RNA–Protein interactions for RNA: ENST00000583877.5

NUP85-223, Transcript of nucleoporin 85, human

TSL 3

Gene NUP85, Length 575 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
NUP85-223	ENST00000583877	PRKAG2	Q9UGJ0	569 aa		10.69	□□□□□ -0.7
NUP85-223	ENST00000583877	DDX20	Q9UHI6	824 aa	Known RBP	10.69	□□□□□ -0.7
NUP85-223	ENST00000583877	SAP30BP	Q9UHR5	308 aa	Known RBP	10.69	□□□□□ -0.7
NUP85-223	ENST00000583877	PNMA6E	A0A0J9YXQ4	647 aa		10.68	□□□□□ -0.7
NUP85-223	ENST00000583877	CNGA1	P29973	690 aa		10.68	□□□□□ -0.7
NUP85-223	ENST00000583877	ATP2B2	Q01814	1243 aa		10.68	□□□□□ -0.7
NUP85-223	ENST00000583877	GRB14	Q14449	540 aa		10.68	□□□□□ -0.7
NUP85-223	ENST00000583877	ZNF697	Q5TEC3	545 aa		10.68	□□□□□ -0.7
NUP85-223	ENST00000583877	WDR78	Q5VTH9	848 aa		10.68	□□□□□ -0.7
NUP85-223	ENST00000583877	TATDN1	Q6P1N9	297 aa		10.68	□□□□□ -0.7
NUP85-223	ENST00000583877	CERS3	Q8IU89	383 aa		10.68	□□□□□ -0.7
NUP85-223	ENST00000583877	ZNF512B	Q96KM6	892 aa	Predicted RBP	10.68	□□□□□ -0.7
NUP85-223	ENST00000583877	FEZ1	Q99689	392 aa		10.68	□□□□□ -0.7
NUP85-223	ENST00000583877	KIAA1683	Q9H0B3	1180 aa		10.68	□□□□□ -0.7
NUP85-223	ENST00000583877	IVNS1ABP	Q9Y6Y0	642 aa		10.68	□□□□□ -0.7
NUP85-223	ENST00000583877	MCM3AP	O60318	1980 aa		10.68	□□□□□ -0.7
NUP85-223	ENST00000583877	IGHA2	P01877	340 aa		10.67	□□□□□ -0.7
NUP85-223	ENST00000583877	VCAM1	P19320	739 aa		10.67	□□□□□ -0.7
NUP85-223	ENST00000583877	ATN1	P54259	1190 aa	Predicted RBP	10.67	□□□□□ -0.7
NUP85-223	ENST00000583877	RTP1	P59025	263 aa		10.67	□□□□□ -0.7
NUP85-223	ENST00000583877	ZYX	Q15942	572 aa	Known RBP	10.67	□□□□□ -0.7
NUP85-223	ENST00000583877	TNNI3K	Q59H18	835 aa		10.67	□□□□□ -0.7
NUP85-223	ENST00000583877	FAM161B	Q96MY7	647 aa		10.67	□□□□□ -0.7
NUP85-223	ENST00000583877	EHD4	Q9H223	541 aa		10.67	□□□□□ -0.7
NUP85-223	ENST00000583877	BTBD7	Q9P203	1132 aa		10.67	□□□□□ -0.7
NUP85-223	ENST00000583877	SERPINB13	Q9UIV8	391 aa		10.67	□□□□□ -0.7
NUP85-223	ENST00000583877	NDUFB9	Q9Y6M9	179 aa		10.67	□□□□□ -0.7
NUP85-223	ENST00000583877	FPGT-TNNI3K	V9GXZ4	949 aa		10.67	□□□□□ -0.7
NUP85-223	ENST00000583877	REV3L	O60673	3130 aa		10.67	□□□□□ -0.7
NUP85-223	ENST00000583877	GBF1	Q92538	1859 aa		10.66	□□□□□ -0.7
NUP85-223	ENST00000583877	BDP1	A6H8Y1	2624 aa		10.66	□□□□□ -0.7
NUP85-223	ENST00000583877	CHD9	Q3L8U1	2897 aa		10.66	□□□□□ -0.7
NUP85-223	ENST00000583877	IPO8	O15397	1037 aa	Known RBP	10.66	□□□□□ -0.7
NUP85-223	ENST00000583877	CYBA	P13498	195 aa		10.66	□□□□□ -0.7
NUP85-223	ENST00000583877	CYP2C19	P33261	490 aa		10.66	□□□□□ -0.7
NUP85-223	ENST00000583877	ZAP70	P43403	619 aa		10.66	□□□□□ -0.7
NUP85-223	ENST00000583877	DYNLL1	P63167	89 aa	Known RBP	10.66	□□□□□ -0.7
NUP85-223	ENST00000583877	RAB3GAP1	Q15042	981 aa		10.66	□□□□□ -0.7
NUP85-223	ENST00000583877	CERKL	Q49MI3	558 aa	Predicted RBP	10.66	□□□□□ -0.7
NUP85-223	ENST00000583877	ARRDC4	Q8NCT1	418 aa		10.66	□□□□□ -0.7
NUP85-223	ENST00000583877	TRPV1	Q8NER1	839 aa		10.66	□□□□□ -0.7
NUP85-223	ENST00000583877	NPLOC4	Q8TAT6	608 aa		10.66	□□□□□ -0.7
NUP85-223	ENST00000583877	DBNDD2	Q9BQY9	259 aa		10.66	□□□□□ -0.7
NUP85-223	ENST00000583877	PIH1D3	Q9NQM4	214 aa	Known RBP	10.66	□□□□□ -0.7
NUP85-223	ENST00000583877	SPDYE16	A6NNV3	312 aa	Predicted RBP	10.65	□□□□□ -0.7
NUP85-223	ENST00000583877	KBTBD13	C9JR72	458 aa		10.65	□□□□□ -0.7
NUP85-223	ENST00000583877	STRN	O43815	780 aa		10.65	□□□□□ -0.7
NUP85-223	ENST00000583877	TRIM27	P14373	513 aa		10.65	□□□□□ -0.7
NUP85-223	ENST00000583877	CYP7A1	P22680	504 aa		10.65	□□□□□ -0.7
NUP85-223	ENST00000583877	USP5	P45974	858 aa		10.65	□□□□□ -0.7
NUP85-223	ENST00000583877	SNX17	Q15036	470 aa		10.65	□□□□□ -0.7
NUP85-223	ENST00000583877	SHH	Q15465	462 aa		10.65	□□□□□ -0.7
NUP85-223	ENST00000583877	ABCB5	Q2M3G0	1257 aa		10.65	□□□□□ -0.7
NUP85-223	ENST00000583877	GJC2	Q5T442	439 aa	Predicted RBP	10.65	□□□□□ -0.7
NUP85-223	ENST00000583877	OLFML2B	Q68BL8	750 aa		10.65	□□□□□ -0.7
NUP85-223	ENST00000583877	TMED8	Q6PL24	325 aa	Predicted RBP	10.65	□□□□□ -0.7
NUP85-223	ENST00000583877	SLC39A5	Q6ZMH5	540 aa		10.65	□□□□□ -0.7
NUP85-223	ENST00000583877	DPP9	Q86TI2	863 aa		10.65	□□□□□ -0.7
NUP85-223	ENST00000583877	TTC6	Q86TZ1	520 aa		10.65	□□□□□ -0.7
NUP85-223	ENST00000583877	EFCAB3	Q8N7B9	438 aa		10.65	□□□□□ -0.7
NUP85-223	ENST00000583877	CDX2	Q99626	313 aa	Predicted RBP	10.65	□□□□□ -0.7
NUP85-223	ENST00000583877	SEMA6B	Q9H3T3	888 aa		10.65	□□□□□ -0.7
NUP85-223	ENST00000583877	RPAP3	Q9H6T3	665 aa	Predicted RBP	10.65	□□□□□ -0.7
NUP85-223	ENST00000583877	CABP5	Q9NP86	173 aa		10.65	□□□□□ -0.7
NUP85-223	ENST00000583877	WDR70	Q9NW82	654 aa		10.65	□□□□□ -0.7
NUP85-223	ENST00000583877	ATP11B	Q9Y2G3	1177 aa		10.65	□□□□□ -0.7
NUP85-223	ENST00000583877	TRANK1	O15050	2925 aa		10.64	□□□□□ -0.71
NUP85-223	ENST00000583877	MYH4	Q9Y623	1939 aa		10.64	□□□□□ -0.71
NUP85-223	ENST00000583877	ADORA2A	P29274	412 aa		10.64	□□□□□ -0.71
NUP85-223	ENST00000583877	SMAD3	P84022	425 aa	Known RBP	10.64	□□□□□ -0.71
NUP85-223	ENST00000583877	OS9	Q13438	667 aa	Predicted RBP	10.64	□□□□□ -0.71
NUP85-223	ENST00000583877	MIGA1	Q8NAN2	632 aa		10.64	□□□□□ -0.71
NUP85-223	ENST00000583877	MAFA	Q8NHW3	353 aa	Predicted RBP	10.64	□□□□□ -0.71
NUP85-223	ENST00000583877	ACER1	Q8TDN7	264 aa		10.64	□□□□□ -0.71
NUP85-223	ENST00000583877	SSH3	Q8TE77	659 aa		10.64	□□□□□ -0.71
NUP85-223	ENST00000583877	CHD7	Q9P2D1	2997 aa		10.64	□□□□□ -0.71
NUP85-223	ENST00000583877	SEPT4	O43236	478 aa		10.63	□□□□□ -0.71
NUP85-223	ENST00000583877	IDH1	O75874	414 aa	Known RBP	10.63	□□□□□ -0.71
NUP85-223	ENST00000583877	SHMT1	P34896	483 aa		10.63	□□□□□ -0.71
NUP85-223	ENST00000583877	COG2	Q14746	738 aa		10.63	□□□□□ -0.71
NUP85-223	ENST00000583877	C9orf50	Q5SZB4	431 aa		10.63	□□□□□ -0.71
NUP85-223	ENST00000583877	C1orf53	Q5VUE5	145 aa		10.63	□□□□□ -0.71
NUP85-223	ENST00000583877	MAGEB6	Q8N7X4	407 aa		10.63	□□□□□ -0.71
NUP85-223	ENST00000583877	SHCBP1	Q8NEM2	672 aa		10.63	□□□□□ -0.71
NUP85-223	ENST00000583877	BAD	Q92934	168 aa		10.63	□□□□□ -0.71
NUP85-223	ENST00000583877	MOV10L1	Q9BXT6	1211 aa	Known RBP	10.63	□□□□□ -0.71
NUP85-223	ENST00000583877	PRDM5	Q9NQX1	630 aa	Predicted RBP	10.63	□□□□□ -0.71
NUP85-223	ENST00000583877	HOXC10	Q9NYD6	342 aa		10.63	□□□□□ -0.71
NUP85-223	ENST00000583877	DBNL	Q9UJU6	430 aa	Known RBP	10.63	□□□□□ -0.71
NUP85-223	ENST00000583877	SURF6	O75683	361 aa	Known RBP	10.62	□□□□□ -0.71
NUP85-223	ENST00000583877	CD44	P16070	742 aa	Known RBP	10.62	□□□□□ -0.71
NUP85-223	ENST00000583877	GUCY1A2	P33402	732 aa		10.62	□□□□□ -0.71
NUP85-223	ENST00000583877	PLCD1	P51178	756 aa		10.62	□□□□□ -0.71
NUP85-223	ENST00000583877	ATP8B2	P98198	1209 aa		10.62	□□□□□ -0.71
NUP85-223	ENST00000583877	TRIM60	Q495X7	471 aa		10.62	□□□□□ -0.71
NUP85-223	ENST00000583877	ABRA	Q8N0Z2	381 aa		10.62	□□□□□ -0.71
NUP85-223	ENST00000583877	SPATC1L	Q9H0A9	340 aa		10.62	□□□□□ -0.71
NUP85-223	ENST00000583877	TTYH1	Q9H313	450 aa	Predicted RBP	10.62	□□□□□ -0.71
NUP85-223	ENST00000583877	PDLIM7	Q9NR12	457 aa		10.62	□□□□□ -0.71
NUP85-223	ENST00000583877	SLC5A4	Q9NY91	659 aa		10.62	□□□□□ -0.71

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