RNA–Protein interactions for RNA: ENST00000588109.5

LIG3-210, Transcript of DNA ligase 3, humanhuman

TSL 4

Gene LIG3, Length 592 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-210ENST00000588109 GRIN3BO60391 1043 aa6.37□□□□□ -1.39
LIG3-210ENST00000588109 RAD17O75943 681 aa6.37□□□□□ -1.39
LIG3-210ENST00000588109 LMNB1P20700 586 aa6.37□□□□□ -1.39
LIG3-210ENST00000588109 CHMLP26374 656 aa6.37□□□□□ -1.39
LIG3-210ENST00000588109 ATP1A2P50993 1020 aa6.37□□□□□ -1.39
LIG3-210ENST00000588109 EIF6P56537 245 aaKnown RBP6.37□□□□□ -1.39
LIG3-210ENST00000588109 CLN3Q13286 438 aa6.37□□□□□ -1.39
LIG3-210ENST00000588109 NMIQ13287 307 aaPredicted RBP6.37□□□□□ -1.39
LIG3-210ENST00000588109 C8orf34Q49A92 452 aa6.37□□□□□ -1.39
LIG3-210ENST00000588109 STRIP1Q5VSL9 837 aa6.37□□□□□ -1.39
LIG3-210ENST00000588109 NAA16Q6N069 864 aaPredicted RBP6.37□□□□□ -1.39
LIG3-210ENST00000588109 USP17L2Q6R6M4 530 aa6.37□□□□□ -1.39
LIG3-210ENST00000588109 KIAA1211Q6ZU35 1233 aa6.37□□□□□ -1.39
LIG3-210ENST00000588109 USP17L1Q7RTZ2 530 aa6.37□□□□□ -1.39
LIG3-210ENST00000588109 CCDC97Q96F63 343 aaPredicted RBP6.37□□□□□ -1.39
LIG3-210ENST00000588109 NOL10Q9BSC4 688 aaKnown RBP6.37□□□□□ -1.39
LIG3-210ENST00000588109 PPP1R12CQ9BZL4 782 aa6.37□□□□□ -1.39
LIG3-210ENST00000588109 RAB6BQ9NRW1 208 aa6.37□□□□□ -1.39
LIG3-210ENST00000588109 MAST2Q6P0Q8 1798 aa6.36□□□□□ -1.39
LIG3-210ENST00000588109 MAST3O60307 1309 aa6.36□□□□□ -1.39
LIG3-210ENST00000588109 ZNF532Q9HCE3 1301 aa6.36□□□□□ -1.39
LIG3-210ENST00000588109 PALM3A6NDB9 673 aaPredicted RBP6.36□□□□□ -1.39
LIG3-210ENST00000588109 PDE6AP16499 860 aa6.36□□□□□ -1.39
LIG3-210ENST00000588109 CYP7A1P22680 504 aa6.36□□□□□ -1.39
LIG3-210ENST00000588109 LMOD1P29536 600 aaPredicted RBP6.36□□□□□ -1.39
LIG3-210ENST00000588109 PRDX5P30044 214 aa6.36□□□□□ -1.39
LIG3-210ENST00000588109 GPC1P35052 558 aa6.36□□□□□ -1.39
LIG3-210ENST00000588109 ADD2P35612 726 aa6.36□□□□□ -1.39
LIG3-210ENST00000588109 RNF144AP50876 292 aaPredicted RBP6.36□□□□□ -1.39
LIG3-210ENST00000588109 MFAP1P55081 439 aaKnown RBP6.36□□□□□ -1.39
LIG3-210ENST00000588109 GSTO1P78417 241 aa6.36□□□□□ -1.39
LIG3-210ENST00000588109 MECOMQ03112 1051 aa6.36□□□□□ -1.39
LIG3-210ENST00000588109 TNIP1Q15025 636 aa6.36□□□□□ -1.39
LIG3-210ENST00000588109 UBE3CQ15386 1083 aa6.36□□□□□ -1.39
LIG3-210ENST00000588109 DACT2Q5SW24 774 aa6.36□□□□□ -1.39
LIG3-210ENST00000588109 CIAPIN1Q6FI81 312 aa6.36□□□□□ -1.39
LIG3-210ENST00000588109 LYSMD3Q7Z3D4 306 aa6.36□□□□□ -1.39
LIG3-210ENST00000588109 PRICKLE2Q7Z3G6 844 aa6.36□□□□□ -1.39
LIG3-210ENST00000588109 TICAM2Q86XR7 235 aa6.36□□□□□ -1.39
LIG3-210ENST00000588109 KDF1Q8NAX2 398 aaPredicted RBP6.36□□□□□ -1.39
LIG3-210ENST00000588109 APPBP2Q92624 585 aa6.36□□□□□ -1.39
LIG3-210ENST00000588109 AIDAQ96BJ3 306 aa6.36□□□□□ -1.39
LIG3-210ENST00000588109 FAM227BQ96M60 508 aa6.36□□□□□ -1.39
LIG3-210ENST00000588109 ESYT1Q9BSJ8 1104 aa6.36□□□□□ -1.39
LIG3-210ENST00000588109 MXD3Q9BW11 206 aa6.36□□□□□ -1.39
LIG3-210ENST00000588109 UPF2Q9HAU5 1272 aaKnown RBP6.36□□□□□ -1.39
LIG3-210ENST00000588109 KCNQ5Q9NR82 932 aa6.36□□□□□ -1.39
LIG3-210ENST00000588109 HELLSQ9NRZ9 838 aa6.36□□□□□ -1.39
LIG3-210ENST00000588109 MKRN1Q9UHC7 482 aaKnown RBP6.36□□□□□ -1.39
LIG3-210ENST00000588109 TTF2Q9UNY4 1162 aaKnown RBP6.36□□□□□ -1.39
LIG3-210ENST00000588109 GJA3Q9Y6H8 435 aa6.36□□□□□ -1.39
LIG3-210ENST00000588109 MYH7P12883 1935 aa6.36□□□□□ -1.39
LIG3-210ENST00000588109 CHD4Q14839 1912 aa6.36□□□□□ -1.39
LIG3-210ENST00000588109 DOCK2Q92608 1830 aa6.36□□□□□ -1.39
LIG3-210ENST00000588109 COL4A5P29400 1685 aa6.36□□□□□ -1.39
LIG3-210ENST00000588109 CCDC88AQ3V6T2 1871 aa6.35□□□□□ -1.39
LIG3-210ENST00000588109 MYO5AQ9Y4I1 1855 aaKnown RBP6.35□□□□□ -1.39
LIG3-210ENST00000588109 MYO3BQ8WXR4 1341 aa6.35□□□□□ -1.39
LIG3-210ENST00000588109 RAD50Q92878 1312 aa6.35□□□□□ -1.39
LIG3-210ENST00000588109 A0A0D9SFI3 127 aa6.35□□□□□ -1.39
LIG3-210ENST00000588109 YDJCA8MPS7 323 aa6.35□□□□□ -1.39
LIG3-210ENST00000588109 PSMD14O00487 310 aa6.35□□□□□ -1.39
LIG3-210ENST00000588109 IGSF3O75054 1194 aa6.35□□□□□ -1.39
LIG3-210ENST00000588109 REC8O95072 547 aa6.35□□□□□ -1.39
LIG3-210ENST00000588109 CHGBP05060 677 aa6.35□□□□□ -1.39
LIG3-210ENST00000588109 LDHCP07864 332 aa6.35□□□□□ -1.39
LIG3-210ENST00000588109 RBM5P52756 815 aaKnown RBP eCLIP6.35□□□□□ -1.39
LIG3-210ENST00000588109 FKBP1AP62942 108 aaKnown RBP6.35□□□□□ -1.39
LIG3-210ENST00000588109 CENPCQ03188 943 aa6.35□□□□□ -1.39
LIG3-210ENST00000588109 CXCL9Q07325 125 aa6.35□□□□□ -1.39
LIG3-210ENST00000588109 GRIK5Q16478 980 aa6.35□□□□□ -1.39
LIG3-210ENST00000588109 MCMDC2Q4G0Z9 681 aa6.35□□□□□ -1.39
LIG3-210ENST00000588109 ZMYM1Q5SVZ6 1142 aa6.35□□□□□ -1.39
LIG3-210ENST00000588109 C9orf131Q5VYM1 1079 aa6.35□□□□□ -1.39
LIG3-210ENST00000588109 TMEM214Q6NUQ4 689 aaKnown RBP6.35□□□□□ -1.39
LIG3-210ENST00000588109 TMED8Q6PL24 325 aaPredicted RBP6.35□□□□□ -1.39
LIG3-210ENST00000588109 KIAA0825Q8IV33 1275 aa6.35□□□□□ -1.39
LIG3-210ENST00000588109 CERS5Q8N5B7 392 aa6.35□□□□□ -1.39
LIG3-210ENST00000588109 MIGA1Q8NAN2 632 aa6.35□□□□□ -1.39
LIG3-210ENST00000588109 NSUN4Q96CB9 384 aaKnown RBP6.35□□□□□ -1.39
LIG3-210ENST00000588109 UCN2Q96RP3 112 aa6.35□□□□□ -1.39
LIG3-210ENST00000588109 BACH2Q9BYV9 841 aa6.35□□□□□ -1.39
LIG3-210ENST00000588109 ANO2Q9NQ90 1003 aa6.35□□□□□ -1.39
LIG3-210ENST00000588109 RNF181Q9P0P0 153 aa6.35□□□□□ -1.39
LIG3-210ENST00000588109 DNMT3LQ9UJW3 386 aa6.35□□□□□ -1.39
LIG3-210ENST00000588109 SUGT1Q9Y2Z0 365 aa6.35□□□□□ -1.39
LIG3-210ENST00000588109 SCN9AQ15858 1988 aa6.35□□□□□ -1.39
LIG3-210ENST00000588109 TIAM2Q8IVF5 1701 aa6.34□□□□□ -1.39
LIG3-210ENST00000588109 MROH7-TTC4A0A0A0MT08 1334 aa6.34□□□□□ -1.39
LIG3-210ENST00000588109 CCDC171Q6TFL3 1326 aa6.34□□□□□ -1.39
LIG3-210ENST00000588109 TCRBV5S4A2TA0A5A2 114 aa6.34□□□□□ -1.39
LIG3-210ENST00000588109 M0R2C6 588 aa6.34□□□□□ -1.39
LIG3-210ENST00000588109 FZD9O00144 591 aa6.34□□□□□ -1.39
LIG3-210ENST00000588109 BACH1O14867 736 aa6.34□□□□□ -1.39
LIG3-210ENST00000588109 SGSM2O43147 1006 aa6.34□□□□□ -1.39
LIG3-210ENST00000588109 MBD4O95243 580 aa6.34□□□□□ -1.39
LIG3-210ENST00000588109 BAG3O95817 575 aa6.34□□□□□ -1.39
LIG3-210ENST00000588109 APPP05067 770 aa6.34□□□□□ -1.39
LIG3-210ENST00000588109 VIL1P09327 827 aaKnown RBP6.34□□□□□ -1.39
LIG3-210ENST00000588109 SCNN1DP51172 638 aa6.34□□□□□ -1.39
Retrieved 100 of 20,778 RNA–protein pairs in 25.9 ms