RNA–Protein interactions for RNA: ENST00000580419.5

SMARCE1-216, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1, humanhuman

TSL 1 (best) BASIC

Gene SMARCE1, Length 1,228 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCE1-216ENST00000580419 APPBP2Q92624 585 aa17.42■□□□□ 0.38
SMARCE1-216ENST00000580419 STRBPQ96SI9 672 aaKnown RBP17.42■□□□□ 0.38
SMARCE1-216ENST00000580419 RPAP3Q9H6T3 665 aaPredicted RBP17.42■□□□□ 0.38
SMARCE1-216ENST00000580419 KANSL2Q9H9L4 492 aa17.42■□□□□ 0.38
SMARCE1-216ENST00000580419 SYNPO2Q9UMS6 1093 aa17.42■□□□□ 0.38
SMARCE1-216ENST00000580419 ROBO3Q96MS0 1386 aa17.41■□□□□ 0.38
SMARCE1-216ENST00000580419 A0A1W2PPC1 479 aa17.41■□□□□ 0.38
SMARCE1-216ENST00000580419 ERC2O15083 957 aa17.41■□□□□ 0.38
SMARCE1-216ENST00000580419 PTPREP23469 700 aa17.41■□□□□ 0.38
SMARCE1-216ENST00000580419 CDK8P49336 464 aa17.41■□□□□ 0.38
SMARCE1-216ENST00000580419 GRB14Q14449 540 aa17.41■□□□□ 0.38
SMARCE1-216ENST00000580419 SIAH1Q8IUQ4 282 aa17.41■□□□□ 0.38
SMARCE1-216ENST00000580419 ABRAQ8N0Z2 381 aa17.41■□□□□ 0.38
SMARCE1-216ENST00000580419 PUS7LQ9H0K6 701 aaKnown RBP17.41■□□□□ 0.38
SMARCE1-216ENST00000580419 VCPKMTQ9H867 229 aa17.41■□□□□ 0.38
SMARCE1-216ENST00000580419 WDR46O15213 610 aaKnown RBP17.4■□□□□ 0.38
SMARCE1-216ENST00000580419 PRKAB2O43741 272 aa17.4■□□□□ 0.38
SMARCE1-216ENST00000580419 ZKSCAN1P17029 563 aaPredicted RBP17.4■□□□□ 0.38
SMARCE1-216ENST00000580419 CYP2B6P20813 491 aa17.4■□□□□ 0.38
SMARCE1-216ENST00000580419 ICA1Q05084 483 aa17.4■□□□□ 0.38
SMARCE1-216ENST00000580419 CTR9Q6PD62 1173 aa17.4■□□□□ 0.38
SMARCE1-216ENST00000580419 DPF3Q92784 378 aa17.4■□□□□ 0.38
SMARCE1-216ENST00000580419 PAGR1Q9BTK6 254 aa17.4■□□□□ 0.38
SMARCE1-216ENST00000580419 PRO3102Q9H379 93 aa17.4■□□□□ 0.38
SMARCE1-216ENST00000580419 ADAMTS5Q9UNA0 930 aa17.4■□□□□ 0.38
SMARCE1-216ENST00000580419 SLC4A4Q9Y6R1 1079 aa17.4■□□□□ 0.38
SMARCE1-216ENST00000580419 MPHOSPH10O00566 681 aaKnown RBP17.39■□□□□ 0.37
SMARCE1-216ENST00000580419 RNF113AO15541 343 aaKnown RBP17.39■□□□□ 0.37
SMARCE1-216ENST00000580419 SMARCA5O60264 1052 aaPredicted RBP17.39■□□□□ 0.37
SMARCE1-216ENST00000580419 MSCO60682 206 aa17.39■□□□□ 0.37
SMARCE1-216ENST00000580419 CYP2D6P10635 497 aa17.39■□□□□ 0.37
SMARCE1-216ENST00000580419 PRKAR2AP13861 404 aaKnown RBP17.39■□□□□ 0.37
SMARCE1-216ENST00000580419 ZYXQ15942 572 aaKnown RBP17.39■□□□□ 0.37
SMARCE1-216ENST00000580419 NBPF3Q9H094 633 aa17.39■□□□□ 0.37
SMARCE1-216ENST00000580419 MROH8Q9H579 483 aa17.39■□□□□ 0.37
SMARCE1-216ENST00000580419 ZNF287Q9HBT7 754 aa17.39■□□□□ 0.37
SMARCE1-216ENST00000580419 BTBD7Q9P203 1132 aa17.39■□□□□ 0.37
SMARCE1-216ENST00000580419 IVNS1ABPQ9Y6Y0 642 aa17.39■□□□□ 0.37
SMARCE1-216ENST00000580419 ALPK3Q96L96 1907 aa17.39■□□□□ 0.37
SMARCE1-216ENST00000580419 DNAH12Q6ZR08 3092 aa17.38■□□□□ 0.37
SMARCE1-216ENST00000580419 GSG1L2A8MUP6 293 aa17.38■□□□□ 0.37
SMARCE1-216ENST00000580419 AKR1B1P15121 316 aa17.38■□□□□ 0.37
SMARCE1-216ENST00000580419 DSG3P32926 999 aa17.38■□□□□ 0.37
SMARCE1-216ENST00000580419 SLC44A5Q8NCS7 719 aa17.38■□□□□ 0.37
SMARCE1-216ENST00000580419 DYNLL2Q96FJ2 89 aa17.38■□□□□ 0.37
SMARCE1-216ENST00000580419 PCDHB15Q9Y5E8 787 aa17.38■□□□□ 0.37
SMARCE1-216ENST00000580419 ZNFX1Q9P2E3 1918 aaKnown RBP17.38■□□□□ 0.37
SMARCE1-216ENST00000580419 MNX1P50219 401 aaPredicted RBP17.37■□□□□ 0.37
SMARCE1-216ENST00000580419 EVX2Q03828 476 aa17.37■□□□□ 0.37
SMARCE1-216ENST00000580419 CACNB2Q08289 660 aaPredicted RBP17.37■□□□□ 0.37
SMARCE1-216ENST00000580419 MFSD14CQ5VZR4 134 aa17.37■□□□□ 0.37
SMARCE1-216ENST00000580419 OLFML2BQ68BL8 750 aa17.37■□□□□ 0.37
SMARCE1-216ENST00000580419 PI4K2BQ8TCG2 481 aa17.37■□□□□ 0.37
SMARCE1-216ENST00000580419 OSBP2Q969R2 916 aa17.37■□□□□ 0.37
SMARCE1-216ENST00000580419 PAWRQ96IZ0 340 aaKnown RBP17.37■□□□□ 0.37
SMARCE1-216ENST00000580419 SPATC1LQ9H0A9 340 aa17.37■□□□□ 0.37
SMARCE1-216ENST00000580419 SLC5A4Q9NY91 659 aa17.37■□□□□ 0.37
SMARCE1-216ENST00000580419 COLQQ9Y215 455 aaPredicted RBP17.37■□□□□ 0.37
SMARCE1-216ENST00000580419 LAMA3Q16787 3333 aa17.36■□□□□ 0.37
SMARCE1-216ENST00000580419 FRMPD3Q5JV73 1810 aa17.36■□□□□ 0.37
SMARCE1-216ENST00000580419 EVI5O60447 810 aa17.36■□□□□ 0.37
SMARCE1-216ENST00000580419 SLC25A27O95847 323 aa17.36■□□□□ 0.37
SMARCE1-216ENST00000580419 COPB2P35606 906 aa17.36■□□□□ 0.37
SMARCE1-216ENST00000580419 FXR1P51114 621 aaKnown RBP eCLIP17.36■□□□□ 0.37
SMARCE1-216ENST00000580419 RRP1P56182 461 aaKnown RBP17.36■□□□□ 0.37
SMARCE1-216ENST00000580419 HDAC1Q13547 482 aaPredicted RBP17.36■□□□□ 0.37
SMARCE1-216ENST00000580419 SLFNL1Q499Z3 407 aa17.36■□□□□ 0.37
SMARCE1-216ENST00000580419 LHX8Q68G74 356 aa17.36■□□□□ 0.37
SMARCE1-216ENST00000580419 MOV10L1Q9BXT6 1211 aaKnown RBP17.36■□□□□ 0.37
SMARCE1-216ENST00000580419 TANGO6Q9C0B7 1094 aa17.36■□□□□ 0.37
SMARCE1-216ENST00000580419 CWC22Q9HCG8 908 aaKnown RBP17.36■□□□□ 0.37
SMARCE1-216ENST00000580419 GOPCQ9HD26 462 aa17.36■□□□□ 0.37
SMARCE1-216ENST00000580419 NYAP2Q9P242 653 aa17.36■□□□□ 0.37
SMARCE1-216ENST00000580419 SZT2Q5T011 3432 aa17.35■□□□□ 0.37
SMARCE1-216ENST00000580419 PATL2C9JE40 543 aaKnown RBP17.35■□□□□ 0.37
SMARCE1-216ENST00000580419 GPAA1O43292 621 aa17.35■□□□□ 0.37
SMARCE1-216ENST00000580419 PEX10O60683 326 aa17.35■□□□□ 0.37
SMARCE1-216ENST00000580419 COL6A1P12109 1028 aa17.35■□□□□ 0.37
SMARCE1-216ENST00000580419 TRIM32Q13049 653 aa17.35■□□□□ 0.37
SMARCE1-216ENST00000580419 NRBP1Q9UHY1 535 aa17.35■□□□□ 0.37
SMARCE1-216ENST00000580419 SALL3Q9BXA9 1300 aa17.35■□□□□ 0.37
SMARCE1-216ENST00000580419 FLOT1O75955 427 aa17.34■□□□□ 0.37
SMARCE1-216ENST00000580419 EEF2P13639 858 aaKnown RBP17.34■□□□□ 0.37
SMARCE1-216ENST00000580419 KIAA1755Q5JYT7 1200 aa17.34■□□□□ 0.37
SMARCE1-216ENST00000580419 MKL1Q969V6 931 aa17.34■□□□□ 0.37
SMARCE1-216ENST00000580419 PLIN4Q96Q06 1357 aa17.34■□□□□ 0.37
SMARCE1-216ENST00000580419 GNL3Q9BVP2 549 aaKnown RBP eCLIP17.34■□□□□ 0.37
SMARCE1-216ENST00000580419 NACAP1Q9BZK3 213 aa17.34■□□□□ 0.37
SMARCE1-216ENST00000580419 STAP2Q9UGK3 403 aa17.34■□□□□ 0.37
SMARCE1-216ENST00000580419 MYH4Q9Y623 1939 aa17.33■□□□□ 0.37
SMARCE1-216ENST00000580419 COL11A1P12107 1806 aaPredicted RBP17.33■□□□□ 0.37
SMARCE1-216ENST00000580419 CYP2D7A0A087X1C5 515 aa17.33■□□□□ 0.36
SMARCE1-216ENST00000580419 CHGBP05060 677 aa17.33■□□□□ 0.36
SMARCE1-216ENST00000580419 MX1P20591 662 aa17.33■□□□□ 0.36
SMARCE1-216ENST00000580419 RASA1P20936 1047 aa17.33■□□□□ 0.36
SMARCE1-216ENST00000580419 BMP8BP34820 402 aa17.33■□□□□ 0.36
SMARCE1-216ENST00000580419 ATP2B2Q01814 1243 aa17.33■□□□□ 0.36
SMARCE1-216ENST00000580419 CCL14Q16627 93 aa17.33■□□□□ 0.36
SMARCE1-216ENST00000580419 PPP4R3BQ5MIZ7 849 aa17.33■□□□□ 0.36
SMARCE1-216ENST00000580419 C11orf49Q9H6J7 331 aa17.33■□□□□ 0.36
Retrieved 100 of 20,778 RNA–protein pairs in 22.2 ms