RNA–Protein interactions for RNA: ENST00000581570.5

SS18-219, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 5

Gene SS18, Length 571 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-219ENST00000581570 FRMPD3Q5JV73 1810 aa15.57■□□□□ 0.08
SS18-219ENST00000581570 COBLO75128 1261 aa15.56■□□□□ 0.08
SS18-219ENST00000581570 COL9A1P20849 921 aa15.56■□□□□ 0.08
SS18-219ENST00000581570 COG2Q14746 738 aa15.56■□□□□ 0.08
SS18-219ENST00000581570 TNNI3KQ59H18 835 aa15.56■□□□□ 0.08
SS18-219ENST00000581570 TJAP1Q5JTD0 557 aa15.56■□□□□ 0.08
SS18-219ENST00000581570 TTC6Q86TZ1 520 aa15.56■□□□□ 0.08
SS18-219ENST00000581570 MIGA1Q8NAN2 632 aa15.56■□□□□ 0.08
SS18-219ENST00000581570 ARHGAP45Q92619 1136 aa15.56■□□□□ 0.08
SS18-219ENST00000581570 SPATC1LQ9H0A9 340 aa15.56■□□□□ 0.08
SS18-219ENST00000581570 SLC5A4Q9NY91 659 aa15.56■□□□□ 0.08
SS18-219ENST00000581570 FPGT-TNNI3KV9GXZ4 949 aa15.56■□□□□ 0.08
SS18-219ENST00000581570 LTBP2Q14767 1821 aa15.56■□□□□ 0.08
SS18-219ENST00000581570 ERCC3P19447 782 aa15.55■□□□□ 0.08
SS18-219ENST00000581570 ITGB8P26012 769 aa15.55■□□□□ 0.08
SS18-219ENST00000581570 CERS3Q8IU89 383 aa15.55■□□□□ 0.08
SS18-219ENST00000581570 SHCBP1Q8NEM2 672 aa15.55■□□□□ 0.08
SS18-219ENST00000581570 ZNF512BQ96KM6 892 aaPredicted RBP15.55■□□□□ 0.08
SS18-219ENST00000581570 SPTBN5Q9NRC6 3674 aaKnown RBP15.54■□□□□ 0.08
SS18-219ENST00000581570 TNFRSF10AO00220 468 aa15.54■□□□□ 0.08
SS18-219ENST00000581570 IDH1O75874 414 aaKnown RBP15.54■□□□□ 0.08
SS18-219ENST00000581570 CLTBP09497 229 aa15.54■□□□□ 0.08
SS18-219ENST00000581570 GUCY1A2P33402 732 aa15.54■□□□□ 0.08
SS18-219ENST00000581570 EPHB4P54760 987 aa15.54■□□□□ 0.08
SS18-219ENST00000581570 GRIN2CQ14957 1233 aa15.54■□□□□ 0.08
SS18-219ENST00000581570 FAM47AQ5JRC9 791 aa15.54■□□□□ 0.08
SS18-219ENST00000581570 USP38Q8NB14 1042 aa15.54■□□□□ 0.08
SS18-219ENST00000581570 PRUNE2Q8WUY3 3088 aa15.54■□□□□ 0.08
SS18-219ENST00000581570 HSFX4A0A1B0GTS1 333 aaPredicted RBP15.53■□□□□ 0.08
SS18-219ENST00000581570 HSFX3A0A1B0GWH4 333 aaPredicted RBP15.53■□□□□ 0.08
SS18-219ENST00000581570 RAG1P15918 1043 aa15.53■□□□□ 0.08
SS18-219ENST00000581570 SHMT1P34896 483 aa15.53■□□□□ 0.08
SS18-219ENST00000581570 RARSP54136 660 aaKnown RBP15.53■□□□□ 0.08
SS18-219ENST00000581570 OS9Q13438 667 aaPredicted RBP15.53■□□□□ 0.08
SS18-219ENST00000581570 PLS1Q14651 629 aa15.53■□□□□ 0.08
SS18-219ENST00000581570 SEPT2Q15019 361 aa15.53■□□□□ 0.08
SS18-219ENST00000581570 NCAPG2Q86XI2 1143 aa15.53■□□□□ 0.08
SS18-219ENST00000581570 MAML3Q96JK9 1138 aa15.53■□□□□ 0.08
SS18-219ENST00000581570 TANGO6Q9C0B7 1094 aa15.53■□□□□ 0.08
SS18-219ENST00000581570 MROH8Q9H579 483 aa15.53■□□□□ 0.08
SS18-219ENST00000581570 PHF24Q9UPV7 400 aa15.53■□□□□ 0.08
SS18-219ENST00000581570 RLFQ13129 1914 aa15.53■□□□□ 0.08
SS18-219ENST00000581570 A0A1W2PRG0 241 aa15.52■□□□□ 0.08
SS18-219ENST00000581570 KIAA0355O15063 1070 aa15.52■□□□□ 0.08
SS18-219ENST00000581570 PLCD1P51178 756 aa15.52■□□□□ 0.08
SS18-219ENST00000581570 ABRAQ8N0Z2 381 aa15.52■□□□□ 0.08
SS18-219ENST00000581570 MAGEB6Q8N7X4 407 aa15.52■□□□□ 0.08
SS18-219ENST00000581570 MB21D1Q8N884 522 aa15.52■□□□□ 0.08
SS18-219ENST00000581570 XPNPEP3Q9NQH7 507 aa15.52■□□□□ 0.08
SS18-219ENST00000581570 MPHOSPH10O00566 681 aaKnown RBP15.51■□□□□ 0.07
SS18-219ENST00000581570 PQBP1O60828 265 aaKnown RBP15.51■□□□□ 0.07
SS18-219ENST00000581570 POLR3DP05423 398 aaPredicted RBP15.51■□□□□ 0.07
SS18-219ENST00000581570 RARBP10826 455 aa15.51■□□□□ 0.07
SS18-219ENST00000581570 DNAJB2P25686 324 aa15.51■□□□□ 0.07
SS18-219ENST00000581570 DSG3P32926 999 aa15.51■□□□□ 0.07
SS18-219ENST00000581570 FPGSQ05932 587 aa15.51■□□□□ 0.07
SS18-219ENST00000581570 RNF180Q86T96 592 aa15.51■□□□□ 0.07
SS18-219ENST00000581570 ZNF576Q9H609 170 aa15.51■□□□□ 0.07
SS18-219ENST00000581570 TMEM39AQ9NV64 488 aa15.51■□□□□ 0.07
SS18-219ENST00000581570 NRBP1Q9UHY1 535 aa15.51■□□□□ 0.07
SS18-219ENST00000581570 PGK1P00558 417 aa15.5■□□□□ 0.07
SS18-219ENST00000581570 FCER1AP12319 257 aa15.5■□□□□ 0.07
SS18-219ENST00000581570 POLA2Q14181 598 aa15.5■□□□□ 0.07
SS18-219ENST00000581570 DBNLQ9UJU6 430 aaKnown RBP15.5■□□□□ 0.07
SS18-219ENST00000581570 FOCADQ5VW36 1801 aa15.5■□□□□ 0.07
SS18-219ENST00000581570 IPO8O15397 1037 aaKnown RBP15.49■□□□□ 0.07
SS18-219ENST00000581570 SURF6O75683 361 aaKnown RBP15.49■□□□□ 0.07
SS18-219ENST00000581570 ATXN8OSP0DMR3 200 aa15.49■□□□□ 0.07
SS18-219ENST00000581570 GABPAQ06546 454 aa15.49■□□□□ 0.07
SS18-219ENST00000581570 MAP3K12Q12852 859 aa15.49■□□□□ 0.07
SS18-219ENST00000581570 PPM1EQ8WY54 764 aa15.49■□□□□ 0.07
SS18-219ENST00000581570 TIFAQ96CG3 184 aa15.49■□□□□ 0.07
SS18-219ENST00000581570 ATG4CQ96DT6 458 aa15.49■□□□□ 0.07
SS18-219ENST00000581570 CCDC8Q9H0W5 538 aaPredicted RBP15.49■□□□□ 0.07
SS18-219ENST00000581570 CDK5RAP2Q96SN8 1893 aa15.48■□□□□ 0.07
SS18-219ENST00000581570 A0A1W2PQ45 241 aaPredicted RBP15.48■□□□□ 0.07
SS18-219ENST00000581570 A0A1W2PQY0 241 aa15.48■□□□□ 0.07
SS18-219ENST00000581570 DCDC2CA8MYV0 355 aa15.48■□□□□ 0.07
SS18-219ENST00000581570 FLOT1O75955 427 aa15.48■□□□□ 0.07
SS18-219ENST00000581570 TRIM27P14373 513 aa15.48■□□□□ 0.07
SS18-219ENST00000581570 FAAP100Q0VG06 881 aa15.48■□□□□ 0.07
SS18-219ENST00000581570 KIAA1755Q5JYT7 1200 aa15.48■□□□□ 0.07
SS18-219ENST00000581570 SLC44A5Q8NCS7 719 aa15.48■□□□□ 0.07
SS18-219ENST00000581570 GAS2L1Q99501 681 aaPredicted RBP15.48■□□□□ 0.07
SS18-219ENST00000581570 TLR7Q9NYK1 1049 aaKnown RBP15.48■□□□□ 0.07
SS18-219ENST00000581570 TNNQ9UQP3 1299 aa15.48■□□□□ 0.07
SS18-219ENST00000581570 ZNF236Q9UL36 1845 aa15.47■□□□□ 0.07
SS18-219ENST00000581570 SLC25A27O95847 323 aa15.47■□□□□ 0.07
SS18-219ENST00000581570 ATP8B2P98198 1209 aa15.47■□□□□ 0.07
SS18-219ENST00000581570 TMED8Q6PL24 325 aaPredicted RBP15.47■□□□□ 0.07
SS18-219ENST00000581570 SSH3Q8TE77 659 aa15.47■□□□□ 0.07
SS18-219ENST00000581570 ATXN2LQ8WWM7 1075 aaKnown RBP15.47■□□□□ 0.07
SS18-219ENST00000581570 TOX2Q96NM4 488 aa15.47■□□□□ 0.07
SS18-219ENST00000581570 MMP19Q99542 508 aa15.47■□□□□ 0.07
SS18-219ENST00000581570 RIOK1Q9BRS2 568 aaKnown RBP15.47■□□□□ 0.07
SS18-219ENST00000581570 TINF2Q9BSI4 451 aa15.47■□□□□ 0.07
SS18-219ENST00000581570 ANTXR1Q9H6X2 564 aa15.47■□□□□ 0.07
SS18-219ENST00000581570 MCM9Q9NXL9 1143 aa15.47■□□□□ 0.07
SS18-219ENST00000581570 RAPGEFL1Q9UHV5 662 aa15.47■□□□□ 0.07
SS18-219ENST00000581570 CDH23Q9H251 3354 aa15.47■□□□□ 0.07
Retrieved 100 of 20,778 RNA–protein pairs in 15.1 ms