□□□□ -0.46
ZNF540-208ENST00000589857 TRIML1Q8N9V2 468 aa12.15□□□□□ -0.46
ZNF540-208ENST00000589857 CNNM3Q8NE01 707 aa12.15□□□□□ -0.46
ZNF540-208ENST00000589857 SDR42E1Q8WUS8 393 aa12.15□□□□□ -0.46
ZNF540-208ENST00000589857 FERMT2Q96AC1 680 aa12.15□□□□□ -0.46
ZNF540-208ENST00000589857 ZNF408Q9H9D4 720 aa12.15□□□□□ -0.46
ZNF540-208ENST00000589857 KCNH3Q9ULD8 1083 aa12.15□□□□□ -0.46
ZNF540-208ENST00000589857 IQSEC3Q9UPP2 1182 aaPredicted RBP12.15□□□□□ -0.46
ZNF540-208ENST00000589857 DDX52Q9Y2R4 599 aaKnown RBP eCLIP12.15□□□□□ -0.46
ZNF540-208ENST00000589857 ATP6V0A2Q9Y487 856 aa12.15□□□□□ -0.46
ZNF540-208ENST00000589857 TCHHQ07283 1943 aa12.15□□□□□ -0.46
ZNF540-208ENST00000589857 MYH15Q9Y2K3 1946 aa12.15□□□□□ -0.46
ZNF540-208ENST00000589857 ADAMTSL1Q8N6G6 1762 aa12.15□□□□□ -0.46
ZNF540-208ENST00000589857 COL1A1P02452 1464 aaPredicted RBP12.14□□□□□ -0.47
ZNF540-208ENST00000589857 UQCRHLA0A096LP55 91 aa12.14□□□□□ -0.47
ZNF540-208ENST00000589857 KIF2AO00139 706 aaPredicted RBP12.14□□□□□ -0.47
ZNF540-208ENST00000589857 TRAF5O00463 557 aa12.14□□□□□ -0.47
ZNF540-208ENST00000589857 CCP110O43303 1012 aa12.14□□□□□ -0.47
ZNF540-208ENST00000589857 SMC2O95347 1197 aa12.14□□□□□ -0.47
ZNF540-208ENST00000589857 TUBB4AP04350 444 aa12.14□□□□□ -0.47
ZNF540-208ENST00000589857 UQCRHP07919 91 aa12.14□□□□□ -0.47
ZNF540-208ENST00000589857 PTGS1P23219 599 aa12.14□□□□□ -0.47
ZNF540-208ENST00000589857 PTPREP23469 700 aa12.14□□□□□ -0.47
ZNF540-208ENST00000589857 ATP2B4P23634 1241 aa12.14□□□□□ -0.47
ZNF540-208ENST00000589857 CALML3P27482 149 aa12.14□□□□□ -0.47
ZNF540-208ENST00000589857 MARCKSP29966 332 aaPredicted RBP12.14□□□□□ -0.47
ZNF540-208ENST00000589857 KRBA2Q6ZNG9 492 aa12.14□□□□□ -0.47
ZNF540-208ENST00000589857 REM2Q8IYK8 340 aaPredicted RBP12.14□□□□□ -0.47
ZNF540-208ENST00000589857 CCDC102AQ96A19 550 aa12.14□□□□□ -0.47
ZNF540-208ENST00000589857 AIFM3Q96NN9 605 aa12.14□□□□□ -0.47
ZNF540-208ENST00000589857 SENP2Q9HC62 589 aa12.14□□□□□ -0.47
ZNF540-208ENST00000589857 ZBTB4Q9P1Z0 1013 aaPredicted RBP12.14□□□□□ -0.47
ZNF540-208ENST00000589857 ANKIB1Q9P2G1 1089 aa12.14□□□□□ -0.47
ZNF540-208ENST00000589857 PGAP2Q9UHJ9 254 aa12.14□□□□□ -0.47
ZNF540-208ENST00000589857 MAST2Q6P0Q8 1798 aa12.13□□□□□ -0.47
ZNF540-208ENST00000589857 USP17L12C9JPN9 530 aa12.13□□□□□ -0.47
ZNF540-208ENST00000589857 USP17L21D6R901 530 aa12.13□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 18.5 ms