RNA–Protein interactions for RNA: ENST00000568422.6

CLN3-231, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,168 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-231ENST00000568422 A0A1W2PRG0 241 aa20.31■□□□□ 0.84
CLN3-231ENST00000568422 MBD4O95243 580 aa20.31■□□□□ 0.84
CLN3-231ENST00000568422 GRB14Q14449 540 aa20.31■□□□□ 0.84
CLN3-231ENST00000568422 WDR78Q5VTH9 848 aa20.31■□□□□ 0.84
CLN3-231ENST00000568422 ZSCAN25Q6NSZ9 544 aa20.31■□□□□ 0.84
CLN3-231ENST00000568422 ARHGEF10LQ9HCE6 1279 aa20.31■□□□□ 0.84
CLN3-231ENST00000568422 A0A0G2JMZ2 1700 aa20.3■□□□□ 0.84
CLN3-231ENST00000568422 ZNF236Q9UL36 1845 aa20.3■□□□□ 0.84
CLN3-231ENST00000568422 STRNO43815 780 aa20.3■□□□□ 0.84
CLN3-231ENST00000568422 LHX8Q68G74 356 aa20.3■□□□□ 0.84
CLN3-231ENST00000568422 C7orf61Q8IZ16 206 aa20.3■□□□□ 0.84
CLN3-231ENST00000568422 MB21D1Q8N884 522 aa20.3■□□□□ 0.84
CLN3-231ENST00000568422 TANGO6Q9C0B7 1094 aa20.3■□□□□ 0.84
CLN3-231ENST00000568422 CYP2D6P10635 497 aa20.29■□□□□ 0.84
CLN3-231ENST00000568422 CCND3P30281 292 aaPredicted RBP20.29■□□□□ 0.84
CLN3-231ENST00000568422 BMP8BP34820 402 aa20.29■□□□□ 0.84
CLN3-231ENST00000568422 ATP2B2Q01814 1243 aa20.29■□□□□ 0.84
CLN3-231ENST00000568422 EVX2Q03828 476 aa20.29■□□□□ 0.84
CLN3-231ENST00000568422 C12orf60Q5U649 245 aa20.29■□□□□ 0.84
CLN3-231ENST00000568422 SLC44A5Q8NCS7 719 aa20.29■□□□□ 0.84
CLN3-231ENST00000568422 STAP2Q9UGK3 403 aa20.29■□□□□ 0.84
CLN3-231ENST00000568422 TMX2Q9Y320 296 aa20.29■□□□□ 0.84
CLN3-231ENST00000568422 PARP14Q460N5 1801 aa20.28■□□□□ 0.84
CLN3-231ENST00000568422 PRKAB2O43741 272 aa20.28■□□□□ 0.84
CLN3-231ENST00000568422 MSCO60682 206 aa20.28■□□□□ 0.84
CLN3-231ENST00000568422 COL6A1P12109 1028 aa20.28■□□□□ 0.84
CLN3-231ENST00000568422 SHCBP1Q8NEM2 672 aa20.28■□□□□ 0.84
CLN3-231ENST00000568422 DYNLL2Q96FJ2 89 aa20.28■□□□□ 0.84
CLN3-231ENST00000568422 USP17L12C9JPN9 530 aa20.27■□□□□ 0.84
CLN3-231ENST00000568422 USP17L21D6R901 530 aa20.27■□□□□ 0.84
CLN3-231ENST00000568422 ICA1Q05084 483 aa20.27■□□□□ 0.84
CLN3-231ENST00000568422 C16orf86Q6ZW13 317 aa20.27■□□□□ 0.84
CLN3-231ENST00000568422 GDF15Q99988 308 aa20.27■□□□□ 0.84
CLN3-231ENST00000568422 SPATC1LQ9H0A9 340 aa20.27■□□□□ 0.84
CLN3-231ENST00000568422 PFASO15067 1338 aa20.27■□□□□ 0.83
CLN3-231ENST00000568422 AKR1B1P15121 316 aa20.26■□□□□ 0.83
CLN3-231ENST00000568422 CDK8P49336 464 aa20.26■□□□□ 0.83
CLN3-231ENST00000568422 SLFNL1Q499Z3 407 aa20.26■□□□□ 0.83
CLN3-231ENST00000568422 DPP9Q86TI2 863 aa20.26■□□□□ 0.83
CLN3-231ENST00000568422 SIAH1Q8IUQ4 282 aa20.26■□□□□ 0.83
CLN3-231ENST00000568422 MOV10L1Q9BXT6 1211 aaKnown RBP20.26■□□□□ 0.83
CLN3-231ENST00000568422 MROH8Q9H579 483 aa20.26■□□□□ 0.83
CLN3-231ENST00000568422 VCPKMTQ9H867 229 aa20.26■□□□□ 0.83
CLN3-231ENST00000568422 ECHDC1Q9NTX5 307 aa20.26■□□□□ 0.83
CLN3-231ENST00000568422 FLRT1Q9NZU1 646 aa20.26■□□□□ 0.83
CLN3-231ENST00000568422 SLC4A4Q9Y6R1 1079 aa20.26■□□□□ 0.83
CLN3-231ENST00000568422 WDR46O15213 610 aaKnown RBP20.25■□□□□ 0.83
CLN3-231ENST00000568422 FLOT1O75955 427 aa20.25■□□□□ 0.83
CLN3-231ENST00000568422 DSG3P32926 999 aa20.25■□□□□ 0.83
CLN3-231ENST00000568422 C20orf194Q5TEA3 1177 aa20.25■□□□□ 0.83
CLN3-231ENST00000568422 OLFML2BQ68BL8 750 aa20.25■□□□□ 0.83
CLN3-231ENST00000568422 NPLOC4Q8TAT6 608 aa20.25■□□□□ 0.83
CLN3-231ENST00000568422 KANSL2Q9H9L4 492 aa20.25■□□□□ 0.83
CLN3-231ENST00000568422 SLC5A4Q9NY91 659 aa20.25■□□□□ 0.83
CLN3-231ENST00000568422 DDX20Q9UHI6 824 aaKnown RBP20.25■□□□□ 0.83
CLN3-231ENST00000568422 ZMYND8Q9ULU4 1186 aaPredicted RBP20.25■□□□□ 0.83
CLN3-231ENST00000568422 ZNFX1Q9P2E3 1918 aaKnown RBP20.24■□□□□ 0.83
CLN3-231ENST00000568422 IGHA2P01877 340 aa20.24■□□□□ 0.83
CLN3-231ENST00000568422 ERCC3P19447 782 aa20.24■□□□□ 0.83
CLN3-231ENST00000568422 KIAA1755Q5JYT7 1200 aa20.24■□□□□ 0.83
CLN3-231ENST00000568422 ABRAQ8N0Z2 381 aa20.24■□□□□ 0.83
CLN3-231ENST00000568422 GPATCH3Q96I76 525 aa20.24■□□□□ 0.83
CLN3-231ENST00000568422 PUS7LQ9H0K6 701 aaKnown RBP20.24■□□□□ 0.83
CLN3-231ENST00000568422 ARPP21Q9UBL0 812 aaPredicted RBP20.24■□□□□ 0.83
CLN3-231ENST00000568422 SMARCA5O60264 1052 aaPredicted RBP20.23■□□□□ 0.83
CLN3-231ENST00000568422 ADORA2AP29274 412 aa20.23■□□□□ 0.83
CLN3-231ENST00000568422 CNGA1P29973 690 aa20.23■□□□□ 0.83
CLN3-231ENST00000568422 GIMAP6Q6P9H5 292 aa20.23■□□□□ 0.83
CLN3-231ENST00000568422 CTR9Q6PD62 1173 aa20.23■□□□□ 0.83
CLN3-231ENST00000568422 DCTPP1Q9H773 170 aa20.23■□□□□ 0.83
CLN3-231ENST00000568422 DNAH12Q6ZR08 3092 aa20.23■□□□□ 0.83
CLN3-231ENST00000568422 COL11A1P12107 1806 aaPredicted RBP20.23■□□□□ 0.83
CLN3-231ENST00000568422 LAMA3Q16787 3333 aa20.22■□□□□ 0.83
CLN3-231ENST00000568422 CYP2D7A0A087X1C5 515 aa20.22■□□□□ 0.83
CLN3-231ENST00000568422 SLC25A27O95847 323 aa20.22■□□□□ 0.83
CLN3-231ENST00000568422 CHGBP05060 677 aa20.22■□□□□ 0.83
CLN3-231ENST00000568422 CYP2C19P33261 490 aa20.22■□□□□ 0.83
CLN3-231ENST00000568422 SPICE1Q8N0Z3 855 aa20.22■□□□□ 0.83
CLN3-231ENST00000568422 GOPCQ9HD26 462 aa20.22■□□□□ 0.83
CLN3-231ENST00000568422 EEF2P13639 858 aaKnown RBP20.21■□□□□ 0.83
CLN3-231ENST00000568422 SYN1P17600 705 aa20.21■□□□□ 0.83
CLN3-231ENST00000568422 PLS1Q14651 629 aa20.21■□□□□ 0.83
CLN3-231ENST00000568422 SBK1Q52WX2 424 aa20.21■□□□□ 0.83
CLN3-231ENST00000568422 NCAPG2Q86XI2 1143 aa20.21■□□□□ 0.83
CLN3-231ENST00000568422 CLEC10AQ8IUN9 316 aa20.21■□□□□ 0.83
CLN3-231ENST00000568422 KBTBD3Q8NAB2 608 aa20.21■□□□□ 0.83
CLN3-231ENST00000568422 ATG4CQ96DT6 458 aa20.21■□□□□ 0.83
CLN3-231ENST00000568422 STRBPQ96SI9 672 aaKnown RBP20.21■□□□□ 0.83
CLN3-231ENST00000568422 ADAMTS5Q9UNA0 930 aa20.21■□□□□ 0.83
CLN3-231ENST00000568422 GREB1LQ9C091 1923 aaPredicted RBP20.21■□□□□ 0.83
CLN3-231ENST00000568422 DNM1LO00429 736 aa20.2■□□□□ 0.82
CLN3-231ENST00000568422 CYBAP13498 195 aa20.2■□□□□ 0.82
CLN3-231ENST00000568422 MAGEA10P43363 369 aaPredicted RBP20.2■□□□□ 0.82
CLN3-231ENST00000568422 LRRC26Q2I0M4 334 aa20.2■□□□□ 0.82
CLN3-231ENST00000568422 GPR153Q6NV75 609 aa20.2■□□□□ 0.82
CLN3-231ENST00000568422 SMIM22K7EJ46 135 aa20.19■□□□□ 0.82
CLN3-231ENST00000568422 COBLO75128 1261 aa20.19■□□□□ 0.82
CLN3-231ENST00000568422 ZFYP08048 801 aaPredicted RBP20.19■□□□□ 0.82
CLN3-231ENST00000568422 FCER1AP12319 257 aa20.19■□□□□ 0.82
CLN3-231ENST00000568422 TMEM132BQ14DG7 1078 aa20.19■□□□□ 0.82
Retrieved 100 of 20,778 RNA–protein pairs in 27.9 ms