RNA–Protein interactions for RNA: ENST00000589318.5

DDX39A-209, Transcript of DExD-box helicase 39A, human

TSL 1 (best)

Gene DDX39A, Length 1,903 nt, Biotype retained intron, Subcellular localisation Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
DDX39A-209	ENST00000589318	SHISA4	Q96DD7	197 aa		17.78	■□□□□ 0.44
DDX39A-209	ENST00000589318	FTO	Q9C0B1	505 aa	Known RBP eCLIP	17.78	■□□□□ 0.44
DDX39A-209	ENST00000589318	DNAJC18	Q9H819	358 aa		17.78	■□□□□ 0.44
DDX39A-209	ENST00000589318	SWAP70	Q9UH65	585 aa		17.78	■□□□□ 0.44
DDX39A-209	ENST00000589318	IGKV6D-41	A0A0C4DH26	115 aa		17.77	■□□□□ 0.44
DDX39A-209	ENST00000589318	TCP10	Q12799	353 aa		17.77	■□□□□ 0.44
DDX39A-209	ENST00000589318	NLGN2	Q8NFZ4	835 aa		17.77	■□□□□ 0.44
DDX39A-209	ENST00000589318	CTCFL	Q8NI51	663 aa	Predicted RBP	17.77	■□□□□ 0.44
DDX39A-209	ENST00000589318	WASF1	Q92558	559 aa		17.77	■□□□□ 0.44
DDX39A-209	ENST00000589318	CEP95	Q96GE4	821 aa		17.77	■□□□□ 0.44
DDX39A-209	ENST00000589318	SPATA32	Q96LK8	384 aa		17.77	■□□□□ 0.44
DDX39A-209	ENST00000589318	USP28	Q96RU2	1077 aa		17.77	■□□□□ 0.44
DDX39A-209	ENST00000589318	BCS1L	Q9Y276	419 aa		17.77	■□□□□ 0.44
DDX39A-209	ENST00000589318	SPDYE2B	A6NHP3	402 aa		17.76	■□□□□ 0.43
DDX39A-209	ENST00000589318	PRPF3	O43395	683 aa	Known RBP	17.76	■□□□□ 0.43
DDX39A-209	ENST00000589318	SPDYE6	P0CI01	402 aa		17.76	■□□□□ 0.43
DDX39A-209	ENST00000589318	AKR1B1	P15121	316 aa		17.76	■□□□□ 0.43
DDX39A-209	ENST00000589318	DNTTIP2	Q5QJE6	756 aa	Known RBP	17.76	■□□□□ 0.43
DDX39A-209	ENST00000589318	ATL3	Q6DD88	541 aa		17.76	■□□□□ 0.43
DDX39A-209	ENST00000589318	BRAP	Q7Z569	592 aa		17.76	■□□□□ 0.43
DDX39A-209	ENST00000589318	DHX36	Q9H2U1	1008 aa	Known RBP	17.76	■□□□□ 0.43
DDX39A-209	ENST00000589318	STX8	Q9UNK0	236 aa		17.76	■□□□□ 0.43
DDX39A-209	ENST00000589318	LTBP3	Q9NS15	1303 aa		17.76	■□□□□ 0.43
DDX39A-209	ENST00000589318	ATRNL1	Q5VV63	1379 aa		17.76	■□□□□ 0.43
DDX39A-209	ENST00000589318	COL2A1	P02458	1487 aa	Predicted RBP	17.76	■□□□□ 0.43
DDX39A-209	ENST00000589318	HLA-DOA	P06340	250 aa		17.76	■□□□□ 0.43
DDX39A-209	ENST00000589318	PRELP	P51888	382 aa		17.76	■□□□□ 0.43
DDX39A-209	ENST00000589318	GRM4	Q14833	912 aa		17.76	■□□□□ 0.43
DDX39A-209	ENST00000589318	AGBL3	Q8NEM8	1001 aa		17.76	■□□□□ 0.43
DDX39A-209	ENST00000589318	FEZ1	Q99689	392 aa		17.76	■□□□□ 0.43
DDX39A-209	ENST00000589318	CFAP45	Q9UL16	551 aa		17.76	■□□□□ 0.43
DDX39A-209	ENST00000589318	U2AF2	P26368	475 aa	Known RBP eCLIP	17.75	■□□□□ 0.43	4e-9	■□□□□ 9.1
DDX39A-209	ENST00000589318	MYSM1	Q5VVJ2	828 aa		17.75	■□□□□ 0.43
DDX39A-209	ENST00000589318	STAG2	Q8N3U4	1231 aa		17.75	■□□□□ 0.43
DDX39A-209	ENST00000589318	MAD2L2	Q9UI95	211 aa		17.75	■□□□□ 0.43
DDX39A-209	ENST00000589318	RCOR1	Q9UKL0	485 aa		17.75	■□□□□ 0.43
DDX39A-209	ENST00000589318	hCG_1642624	A0A1W2PR95	340 aa		17.74	■□□□□ 0.43
DDX39A-209	ENST00000589318	MMP1	P03956	469 aa		17.74	■□□□□ 0.43
DDX39A-209	ENST00000589318	METTL16	Q86W50	562 aa	Known RBP	17.74	■□□□□ 0.43
DDX39A-209	ENST00000589318	PGBD1	Q96JS3	809 aa		17.74	■□□□□ 0.43
DDX39A-209	ENST00000589318	TSPY26P	Q9H489	355 aa		17.74	■□□□□ 0.43
DDX39A-209	ENST00000589318	SPTLC3	Q9NUV7	552 aa		17.74	■□□□□ 0.43
DDX39A-209	ENST00000589318	MTMR4	Q9NYA4	1195 aa		17.74	■□□□□ 0.43
DDX39A-209	ENST00000589318		V9GY48	417 aa	Predicted RBP	17.74	■□□□□ 0.43
DDX39A-209	ENST00000589318	MYH4	Q9Y623	1939 aa		17.74	■□□□□ 0.43
DDX39A-209	ENST00000589318	ENTPD3	O75355	529 aa		17.74	■□□□□ 0.43
DDX39A-209	ENST00000589318	KIF5B	P33176	963 aa		17.74	■□□□□ 0.43
DDX39A-209	ENST00000589318	TRIM29	Q14134	588 aa		17.74	■□□□□ 0.43
DDX39A-209	ENST00000589318	SLC35G1	Q2M3R5	365 aa		17.74	■□□□□ 0.43
DDX39A-209	ENST00000589318	RASGRP2	Q7LDG7	609 aa		17.74	■□□□□ 0.43
DDX39A-209	ENST00000589318	BBX	Q8WY36	941 aa	Predicted RBP	17.74	■□□□□ 0.43
DDX39A-209	ENST00000589318	ZNF396	Q96N95	335 aa	Predicted RBP	17.74	■□□□□ 0.43
DDX39A-209	ENST00000589318	PI4KB	Q9UBF8	816 aa		17.74	■□□□□ 0.43
DDX39A-209	ENST00000589318	HDAC9	Q9UKV0	1011 aa		17.74	■□□□□ 0.43
DDX39A-209	ENST00000589318	KCNJ14	Q9UNX9	436 aa		17.74	■□□□□ 0.43
DDX39A-209	ENST00000589318	IGF2BP2	Q9Y6M1	599 aa	Known RBP eCLIP	17.74	■□□□□ 0.43
DDX39A-209	ENST00000589318	TPM3	P06753	285 aa		17.73	■□□□□ 0.43
DDX39A-209	ENST00000589318	TOP1	P11387	765 aa	Known RBP	17.73	■□□□□ 0.43
DDX39A-209	ENST00000589318	RASSF7	Q02833	373 aa		17.73	■□□□□ 0.43
DDX39A-209	ENST00000589318	CEBPZ	Q03701	1054 aa	Known RBP	17.73	■□□□□ 0.43
DDX39A-209	ENST00000589318	CIAPIN1	Q6FI81	312 aa		17.73	■□□□□ 0.43
DDX39A-209	ENST00000589318	ZNF710	Q8N1W2	664 aa		17.73	■□□□□ 0.43
DDX39A-209	ENST00000589318	MTMR14	Q8NCE2	650 aa		17.73	■□□□□ 0.43
DDX39A-209	ENST00000589318	JDP2	Q8WYK2	163 aa		17.73	■□□□□ 0.43
DDX39A-209	ENST00000589318	RTEL1	Q9NZ71	1219 aa		17.73	■□□□□ 0.43
DDX39A-209	ENST00000589318	TAOK2	Q9UL54	1235 aa		17.73	■□□□□ 0.43
DDX39A-209	ENST00000589318	UTRN	P46939	3433 aa		17.73	■□□□□ 0.43
DDX39A-209	ENST00000589318	PALM3	A6NDB9	673 aa	Predicted RBP	17.72	■□□□□ 0.43
DDX39A-209	ENST00000589318	FAM196B	A6NMK8	535 aa		17.72	■□□□□ 0.43
DDX39A-209	ENST00000589318	NOLC1	Q14978	699 aa	Known RBP eCLIP	17.72	■□□□□ 0.43
DDX39A-209	ENST00000589318	DLGAP5	Q15398	846 aa		17.72	■□□□□ 0.43
DDX39A-209	ENST00000589318	OGFOD1	Q8N543	542 aa		17.72	■□□□□ 0.43
DDX39A-209	ENST00000589318	ZBED3	Q96IU2	234 aa	Predicted RBP	17.72	■□□□□ 0.43
DDX39A-209	ENST00000589318	AKAP17A	Q02040	695 aa	Known RBP	17.72	■□□□□ 0.43
DDX39A-209	ENST00000589318	CLEC10A	Q8IUN9	316 aa		17.72	■□□□□ 0.43
DDX39A-209	ENST00000589318	ZNF70	Q9UC06	446 aa	Predicted RBP	17.72	■□□□□ 0.43
DDX39A-209	ENST00000589318	BTBD18	B2RXH4	712 aa		17.71	■□□□□ 0.43
DDX39A-209	ENST00000589318	VEGFA	P15692	232 aa	Predicted RBP	17.71	■□□□□ 0.43
DDX39A-209	ENST00000589318	SPDYE2	Q495Y8	402 aa		17.71	■□□□□ 0.43
DDX39A-209	ENST00000589318	TPRN	Q4KMQ1	711 aa		17.71	■□□□□ 0.43
DDX39A-209	ENST00000589318	TATDN1	Q6P1N9	297 aa		17.71	■□□□□ 0.43
DDX39A-209	ENST00000589318	DIS3L2	Q8IYB7	885 aa	Known RBP	17.71	■□□□□ 0.43
DDX39A-209	ENST00000589318	PHF20	Q9BVI0	1012 aa		17.71	■□□□□ 0.43
DDX39A-209	ENST00000589318	POLR3E	Q9NVU0	708 aa		17.71	■□□□□ 0.43
DDX39A-209	ENST00000589318	VPS54	Q9P1Q0	977 aa		17.71	■□□□□ 0.43
DDX39A-209	ENST00000589318	CLIC4	Q9Y696	253 aa		17.71	■□□□□ 0.43
DDX39A-209	ENST00000589318	CNTNAP1	P78357	1384 aa		17.71	■□□□□ 0.43
DDX39A-209	ENST00000589318	SHTN1	A0MZ66	631 aa		17.7	■□□□□ 0.42
DDX39A-209	ENST00000589318	CLRN2	A0PK11	232 aa		17.7	■□□□□ 0.42
DDX39A-209	ENST00000589318	SYCE3	A1L190	88 aa		17.7	■□□□□ 0.42
DDX39A-209	ENST00000589318	CYTH3	O43739	400 aa		17.7	■□□□□ 0.42
DDX39A-209	ENST00000589318	NPY5R	Q15761	445 aa		17.7	■□□□□ 0.42
DDX39A-209	ENST00000589318	ZSCAN29	Q8IWY8	852 aa	Predicted RBP	17.7	■□□□□ 0.42
DDX39A-209	ENST00000589318	CCDC17	Q96LX7	622 aa		17.7	■□□□□ 0.42
DDX39A-209	ENST00000589318	CBX1	P83916	185 aa		17.7	■□□□□ 0.42
DDX39A-209	ENST00000589318	SYCP1	Q15431	976 aa		17.7	■□□□□ 0.42
DDX39A-209	ENST00000589318	PFKFB3	Q16875	520 aa	Predicted RBP	17.7	■□□□□ 0.42
DDX39A-209	ENST00000589318	SHROOM1	Q2M3G4	852 aa	Predicted RBP	17.7	■□□□□ 0.42
DDX39A-209	ENST00000589318	FOXP4	Q8IVH2	680 aa	Predicted RBP	17.7	■□□□□ 0.42
DDX39A-209	ENST00000589318	NOSTRIN	Q8IVI9	506 aa		17.7	■□□□□ 0.42

Retrieved 100 of 20,778 RNA–protein pairs in 42.6 ms