RNA–Protein interactions for RNA: ENST00000568784.6

VPS35-210, Transcript of VPS35, retromer complex component, humanhuman

TSL 1 (best)

Gene VPS35, Length 4,017 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-210ENST00000568784 MYO1BO43795 1136 aa16.34■□□□□ 0.21
VPS35-210ENST00000568784 ZNF18P17022 549 aa16.34■□□□□ 0.21
VPS35-210ENST00000568784 PIP4K2BP78356 416 aa16.34■□□□□ 0.21
VPS35-210ENST00000568784 CYP26C1Q6V0L0 522 aa16.34■□□□□ 0.21
VPS35-210ENST00000568784 TMTC1Q8IUR5 882 aa16.34■□□□□ 0.21
VPS35-210ENST00000568784 DEF6Q9H4E7 631 aa16.34■□□□□ 0.21
VPS35-210ENST00000568784 MYO6Q9UM54 1294 aa16.34■□□□□ 0.21
VPS35-210ENST00000568784 A0A1B0GTH6 734 aa16.34■□□□□ 0.21
VPS35-210ENST00000568784 TSPY2A6NKD2 308 aa16.34■□□□□ 0.21
VPS35-210ENST00000568784 UBA7P41226 1012 aa16.34■□□□□ 0.21
VPS35-210ENST00000568784 CASP8Q14790 479 aa16.34■□□□□ 0.21
VPS35-210ENST00000568784 CCDC178Q5BJE1 867 aa16.34■□□□□ 0.21
VPS35-210ENST00000568784 MED15Q96RN5 788 aa16.34■□□□□ 0.21
VPS35-210ENST00000568784 OVOS2A0A0G2JMS6 1433 aa16.33■□□□□ 0.21
VPS35-210ENST00000568784 NMT2O60551 498 aa16.33■□□□□ 0.21
VPS35-210ENST00000568784 GYPCP04921 128 aa16.33■□□□□ 0.21
VPS35-210ENST00000568784 MTIF2P46199 727 aaKnown RBP16.33■□□□□ 0.21
VPS35-210ENST00000568784 COPB1P53618 953 aaKnown RBP16.33■□□□□ 0.21
VPS35-210ENST00000568784 TBX2Q13207 712 aaPredicted RBP16.33■□□□□ 0.21
VPS35-210ENST00000568784 CERS3Q8IU89 383 aa16.33■□□□□ 0.21
VPS35-210ENST00000568784 PANX2Q96RD6 677 aa16.33■□□□□ 0.21
VPS35-210ENST00000568784 CRYBG1Q9Y4K1 1723 aa16.33■□□□□ 0.2
VPS35-210ENST00000568784 MDM2Q00987 491 aaPredicted RBP16.33■□□□□ 0.2
VPS35-210ENST00000568784 RSRC2Q7L4I2 434 aaKnown RBP16.33■□□□□ 0.2
VPS35-210ENST00000568784 FBXL16Q8N461 479 aa16.33■□□□□ 0.2
VPS35-210ENST00000568784 GPKOWQ92917 476 aaPredicted RBP eCLIP16.33■□□□□ 0.2
VPS35-210ENST00000568784 LCMT1Q9UIC8 334 aa16.33■□□□□ 0.2
VPS35-210ENST00000568784 CHD2O14647 1828 aaKnown RBP16.33■□□□□ 0.2
VPS35-210ENST00000568784 STIM1Q13586 685 aa16.33■□□□□ 0.2
VPS35-210ENST00000568784 ADD3Q9UEY8 706 aaKnown RBP16.33■□□□□ 0.2
VPS35-210ENST00000568784 MYO1CO00159 1063 aa16.32■□□□□ 0.2
VPS35-210ENST00000568784 CCDC70Q6NSX1 233 aa16.32■□□□□ 0.2
VPS35-210ENST00000568784 RIN2Q8WYP3 895 aaPredicted RBP16.32■□□□□ 0.2
VPS35-210ENST00000568784 ACSBG1Q96GR2 724 aa16.32■□□□□ 0.2
VPS35-210ENST00000568784 CCDC194A0A1B0GVG4 234 aa16.32■□□□□ 0.2
VPS35-210ENST00000568784 ATP8B1O43520 1251 aa16.32■□□□□ 0.2
VPS35-210ENST00000568784 FAM204AQ9H8W3 233 aa16.32■□□□□ 0.2
VPS35-210ENST00000568784 FBXO3Q9UK99 471 aa16.32■□□□□ 0.2
VPS35-210ENST00000568784 EPN1Q9Y6I3 576 aaPredicted RBP16.32■□□□□ 0.2
VPS35-210ENST00000568784 USP17L12C9JPN9 530 aa16.32■□□□□ 0.2
VPS35-210ENST00000568784 USP17L21D6R901 530 aa16.32■□□□□ 0.2
VPS35-210ENST00000568784 WNT7AO00755 349 aa16.32■□□□□ 0.2
VPS35-210ENST00000568784 ACTN2P35609 894 aa16.32■□□□□ 0.2
VPS35-210ENST00000568784 CYP27A1Q02318 531 aa16.32■□□□□ 0.2
VPS35-210ENST00000568784 CCDC24Q8N4L8 307 aa16.32■□□□□ 0.2
VPS35-210ENST00000568784 WDR19Q8NEZ3 1342 aa16.31■□□□□ 0.2
VPS35-210ENST00000568784 CADPS2Q86UW7 1296 aa16.31■□□□□ 0.2
VPS35-210ENST00000568784 RUFY1Q96T51 708 aa16.31■□□□□ 0.2
VPS35-210ENST00000568784 RRP15Q9Y3B9 282 aaKnown RBP16.31■□□□□ 0.2
VPS35-210ENST00000568784 TACC3Q9Y6A5 838 aa16.31■□□□□ 0.2
VPS35-210ENST00000568784 CSF1RP07333 972 aa16.31■□□□□ 0.2
VPS35-210ENST00000568784 CCDC96Q2M329 555 aa16.31■□□□□ 0.2
VPS35-210ENST00000568784 NAA15Q9BXJ9 866 aaKnown RBP16.31■□□□□ 0.2
VPS35-210ENST00000568784 ANKZF1Q9H8Y5 726 aa16.31■□□□□ 0.2
VPS35-210ENST00000568784 VAT1LQ9HCJ6 419 aa16.31■□□□□ 0.2
VPS35-210ENST00000568784 TMEM94Q12767 1356 aa16.31■□□□□ 0.2
VPS35-210ENST00000568784 TANGO6Q9C0B7 1094 aa16.31■□□□□ 0.2
VPS35-210ENST00000568784 FAM53CQ9NYF3 392 aa16.31■□□□□ 0.2
VPS35-210ENST00000568784 NIP7Q9Y221 180 aaKnown RBP eCLIP16.31■□□□□ 0.2
VPS35-210ENST00000568784 PP2D1A8MPX8 630 aa16.3■□□□□ 0.2
VPS35-210ENST00000568784 SPAG1Q07617 926 aa16.3■□□□□ 0.2
VPS35-210ENST00000568784 TTC19Q6DKK2 380 aaPredicted RBP16.3■□□□□ 0.2
VPS35-210ENST00000568784 GSDMAQ96QA5 445 aa16.3■□□□□ 0.2
VPS35-210ENST00000568784 ABHD10Q9NUJ1 306 aa16.3■□□□□ 0.2
VPS35-210ENST00000568784 ERVK-24P63145 666 aa16.3■□□□□ 0.2
VPS35-210ENST00000568784 DPYDQ12882 1025 aa16.3■□□□□ 0.2
VPS35-210ENST00000568784 CCDC181Q5TID7 509 aa16.3■□□□□ 0.2
VPS35-210ENST00000568784 EXOC4Q96A65 974 aa16.3■□□□□ 0.2
VPS35-210ENST00000568784 ZSCAN10Q96SZ4 725 aaPredicted RBP16.3■□□□□ 0.2
VPS35-210ENST00000568784 FEZ2Q9UHY8 353 aaPredicted RBP16.3■□□□□ 0.2
VPS35-210ENST00000568784 IDEP14735 1019 aa16.3■□□□□ 0.2
VPS35-210ENST00000568784 GNAT2P19087 354 aa16.3■□□□□ 0.2
VPS35-210ENST00000568784 FOXR1Q6PIV2 292 aa16.3■□□□□ 0.2
VPS35-210ENST00000568784 GOLGA5Q8TBA6 731 aa16.3■□□□□ 0.2
VPS35-210ENST00000568784 AATFQ9NY61 560 aaKnown RBP eCLIP16.3■□□□□ 0.2
VPS35-210ENST00000568784 HSPA2P54652 639 aa16.29■□□□□ 0.2
VPS35-210ENST00000568784 ENAHQ8N8S7 591 aaPredicted RBP16.29■□□□□ 0.2
VPS35-210ENST00000568784 STX8Q9UNK0 236 aa16.29■□□□□ 0.2
VPS35-210ENST00000568784 RNF225M0QZC1 329 aaPredicted RBP16.29■□□□□ 0.2
VPS35-210ENST00000568784 HEATR3Q7Z4Q2 680 aa16.29■□□□□ 0.2
VPS35-210ENST00000568784 ANKRD13CQ8N6S4 541 aa16.29■□□□□ 0.2
VPS35-210ENST00000568784 CCDC47Q96A33 483 aaKnown RBP16.29■□□□□ 0.2
VPS35-210ENST00000568784 FERMT2Q96AC1 680 aa16.29■□□□□ 0.2
VPS35-210ENST00000568784 C1orf167Q5SNV9 1468 aa16.29■□□□□ 0.2
VPS35-210ENST00000568784 WTIPA6NIX2 430 aaPredicted RBP16.29■□□□□ 0.2
VPS35-210ENST00000568784 TBC1D8BQ0IIM8 1120 aa16.29■□□□□ 0.2
VPS35-210ENST00000568784 BEND6Q5SZJ8 279 aaPredicted RBP16.29■□□□□ 0.2
VPS35-210ENST00000568784 UIMC1Q96RL1 719 aa16.29■□□□□ 0.2
VPS35-210ENST00000568784 CENPHQ9H3R5 247 aa16.29■□□□□ 0.2
VPS35-210ENST00000568784 RTL9Q8NET4 1388 aa16.29■□□□□ 0.2
VPS35-210ENST00000568784 WDR17Q8IZU2 1322 aa16.29■□□□□ 0.2
VPS35-210ENST00000568784 ZPR1O75312 459 aa16.29■□□□□ 0.2
VPS35-210ENST00000568784 OR8K1Q8NGG5 319 aa16.29■□□□□ 0.2
VPS35-210ENST00000568784 RNF26Q9BY78 433 aaPredicted RBP16.29■□□□□ 0.2
VPS35-210ENST00000568784 TSPYL1Q9H0U9 437 aa16.29■□□□□ 0.2
VPS35-210ENST00000568784 STK36Q9NRP7 1315 aa16.28■□□□□ 0.2
VPS35-210ENST00000568784 TTC26A0AVF1 554 aa16.28■□□□□ 0.2
VPS35-210ENST00000568784 B4DLN1 442 aa16.28■□□□□ 0.2
VPS35-210ENST00000568784 RAD21O60216 631 aa16.28■□□□□ 0.2
VPS35-210ENST00000568784 RPN1P04843 607 aaKnown RBP16.28■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 13.2 ms