RNA–Protein interactions for RNA: ENST00000589604.5

VPS4B-204, Transcript of vacuolar protein sorting 4 homolog B, humanhuman

TSL 1 (best)

Gene VPS4B, Length 1,672 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4B-204ENST00000589604 ZKSCAN3Q9BRR0 538 aa12.25□□□□□ -0.45
VPS4B-204ENST00000589604 ZMYND15Q9H091 742 aa12.25□□□□□ -0.45
VPS4B-204ENST00000589604 KLF18A0A0U1RQI7 1052 aa12.24□□□□□ -0.45
VPS4B-204ENST00000589604 IFIT3O14879 490 aaKnown RBP12.24□□□□□ -0.45
VPS4B-204ENST00000589604 GRM1Q13255 1194 aa12.24□□□□□ -0.45
VPS4B-204ENST00000589604 RAB3GAP1Q15042 981 aa12.24□□□□□ -0.45
VPS4B-204ENST00000589604 TMEM67Q5HYA8 995 aa12.24□□□□□ -0.45
VPS4B-204ENST00000589604 APOA5Q6Q788 366 aa12.24□□□□□ -0.45
VPS4B-204ENST00000589604 SIAH1Q8IUQ4 282 aa12.24□□□□□ -0.45
VPS4B-204ENST00000589604 AMOTL1Q8IY63 956 aa12.24□□□□□ -0.45
VPS4B-204ENST00000589604 SMARCC2Q8TAQ2 1214 aa12.24□□□□□ -0.45
VPS4B-204ENST00000589604 OPTNQ96CV9 577 aa12.24□□□□□ -0.45
VPS4B-204ENST00000589604 SLC10A4Q96EP9 437 aa12.24□□□□□ -0.45
VPS4B-204ENST00000589604 CAPNS2Q96L46 248 aa12.24□□□□□ -0.45
VPS4B-204ENST00000589604 TRIM34Q9BYJ4 488 aa12.24□□□□□ -0.45
VPS4B-204ENST00000589604 NCOA5Q9HCD5 579 aaKnown RBP12.24□□□□□ -0.45
VPS4B-204ENST00000589604 TOMM22Q9NS69 142 aa12.24□□□□□ -0.45
VPS4B-204ENST00000589604 SWAP70Q9UH65 585 aa12.24□□□□□ -0.45
VPS4B-204ENST00000589604 ZBTB21Q9ULJ3 1066 aa12.24□□□□□ -0.45
VPS4B-204ENST00000589604 ZSCAN21Q9Y5A6 473 aaPredicted RBP12.24□□□□□ -0.45
VPS4B-204ENST00000589604 CSADQ9Y600 493 aa12.24□□□□□ -0.45
VPS4B-204ENST00000589604 TCHHQ07283 1943 aa12.24□□□□□ -0.45
VPS4B-204ENST00000589604 SPDYE5A6NIY4 337 aa12.23□□□□□ -0.45
VPS4B-204ENST00000589604 RANBP6O60518 1105 aaKnown RBP12.23□□□□□ -0.45
VPS4B-204ENST00000589604 SLC3A2P08195 630 aaKnown RBP12.23□□□□□ -0.45
VPS4B-204ENST00000589604 CCT2P78371 535 aaKnown RBP12.23□□□□□ -0.45
VPS4B-204ENST00000589604 PDE4BQ07343 736 aa12.23□□□□□ -0.45
VPS4B-204ENST00000589604 DGKZQ13574 1117 aa12.23□□□□□ -0.45
VPS4B-204ENST00000589604 SEPT2Q15019 361 aa12.23□□□□□ -0.45
VPS4B-204ENST00000589604 ABCB5Q2M3G0 1257 aa12.23□□□□□ -0.45
VPS4B-204ENST00000589604 FAM47AQ5JRC9 791 aa12.23□□□□□ -0.45
VPS4B-204ENST00000589604 SPRYD7Q5W111 196 aa12.23□□□□□ -0.45
VPS4B-204ENST00000589604 ENAHQ8N8S7 591 aaPredicted RBP12.23□□□□□ -0.45
VPS4B-204ENST00000589604 OTUD5Q96G74 571 aa12.23□□□□□ -0.45
VPS4B-204ENST00000589604 FAM217BQ9NTX9 383 aaPredicted RBP12.23□□□□□ -0.45
VPS4B-204ENST00000589604 THSD7BQ9C0I4 1608 aa12.23□□□□□ -0.45
VPS4B-204ENST00000589604 NID2Q14112 1375 aa12.23□□□□□ -0.45
VPS4B-204ENST00000589604 TNKSO95271 1327 aa12.22□□□□□ -0.45
VPS4B-204ENST00000589604 UNCXA6NJT0 531 aa12.22□□□□□ -0.45
VPS4B-204ENST00000589604 IRF6O14896 467 aa12.22□□□□□ -0.45
VPS4B-204ENST00000589604 NMT2O60551 498 aa12.22□□□□□ -0.45
VPS4B-204ENST00000589604 JAK2O60674 1132 aa12.22□□□□□ -0.45
VPS4B-204ENST00000589604 GJB2P29033 226 aa12.22□□□□□ -0.45
VPS4B-204ENST00000589604 RCSD1Q6JBY9 416 aa12.22□□□□□ -0.45
VPS4B-204ENST00000589604 ERO1BQ86YB8 467 aa12.22□□□□□ -0.45
VPS4B-204ENST00000589604 NSUN7Q8NE18 718 aaKnown RBP12.22□□□□□ -0.45
VPS4B-204ENST00000589604 ZSCAN10Q96SZ4 725 aaPredicted RBP12.22□□□□□ -0.45
VPS4B-204ENST00000589604 IL17RBQ9NRM6 502 aa12.22□□□□□ -0.45
VPS4B-204ENST00000589604 SMC3Q9UQE7 1217 aa12.22□□□□□ -0.45
VPS4B-204ENST00000589604 PTPRFP10586 1907 aa12.22□□□□□ -0.45
VPS4B-204ENST00000589604 MYH6P13533 1939 aa12.22□□□□□ -0.45
VPS4B-204ENST00000589604 WDR33Q9C0J8 1336 aaKnown RBP12.22□□□□□ -0.45
VPS4B-204ENST00000589604 IGKV6D-41A0A0C4DH26 115 aa12.22□□□□□ -0.45
VPS4B-204ENST00000589604 NT5C2P49902 561 aa12.22□□□□□ -0.45
VPS4B-204ENST00000589604 MOGSQ13724 837 aa12.22□□□□□ -0.45
VPS4B-204ENST00000589604 WTAPQ15007 396 aa12.22□□□□□ -0.45
VPS4B-204ENST00000589604 RAB11FIP4Q86YS3 637 aa12.22□□□□□ -0.45
VPS4B-204ENST00000589604 ACER1Q8TDN7 264 aa12.22□□□□□ -0.45
VPS4B-204ENST00000589604 MS4A4AQ96JQ5 239 aa12.22□□□□□ -0.45
VPS4B-204ENST00000589604 LLPHQ9BRT6 129 aaKnown RBP12.22□□□□□ -0.45
VPS4B-204ENST00000589604 MKNK2Q9HBH9 465 aa12.22□□□□□ -0.45
VPS4B-204ENST00000589604 AFG3L2Q9Y4W6 797 aa12.22□□□□□ -0.45
VPS4B-204ENST00000589604 ZHX2Q9Y6X8 837 aa12.22□□□□□ -0.45
VPS4B-204ENST00000589604 A0A1W2PRG0 241 aa12.21□□□□□ -0.45
VPS4B-204ENST00000589604 GOLGA8BA8MQT2 603 aa12.21□□□□□ -0.45
VPS4B-204ENST00000589604 MPHOSPH10O00566 681 aaKnown RBP12.21□□□□□ -0.45
VPS4B-204ENST00000589604 BRD1O95696 1058 aa12.21□□□□□ -0.45
VPS4B-204ENST00000589604 CDC27P30260 824 aa12.21□□□□□ -0.45
VPS4B-204ENST00000589604 NUCB2P80303 420 aa12.21□□□□□ -0.45
VPS4B-204ENST00000589604 TFAP4Q01664 338 aa12.21□□□□□ -0.45
VPS4B-204ENST00000589604 PPIL2Q13356 520 aa12.21□□□□□ -0.45
VPS4B-204ENST00000589604 TMTC2Q8N394 836 aa12.21□□□□□ -0.45
VPS4B-204ENST00000589604 ANKS1AQ92625 1134 aa12.21□□□□□ -0.45
VPS4B-204ENST00000589604 TNPO1Q92973 898 aaKnown RBP12.21□□□□□ -0.45
VPS4B-204ENST00000589604 PICK1Q9NRD5 415 aa12.21□□□□□ -0.45
VPS4B-204ENST00000589604 TCP11L1Q9NUJ3 509 aa12.21□□□□□ -0.45
VPS4B-204ENST00000589604 USP17L5A8MUK1 530 aa12.2□□□□□ -0.46
VPS4B-204ENST00000589604 ASNSP08243 561 aa12.2□□□□□ -0.46
VPS4B-204ENST00000589604 FDPSP14324 419 aaKnown RBP12.2□□□□□ -0.46
VPS4B-204ENST00000589604 SYT1P21579 422 aa12.2□□□□□ -0.46
VPS4B-204ENST00000589604 ADD1P35611 737 aaKnown RBP12.2□□□□□ -0.46
VPS4B-204ENST00000589604 ECE1P42892 770 aa12.2□□□□□ -0.46
VPS4B-204ENST00000589604 NOVP48745 357 aa12.2□□□□□ -0.46
VPS4B-204ENST00000589604 KIF23Q02241 960 aaPredicted RBP12.2□□□□□ -0.46
VPS4B-204ENST00000589604 PPATQ06203 517 aa12.2□□□□□ -0.46
VPS4B-204ENST00000589604 SART3Q15020 963 aaKnown RBP12.2□□□□□ -0.46
VPS4B-204ENST00000589604 NTRK3Q16288 839 aa12.2□□□□□ -0.46
VPS4B-204ENST00000589604 KIAA1755Q5JYT7 1200 aa12.2□□□□□ -0.46
VPS4B-204ENST00000589604 IQCA1Q86XH1 822 aa12.2□□□□□ -0.46
VPS4B-204ENST00000589604 CCDC102AQ96A19 550 aa12.2□□□□□ -0.46
VPS4B-204ENST00000589604 PTPN18Q99952 460 aa12.2□□□□□ -0.46
VPS4B-204ENST00000589604 UBAC1Q9BSL1 405 aa12.2□□□□□ -0.46
VPS4B-204ENST00000589604 MYL10Q9BUA6 226 aa12.2□□□□□ -0.46
VPS4B-204ENST00000589604 KCNH4Q9UQ05 1017 aa12.2□□□□□ -0.46
VPS4B-204ENST00000589604 PLIN4Q96Q06 1357 aa12.2□□□□□ -0.46
VPS4B-204ENST00000589604 MYH4Q9Y623 1939 aa12.2□□□□□ -0.46
VPS4B-204ENST00000589604 BAZ2BQ9UIF8 2168 aaKnown RBP12.2□□□□□ -0.46
VPS4B-204ENST00000589604 TRIM75PA6NK02 468 aa12.19□□□□□ -0.46
VPS4B-204ENST00000589604 TSPY2A6NKD2 308 aa12.19□□□□□ -0.46
VPS4B-204ENST00000589604 ZBTB43O43298 467 aa12.19□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 17.4 ms