RNA–Protein interactions for RNA: ENST00000572290.1

NUP88-204, Transcript of nucleoporin 88, humanhuman

TSL 5

Gene NUP88, Length 615 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-204ENST00000572290 RABGAP1Q9Y3P9 1069 aa23.99■■□□□ 1.43
NUP88-204ENST00000572290 BAZ2AQ9UIF9 1905 aaKnown RBP23.99■■□□□ 1.43
NUP88-204ENST00000572290 IRF5Q13568 498 aa23.98■■□□□ 1.43
NUP88-204ENST00000572290 Q3C1V9 767 aa23.98■■□□□ 1.43
NUP88-204ENST00000572290 POTEEQ6S8J3 1075 aa23.98■■□□□ 1.43
NUP88-204ENST00000572290 TMEM106CQ9BVX2 250 aa23.98■■□□□ 1.43
NUP88-204ENST00000572290 TANGO6Q9C0B7 1094 aa23.98■■□□□ 1.43
NUP88-204ENST00000572290 HTTP42858 3142 aa23.98■■□□□ 1.43
NUP88-204ENST00000572290 COG2Q14746 738 aa23.97■■□□□ 1.43
NUP88-204ENST00000572290 ALX1Q15699 326 aa23.97■■□□□ 1.43
NUP88-204ENST00000572290 LBX2Q6XYB7 198 aa23.97■■□□□ 1.43
NUP88-204ENST00000572290 ZNF589Q86UQ0 364 aaPredicted RBP23.97■■□□□ 1.43
NUP88-204ENST00000572290 SPICE1Q8N0Z3 855 aa23.97■■□□□ 1.43
NUP88-204ENST00000572290 SLAIN1Q8ND83 568 aa23.97■■□□□ 1.43
NUP88-204ENST00000572290 CCDC171Q6TFL3 1326 aa23.96■■□□□ 1.43
NUP88-204ENST00000572290 POTEFA5A3E0 1075 aa23.96■■□□□ 1.43
NUP88-204ENST00000572290 SPDYE16A6NNV3 312 aaPredicted RBP23.96■■□□□ 1.43
NUP88-204ENST00000572290 WDR46O15213 610 aaKnown RBP23.96■■□□□ 1.43
NUP88-204ENST00000572290 ADCY3O60266 1144 aa23.96■■□□□ 1.43
NUP88-204ENST00000572290 CNMDO75829 334 aa23.96■■□□□ 1.43
NUP88-204ENST00000572290 MYCP01106 439 aaPredicted RBP23.96■■□□□ 1.43
NUP88-204ENST00000572290 CCAR1Q8IX12 1150 aaKnown RBP23.96■■□□□ 1.43
NUP88-204ENST00000572290 GOPCQ9HD26 462 aa23.96■■□□□ 1.43
NUP88-204ENST00000572290 HOXC10Q9NYD6 342 aa23.96■■□□□ 1.43
NUP88-204ENST00000572290 NYAP2Q9P242 653 aa23.96■■□□□ 1.43
NUP88-204ENST00000572290 BIN2Q9UBW5 565 aaPredicted RBP23.96■■□□□ 1.43
NUP88-204ENST00000572290 IGKV6D-41A0A0C4DH26 115 aa23.95■■□□□ 1.42
NUP88-204ENST00000572290 HIP1O00291 1037 aa23.95■■□□□ 1.42
NUP88-204ENST00000572290 MAPK4P31152 587 aa23.95■■□□□ 1.42
NUP88-204ENST00000572290 MFAP1P55081 439 aaKnown RBP23.95■■□□□ 1.42
NUP88-204ENST00000572290 PXYLP1Q8TE99 480 aa23.95■■□□□ 1.42
NUP88-204ENST00000572290 DIAPH3Q9NSV4 1193 aa23.95■■□□□ 1.42
NUP88-204ENST00000572290 TSPY3P0CV98 308 aa23.94■■□□□ 1.42
NUP88-204ENST00000572290 TSPY8P0CW00 308 aa23.94■■□□□ 1.42
NUP88-204ENST00000572290 HSPD1P10809 573 aaKnown RBP23.94■■□□□ 1.42
NUP88-204ENST00000572290 UBXN2AP68543 259 aa23.94■■□□□ 1.42
NUP88-204ENST00000572290 CCNA1P78396 465 aa23.94■■□□□ 1.42
NUP88-204ENST00000572290 CTDSPL2Q05D32 466 aa23.94■■□□□ 1.42
NUP88-204ENST00000572290 NEDD1Q8NHV4 660 aa23.94■■□□□ 1.42
NUP88-204ENST00000572290 PORCNQ9H237 461 aa23.94■■□□□ 1.42
NUP88-204ENST00000572290 BTBD7Q9P203 1132 aa23.94■■□□□ 1.42
NUP88-204ENST00000572290 ANAPC4Q9UJX5 808 aa23.94■■□□□ 1.42
NUP88-204ENST00000572290 GJD2Q9UKL4 321 aa23.94■■□□□ 1.42
NUP88-204ENST00000572290 RAD21O60216 631 aa23.93■■□□□ 1.42
NUP88-204ENST00000572290 FLOT1O75955 427 aa23.93■■□□□ 1.42
NUP88-204ENST00000572290 FGAP02671 866 aa23.93■■□□□ 1.42
NUP88-204ENST00000572290 TFAP4Q01664 338 aa23.93■■□□□ 1.42
NUP88-204ENST00000572290 FAM47AQ5JRC9 791 aa23.93■■□□□ 1.42
NUP88-204ENST00000572290 TTC22Q5TAA0 569 aa23.93■■□□□ 1.42
NUP88-204ENST00000572290 CWC27Q6UX04 472 aaKnown RBP23.93■■□□□ 1.42
NUP88-204ENST00000572290 CLIP2Q9UDT6 1046 aa23.93■■□□□ 1.42
NUP88-204ENST00000572290 DDX52Q9Y2R4 599 aaKnown RBP eCLIP23.93■■□□□ 1.42
NUP88-204ENST00000572290 ELNP15502 786 aa23.92■■□□□ 1.42
NUP88-204ENST00000572290 DSG3P32926 999 aa23.92■■□□□ 1.42
NUP88-204ENST00000572290 MTFR1Q15390 333 aa23.92■■□□□ 1.42
NUP88-204ENST00000572290 PLEKHH3Q7Z736 793 aa23.92■■□□□ 1.42
NUP88-204ENST00000572290 CEP95Q96GE4 821 aa23.92■■□□□ 1.42
NUP88-204ENST00000572290 CWC22Q9HCG8 908 aaKnown RBP23.92■■□□□ 1.42
NUP88-204ENST00000572290 MTMR4Q9NYA4 1195 aa23.92■■□□□ 1.42
NUP88-204ENST00000572290 PLIN4Q96Q06 1357 aa23.91■■□□□ 1.42
NUP88-204ENST00000572290 GSPT1P15170 499 aaKnown RBP23.91■■□□□ 1.42
NUP88-204ENST00000572290 GPR142Q7Z601 462 aa23.91■■□□□ 1.42
NUP88-204ENST00000572290 SOCS4Q8WXH5 440 aa23.91■■□□□ 1.42
NUP88-204ENST00000572290 NUDT12Q9BQG2 462 aa23.91■■□□□ 1.42
NUP88-204ENST00000572290 ZMYM6O95789 1325 aa23.9■■□□□ 1.42
NUP88-204ENST00000572290 F5H6K3 240 aa23.9■■□□□ 1.42
NUP88-204ENST00000572290 TTLL1O95922 423 aa23.9■■□□□ 1.42
NUP88-204ENST00000572290 EN2P19622 333 aaPredicted RBP23.9■■□□□ 1.42
NUP88-204ENST00000572290 KLRC3Q07444 240 aa23.9■■□□□ 1.42
NUP88-204ENST00000572290 MB21D1Q8N884 522 aa23.9■■□□□ 1.42
NUP88-204ENST00000572290 MKL1Q969V6 931 aa23.9■■□□□ 1.42
NUP88-204ENST00000572290 ATG4CQ96DT6 458 aa23.9■■□□□ 1.42
NUP88-204ENST00000572290 INCENPQ9NQS7 918 aa23.9■■□□□ 1.42
NUP88-204ENST00000572290 TSPY2A6NKD2 308 aa23.89■■□□□ 1.41
NUP88-204ENST00000572290 INHAP05111 366 aa23.89■■□□□ 1.41
NUP88-204ENST00000572290 CCL5P13501 91 aa23.89■■□□□ 1.41
NUP88-204ENST00000572290 CYP2B6P20813 491 aa23.89■■□□□ 1.41
NUP88-204ENST00000572290 FAM83BQ5T0W9 1011 aa23.89■■□□□ 1.41
NUP88-204ENST00000572290 WDR78Q5VTH9 848 aa23.89■■□□□ 1.41
NUP88-204ENST00000572290 SAMD1Q6SPF0 538 aaPredicted RBP23.89■■□□□ 1.41
NUP88-204ENST00000572290 SYNPO2Q9UMS6 1093 aa23.89■■□□□ 1.41
NUP88-204ENST00000572290 TACC3Q9Y6A5 838 aa23.89■■□□□ 1.41
NUP88-204ENST00000572290 NDUFB10O96000 172 aa23.88■■□□□ 1.41
NUP88-204ENST00000572290 PPP4R3BQ5MIZ7 849 aa23.88■■□□□ 1.41
NUP88-204ENST00000572290 FBXO28Q9NVF7 368 aa23.88■■□□□ 1.41
NUP88-204ENST00000572290 ORC4O43929 436 aa23.87■■□□□ 1.41
NUP88-204ENST00000572290 RANBP6O60518 1105 aaKnown RBP23.87■■□□□ 1.41
NUP88-204ENST00000572290 FGRP09769 529 aa23.87■■□□□ 1.41
NUP88-204ENST00000572290 MORN1Q5T089 497 aa23.87■■□□□ 1.41
NUP88-204ENST00000572290 NUP88Q99567 741 aaPredicted RBP23.87■■□□□ 1.41
NUP88-204ENST00000572290 MOV10L1Q9BXT6 1211 aaKnown RBP23.87■■□□□ 1.41
NUP88-204ENST00000572290 SPATC1LQ9H0A9 340 aa23.87■■□□□ 1.41
NUP88-204ENST00000572290 RNF208Q9H0X6 261 aa23.87■■□□□ 1.41
NUP88-204ENST00000572290 TOMM22Q9NS69 142 aa23.87■■□□□ 1.41
NUP88-204ENST00000572290 HMGCRP04035 888 aa23.86■■□□□ 1.41
NUP88-204ENST00000572290 XRCC5P13010 732 aaKnown RBP23.86■■□□□ 1.41
NUP88-204ENST00000572290 RGS2P41220 211 aa23.86■■□□□ 1.41
NUP88-204ENST00000572290 HAND2P61296 217 aa23.86■■□□□ 1.41
NUP88-204ENST00000572290 LRRC47Q8N1G4 583 aaKnown RBP23.86■■□□□ 1.41
NUP88-204ENST00000572290 USP6NLQ92738 828 aa23.86■■□□□ 1.41
Retrieved 100 of 20,778 RNA–protein pairs in 15.6 ms