RNA–Protein interactions for RNA: ENST00000574428.5

ATPAF1-213, Transcript of ATP synthase mitochondrial F1 complex assembly factor 1, humanhuman

TSL 1 (best) BASIC

Gene ATPAF1, Length 1,760 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ATPAF1-213ENST00000574428 DOCK1Q14185 1865 aa28.04■■■□□ 2.08
ATPAF1-213ENST00000574428 CPLX1O14810 134 aa28.04■■■□□ 2.08
ATPAF1-213ENST00000574428 CTCFLQ8NI51 663 aaPredicted RBP28.03■■■□□ 2.08
ATPAF1-213ENST00000574428 MKL1Q969V6 931 aa28.03■■■□□ 2.08
ATPAF1-213ENST00000574428 A0A1W2PRG0 241 aa28.02■■■□□ 2.08
ATPAF1-213ENST00000574428 PPP1R12BO60237 982 aaPredicted RBP28.02■■■□□ 2.08
ATPAF1-213ENST00000574428 FMR1Q06787 632 aaKnown RBP eCLIP28.02■■■□□ 2.08
ATPAF1-213ENST00000574428 SCYL3Q8IZE3 742 aa28.02■■■□□ 2.08
ATPAF1-213ENST00000574428 DDX55Q8NHQ9 600 aaKnown RBP eCLIP28.02■■■□□ 2.08
ATPAF1-213ENST00000574428 ACER1Q8TDN7 264 aa28.02■■■□□ 2.08
ATPAF1-213ENST00000574428 LLPHQ9BRT6 129 aaKnown RBP28.02■■■□□ 2.08
ATPAF1-213ENST00000574428 PTPDC1A2A3K4 754 aa28.01■■■□□ 2.08
ATPAF1-213ENST00000574428 GJB2P29033 226 aa28.01■■■□□ 2.08
ATPAF1-213ENST00000574428 ECE1P42892 770 aa28.01■■■□□ 2.08
ATPAF1-213ENST00000574428 GRM4Q14833 912 aa28.01■■■□□ 2.08
ATPAF1-213ENST00000574428 CMTR1Q8N1G2 835 aaKnown RBP28.01■■■□□ 2.08
ATPAF1-213ENST00000574428 ARHGEF10LQ9HCE6 1279 aa28.01■■■□□ 2.08
ATPAF1-213ENST00000574428 CCDC196A0A1B0GTZ2 297 aa28.01■■■□□ 2.07
ATPAF1-213ENST00000574428 USP17L5A8MUK1 530 aa28.01■■■□□ 2.07
ATPAF1-213ENST00000574428 DDX11Q96FC9 970 aa28.01■■■□□ 2.07
ATPAF1-213ENST00000574428 GINM1Q9NU53 330 aa28.01■■■□□ 2.07
ATPAF1-213ENST00000574428 PAPPA2Q9BXP8 1791 aa28.01■■■□□ 2.07
ATPAF1-213ENST00000574428 RAD21O60216 631 aa28■■■□□ 2.07
ATPAF1-213ENST00000574428 PLEKHA8P1O95397 391 aa28■■■□□ 2.07
ATPAF1-213ENST00000574428 NTRK3Q16288 839 aa28■■■□□ 2.07
ATPAF1-213ENST00000574428 MOB2Q70IA6 237 aa28■■■□□ 2.07
ATPAF1-213ENST00000574428 SMARCC2Q8TAQ2 1214 aa28■■■□□ 2.07
ATPAF1-213ENST00000574428 MAP3K14Q99558 947 aa28■■■□□ 2.07
ATPAF1-213ENST00000574428 PICK1Q9NRD5 415 aa28■■■□□ 2.07
ATPAF1-213ENST00000574428 RBM28Q9NW13 759 aaKnown RBP28■■■□□ 2.07
ATPAF1-213ENST00000574428 OTOFQ9HC10 1997 aa28■■■□□ 2.07
ATPAF1-213ENST00000574428 PDHBP11177 359 aa27.99■■■□□ 2.07
ATPAF1-213ENST00000574428 KIF5BP33176 963 aa27.99■■■□□ 2.07
ATPAF1-213ENST00000574428 TTLL12Q14166 644 aaPredicted RBP27.99■■■□□ 2.07
ATPAF1-213ENST00000574428 PPP2R5BQ15173 497 aa27.99■■■□□ 2.07
ATPAF1-213ENST00000574428 USP17L2Q6R6M4 530 aa27.99■■■□□ 2.07
ATPAF1-213ENST00000574428 STAG2Q8N3U4 1231 aa27.99■■■□□ 2.07
ATPAF1-213ENST00000574428 ZNF408Q9H9D4 720 aa27.99■■■□□ 2.07
ATPAF1-213ENST00000574428 MAD2L2Q9UI95 211 aa27.99■■■□□ 2.07
ATPAF1-213ENST00000574428 GOLGA8HP0CJ92 632 aa27.99■■■□□ 2.07
ATPAF1-213ENST00000574428 DDIT3P35638 169 aa27.99■■■□□ 2.07
ATPAF1-213ENST00000574428 CPLX2Q6PUV4 134 aaKnown RBP27.99■■■□□ 2.07
ATPAF1-213ENST00000574428 CCDC82Q8N4S0 544 aa27.99■■■□□ 2.07
ATPAF1-213ENST00000574428 PHKBQ93100 1093 aa27.99■■■□□ 2.07
ATPAF1-213ENST00000574428 CWC22Q9HCG8 908 aaKnown RBP27.99■■■□□ 2.07
ATPAF1-213ENST00000574428 CDKL5O76039 1030 aa27.98■■■□□ 2.07
ATPAF1-213ENST00000574428 IREB2P48200 963 aaKnown RBP27.98■■■□□ 2.07
ATPAF1-213ENST00000574428 MAP3K9P80192 1104 aa27.98■■■□□ 2.07
ATPAF1-213ENST00000574428 PPP1R3FQ6ZSY5 799 aaPredicted RBP27.98■■■□□ 2.07
ATPAF1-213ENST00000574428 TMTC3Q6ZXV5 915 aa27.98■■■□□ 2.07
ATPAF1-213ENST00000574428 GPBP1L1Q9HC44 474 aaPredicted RBP27.98■■■□□ 2.07
ATPAF1-213ENST00000574428 ZBTB4Q9P1Z0 1013 aaPredicted RBP27.98■■■□□ 2.07
ATPAF1-213ENST00000574428 TMX2Q9Y320 296 aa27.98■■■□□ 2.07
ATPAF1-213ENST00000574428 FRMPD2Q68DX3 1309 aaPredicted RBP27.97■■■□□ 2.07
ATPAF1-213ENST00000574428 PARP1P09874 1014 aaKnown RBP27.97■■■□□ 2.07
ATPAF1-213ENST00000574428 VGLL4Q14135 290 aa27.97■■■□□ 2.07
ATPAF1-213ENST00000574428 NOL9Q5SY16 702 aaKnown RBP27.97■■■□□ 2.07
ATPAF1-213ENST00000574428 PALM3A6NDB9 673 aaPredicted RBP27.96■■■□□ 2.07
ATPAF1-213ENST00000574428 SNHG28P0DPA3 235 aa27.96■■■□□ 2.07
ATPAF1-213ENST00000574428 IFNAR1P17181 557 aa27.96■■■□□ 2.07
ATPAF1-213ENST00000574428 PTPRAP18433 802 aa27.96■■■□□ 2.07
ATPAF1-213ENST00000574428 SLFN13Q68D06 897 aa27.96■■■□□ 2.07
ATPAF1-213ENST00000574428 GMCL1P1Q8NEA9 526 aa27.96■■■□□ 2.07
ATPAF1-213ENST00000574428 F5H6K3 240 aa27.96■■■□□ 2.07
ATPAF1-213ENST00000574428 KLRC3Q07444 240 aa27.96■■■□□ 2.07
ATPAF1-213ENST00000574428 ZYXQ15942 572 aaKnown RBP27.96■■■□□ 2.07
ATPAF1-213ENST00000574428 CHADLQ6NUI6 762 aa27.96■■■□□ 2.07
ATPAF1-213ENST00000574428 SRBD1Q8N5C6 995 aaKnown RBP27.96■■■□□ 2.07
ATPAF1-213ENST00000574428 SNCAIPQ9Y6H5 919 aa27.96■■■□□ 2.07
ATPAF1-213ENST00000574428 NDUFB10O96000 172 aa27.95■■■□□ 2.06
ATPAF1-213ENST00000574428 HMGN5P82970 282 aaKnown RBP27.95■■■□□ 2.06
ATPAF1-213ENST00000574428 FUT2Q10981 343 aa27.95■■■□□ 2.06
ATPAF1-213ENST00000574428 NBPF11Q86T75 865 aa27.95■■■□□ 2.06
ATPAF1-213ENST00000574428 FEZ1Q99689 392 aa27.95■■■□□ 2.06
ATPAF1-213ENST00000574428 SLC26A6Q9BXS9 759 aa27.95■■■□□ 2.06
ATPAF1-213ENST00000574428 SYNPO2Q9UMS6 1093 aa27.95■■■□□ 2.06
ATPAF1-213ENST00000574428 FDPSP14324 419 aaKnown RBP27.94■■■□□ 2.06
ATPAF1-213ENST00000574428 CCDC96Q2M329 555 aa27.94■■■□□ 2.06
ATPAF1-213ENST00000574428 SPICE1Q8N0Z3 855 aa27.94■■■□□ 2.06
ATPAF1-213ENST00000574428 SH2D4AQ9H788 454 aa27.94■■■□□ 2.06
ATPAF1-213ENST00000574428 GPCPD1Q9NPB8 672 aa27.94■■■□□ 2.06
ATPAF1-213ENST00000574428 ORC3Q9UBD5 711 aaPredicted RBP27.94■■■□□ 2.06
ATPAF1-213ENST00000574428 CSADQ9Y600 493 aa27.94■■■□□ 2.06
ATPAF1-213ENST00000574428 ASPRV1Q53RT3 343 aa27.94■■■□□ 2.06
ATPAF1-213ENST00000574428 KIAA1755Q5JYT7 1200 aa27.94■■■□□ 2.06
ATPAF1-213ENST00000574428 CPVLQ9H3G5 476 aa27.94■■■□□ 2.06
ATPAF1-213ENST00000574428 GOPCQ9HD26 462 aa27.94■■■□□ 2.06
ATPAF1-213ENST00000574428 ISY1Q9ULR0 285 aaKnown RBP27.94■■■□□ 2.06
ATPAF1-213ENST00000574428 ZHX2Q9Y6X8 837 aa27.94■■■□□ 2.06
ATPAF1-213ENST00000574428 KLRF2D3W0D1 207 aa27.93■■■□□ 2.06
ATPAF1-213ENST00000574428 UBE2Q2LH0YL09 131 aa27.93■■■□□ 2.06
ATPAF1-213ENST00000574428 SLC1A4P43007 532 aa27.93■■■□□ 2.06
ATPAF1-213ENST00000574428 SSRP1Q08945 709 aaKnown RBP27.93■■■□□ 2.06
ATPAF1-213ENST00000574428 ZNF543Q08ER8 600 aa27.93■■■□□ 2.06
ATPAF1-213ENST00000574428 MAP3K11Q16584 847 aa27.93■■■□□ 2.06
ATPAF1-213ENST00000574428 KCTD1Q719H9 257 aa27.93■■■□□ 2.06
ATPAF1-213ENST00000574428 ARMC9Q7Z3E5 817 aa27.93■■■□□ 2.06
ATPAF1-213ENST00000574428 FAM184AQ8NB25 1140 aa27.93■■■□□ 2.06
ATPAF1-213ENST00000574428 DCAF4Q8WV16 495 aa27.93■■■□□ 2.06
ATPAF1-213ENST00000574428 NUP88Q99567 741 aaPredicted RBP27.93■■■□□ 2.06
Retrieved 100 of 20,778 RNA–protein pairs in 26 ms