RNA–Protein interactions for RNA: ENST00000567495.6

CLN3-227, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 769 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-227ENST00000567495 TANGO6Q9C0B7 1094 aa22.29■■□□□ 1.16
CLN3-227ENST00000567495 GJD2Q9UKL4 321 aa22.29■■□□□ 1.16
CLN3-227ENST00000567495 SPDYE16A6NNV3 312 aaPredicted RBP22.28■■□□□ 1.16
CLN3-227ENST00000567495 WDR46O15213 610 aaKnown RBP22.28■■□□□ 1.16
CLN3-227ENST00000567495 CAPN2P17655 700 aa22.28■■□□□ 1.16
CLN3-227ENST00000567495 ATP2B2Q01814 1243 aa22.28■■□□□ 1.16
CLN3-227ENST00000567495 PPARAQ07869 468 aa22.28■■□□□ 1.16
CLN3-227ENST00000567495 ALX1Q15699 326 aa22.28■■□□□ 1.16
CLN3-227ENST00000567495 MB21D1Q8N884 522 aa22.28■■□□□ 1.16
CLN3-227ENST00000567495 NKX2-3Q8TAU0 364 aa22.28■■□□□ 1.16
CLN3-227ENST00000567495 NUDT12Q9BQG2 462 aa22.28■■□□□ 1.16
CLN3-227ENST00000567495 GNL3Q9BVP2 549 aaKnown RBP eCLIP22.28■■□□□ 1.16
CLN3-227ENST00000567495 NYAP2Q9P242 653 aa22.28■■□□□ 1.16
CLN3-227ENST00000567495 BAZ2AQ9UIF9 1905 aaKnown RBP22.27■■□□□ 1.16
CLN3-227ENST00000567495 Q3C1V9 767 aa22.27■■□□□ 1.16
CLN3-227ENST00000567495 POTEEQ6S8J3 1075 aa22.27■■□□□ 1.16
CLN3-227ENST00000567495 CLEC10AQ8IUN9 316 aa22.27■■□□□ 1.16
CLN3-227ENST00000567495 RILPL2Q969X0 211 aa22.27■■□□□ 1.16
CLN3-227ENST00000567495 SYNPO2Q9UMS6 1093 aa22.27■■□□□ 1.16
CLN3-227ENST00000567495 MYCP01106 439 aaPredicted RBP22.26■■□□□ 1.15
CLN3-227ENST00000567495 GJB1P08034 283 aa22.26■■□□□ 1.15
CLN3-227ENST00000567495 XRCC5P13010 732 aaKnown RBP22.26■■□□□ 1.15
CLN3-227ENST00000567495 EN2P19622 333 aaPredicted RBP22.26■■□□□ 1.15
CLN3-227ENST00000567495 MFAP1P55081 439 aaKnown RBP22.26■■□□□ 1.15
CLN3-227ENST00000567495 PPP4R3BQ5MIZ7 849 aa22.26■■□□□ 1.15
CLN3-227ENST00000567495 CCDC129Q6ZRS4 1044 aa22.26■■□□□ 1.15
CLN3-227ENST00000567495 PLEKHH3Q7Z736 793 aa22.26■■□□□ 1.15
CLN3-227ENST00000567495 TRMT44Q8IYL2 757 aaKnown RBP22.26■■□□□ 1.15
CLN3-227ENST00000567495 STK11IPQ8N1F8 1099 aa22.26■■□□□ 1.15
CLN3-227ENST00000567495 CWC22Q9HCG8 908 aaKnown RBP22.26■■□□□ 1.15
CLN3-227ENST00000567495 ZSWIM8A7E2V4 1837 aa22.25■■□□□ 1.15
CLN3-227ENST00000567495 HIP1O00291 1037 aa22.25■■□□□ 1.15
CLN3-227ENST00000567495 CNMDO75829 334 aa22.25■■□□□ 1.15
CLN3-227ENST00000567495 FLOT1O75955 427 aa22.25■■□□□ 1.15
CLN3-227ENST00000567495 CCL5P13501 91 aa22.25■■□□□ 1.15
CLN3-227ENST00000567495 ELNP15502 786 aa22.25■■□□□ 1.15
CLN3-227ENST00000567495 MTFR1Q15390 333 aa22.25■■□□□ 1.15
CLN3-227ENST00000567495 KIAA1755Q5JYT7 1200 aa22.25■■□□□ 1.15
CLN3-227ENST00000567495 GPR142Q7Z601 462 aa22.25■■□□□ 1.15
CLN3-227ENST00000567495 SPICE1Q8N0Z3 855 aa22.25■■□□□ 1.15
CLN3-227ENST00000567495 FAM227BQ96M60 508 aa22.25■■□□□ 1.15
CLN3-227ENST00000567495 RNF208Q9H0X6 261 aa22.25■■□□□ 1.15
CLN3-227ENST00000567495 PORCNQ9H237 461 aa22.25■■□□□ 1.15
CLN3-227ENST00000567495 CENPFP49454 3210 aa22.25■■□□□ 1.15
CLN3-227ENST00000567495 A0A0D9SFI3 127 aa22.24■■□□□ 1.15
CLN3-227ENST00000567495 FOXP2O15409 715 aa22.24■■□□□ 1.15
CLN3-227ENST00000567495 HMGCRP04035 888 aa22.24■■□□□ 1.15
CLN3-227ENST00000567495 INHAP05111 366 aa22.24■■□□□ 1.15
CLN3-227ENST00000567495 SDSP20132 328 aa22.24■■□□□ 1.15
CLN3-227ENST00000567495 DSG3P32926 999 aa22.24■■□□□ 1.15
CLN3-227ENST00000567495 IRX6P78412 446 aaPredicted RBP22.24■■□□□ 1.15
CLN3-227ENST00000567495 NEDD1Q8NHV4 660 aa22.24■■□□□ 1.15
CLN3-227ENST00000567495 ANAPC4Q9UJX5 808 aa22.24■■□□□ 1.15
CLN3-227ENST00000567495 IGKV6D-41A0A0C4DH26 115 aa22.23■■□□□ 1.15
CLN3-227ENST00000567495 PEX10O60683 326 aa22.23■■□□□ 1.15
CLN3-227ENST00000567495 PRDM1O75626 825 aa22.23■■□□□ 1.15
CLN3-227ENST00000567495 TSPY3P0CV98 308 aa22.23■■□□□ 1.15
CLN3-227ENST00000567495 TSPY8P0CW00 308 aa22.23■■□□□ 1.15
CLN3-227ENST00000567495 RGS2P41220 211 aa22.23■■□□□ 1.15
CLN3-227ENST00000567495 NMIQ13287 307 aaPredicted RBP22.23■■□□□ 1.15
CLN3-227ENST00000567495 VPS53Q5VIR6 699 aa22.23■■□□□ 1.15
CLN3-227ENST00000567495 MKL1Q969V6 931 aa22.23■■□□□ 1.15
CLN3-227ENST00000567495 MTMR4Q9NYA4 1195 aa22.23■■□□□ 1.15
CLN3-227ENST00000567495 BTBD7Q9P203 1132 aa22.23■■□□□ 1.15
CLN3-227ENST00000567495 IVNS1ABPQ9Y6Y0 642 aa22.23■■□□□ 1.15
CLN3-227ENST00000567495 TTLL1O95922 423 aa22.22■■□□□ 1.15
CLN3-227ENST00000567495 GJA8P48165 433 aa22.22■■□□□ 1.15
CLN3-227ENST00000567495 MORN1Q5T089 497 aa22.22■■□□□ 1.15
CLN3-227ENST00000567495 SHCBP1Q8NEM2 672 aa22.22■■□□□ 1.15
CLN3-227ENST00000567495 DIAPH3Q9NSV4 1193 aa22.22■■□□□ 1.15
CLN3-227ENST00000567495 ZMYM6O95789 1325 aa22.22■■□□□ 1.15
CLN3-227ENST00000567495 CCDC171Q6TFL3 1326 aa22.22■■□□□ 1.15
CLN3-227ENST00000567495 PLIN4Q96Q06 1357 aa22.22■■□□□ 1.15
CLN3-227ENST00000567495 SLC15A5A6NIM6 579 aa22.21■■□□□ 1.15
CLN3-227ENST00000567495 F5H6K3 240 aa22.21■■□□□ 1.15
CLN3-227ENST00000567495 STRNO43815 780 aa22.21■■□□□ 1.15
CLN3-227ENST00000567495 RAD21O60216 631 aa22.21■■□□□ 1.15
CLN3-227ENST00000567495 TFAP4Q01664 338 aa22.21■■□□□ 1.15
CLN3-227ENST00000567495 KLRC3Q07444 240 aa22.21■■□□□ 1.15
CLN3-227ENST00000567495 USP6NLQ92738 828 aa22.21■■□□□ 1.15
CLN3-227ENST00000567495 CEP95Q96GE4 821 aa22.21■■□□□ 1.15
CLN3-227ENST00000567495 SPATC1LQ9H0A9 340 aa22.21■■□□□ 1.15
CLN3-227ENST00000567495 CLIP2Q9UDT6 1046 aa22.21■■□□□ 1.15
CLN3-227ENST00000567495 MGAMO43451 1857 aa22.2■■□□□ 1.14
CLN3-227ENST00000567495 FGAP02671 866 aa22.2■■□□□ 1.14
CLN3-227ENST00000567495 HSPD1P10809 573 aaKnown RBP22.2■■□□□ 1.14
CLN3-227ENST00000567495 CYP2B6P20813 491 aa22.2■■□□□ 1.14
CLN3-227ENST00000567495 WDR78Q5VTH9 848 aa22.2■■□□□ 1.14
CLN3-227ENST00000567495 APBA2Q99767 749 aa22.2■■□□□ 1.14
CLN3-227ENST00000567495 UNC93B1Q9H1C4 597 aa22.2■■□□□ 1.14
CLN3-227ENST00000567495 ADAMTS5Q9UNA0 930 aa22.2■■□□□ 1.14
CLN3-227ENST00000567495 DDX52Q9Y2R4 599 aaKnown RBP eCLIP22.2■■□□□ 1.14
CLN3-227ENST00000567495 PDE4DIPQ5VU43 2346 aa22.19■■□□□ 1.14
CLN3-227ENST00000567495 ORC4O43929 436 aa22.19■■□□□ 1.14
CLN3-227ENST00000567495 FGRP09769 529 aa22.19■■□□□ 1.14
CLN3-227ENST00000567495 PCP11498 1178 aaKnown RBP22.19■■□□□ 1.14
CLN3-227ENST00000567495 PTPREP23469 700 aa22.19■■□□□ 1.14
CLN3-227ENST00000567495 MAP2K5Q13163 448 aa22.19■■□□□ 1.14
CLN3-227ENST00000567495 FAM83BQ5T0W9 1011 aa22.19■■□□□ 1.14
CLN3-227ENST00000567495 ZNF589Q86UQ0 364 aaPredicted RBP22.19■■□□□ 1.14
Retrieved 100 of 20,778 RNA–protein pairs in 22.1 ms