RNA–Protein interactions for RNA: ENST00000566083.6

CLN3-222, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,409 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-222ENST00000566083 TANGO6Q9C0B7 1094 aa17.91■□□□□ 0.46
CLN3-222ENST00000566083 SLC5A4Q9NY91 659 aa17.91■□□□□ 0.46
CLN3-222ENST00000566083 ARPP21Q9UBL0 812 aaPredicted RBP17.91■□□□□ 0.46
CLN3-222ENST00000566083 TMX2Q9Y320 296 aa17.91■□□□□ 0.46
CLN3-222ENST00000566083 PLXNB2O15031 1838 aa17.91■□□□□ 0.46
CLN3-222ENST00000566083 A0A1W2PRG0 241 aa17.9■□□□□ 0.46
CLN3-222ENST00000566083 PRKAB2O43741 272 aa17.9■□□□□ 0.46
CLN3-222ENST00000566083 MSCO60682 206 aa17.9■□□□□ 0.46
CLN3-222ENST00000566083 CDK8P49336 464 aa17.9■□□□□ 0.46
CLN3-222ENST00000566083 CACNB2Q08289 660 aaPredicted RBP17.9■□□□□ 0.46
CLN3-222ENST00000566083 GIMAP6Q6P9H5 292 aa17.9■□□□□ 0.46
CLN3-222ENST00000566083 POTEEQ6S8J3 1075 aa17.9■□□□□ 0.46
CLN3-222ENST00000566083 SHCBP1Q8NEM2 672 aa17.9■□□□□ 0.46
CLN3-222ENST00000566083 C11orf49Q9H6J7 331 aa17.9■□□□□ 0.46
CLN3-222ENST00000566083 KANSL2Q9H9L4 492 aa17.9■□□□□ 0.46
CLN3-222ENST00000566083 CYP2D6P10635 497 aa17.89■□□□□ 0.46
CLN3-222ENST00000566083 ATP2B2Q01814 1243 aa17.89■□□□□ 0.46
CLN3-222ENST00000566083 GRB14Q14449 540 aa17.89■□□□□ 0.46
CLN3-222ENST00000566083 KBTBD3Q8NAB2 608 aa17.89■□□□□ 0.46
CLN3-222ENST00000566083 SLC44A5Q8NCS7 719 aa17.89■□□□□ 0.46
CLN3-222ENST00000566083 DYNLL2Q96FJ2 89 aa17.89■□□□□ 0.46
CLN3-222ENST00000566083 VCPKMTQ9H867 229 aa17.89■□□□□ 0.46
CLN3-222ENST00000566083 BTBD7Q9P203 1132 aa17.89■□□□□ 0.46
CLN3-222ENST00000566083 WDR46O15213 610 aaKnown RBP17.89■□□□□ 0.45
CLN3-222ENST00000566083 AKR1B1P15121 316 aa17.89■□□□□ 0.45
CLN3-222ENST00000566083 SPATC1LQ9H0A9 340 aa17.89■□□□□ 0.45
CLN3-222ENST00000566083 MROH8Q9H579 483 aa17.89■□□□□ 0.45
CLN3-222ENST00000566083 ZNF287Q9HBT7 754 aa17.89■□□□□ 0.45
CLN3-222ENST00000566083 GOPCQ9HD26 462 aa17.89■□□□□ 0.45
CLN3-222ENST00000566083 RBM27Q9P2N5 1060 aaKnown RBP17.89■□□□□ 0.45
CLN3-222ENST00000566083 MYH7P12883 1935 aa17.88■□□□□ 0.45
CLN3-222ENST00000566083 MYH8P13535 1937 aa17.88■□□□□ 0.45
CLN3-222ENST00000566083 SMARCA5O60264 1052 aaPredicted RBP17.88■□□□□ 0.45
CLN3-222ENST00000566083 FLOT1O75955 427 aa17.88■□□□□ 0.45
CLN3-222ENST00000566083 GNAT2P19087 354 aa17.88■□□□□ 0.45
CLN3-222ENST00000566083 DSG3P32926 999 aa17.88■□□□□ 0.45
CLN3-222ENST00000566083 SBK1Q52WX2 424 aa17.88■□□□□ 0.45
CLN3-222ENST00000566083 CTR9Q6PD62 1173 aa17.88■□□□□ 0.45
CLN3-222ENST00000566083 DPP9Q86TI2 863 aa17.88■□□□□ 0.45
CLN3-222ENST00000566083 ABRAQ8N0Z2 381 aa17.88■□□□□ 0.45
CLN3-222ENST00000566083 DIS3LQ8TF46 1054 aaKnown RBP17.88■□□□□ 0.45
CLN3-222ENST00000566083 PUS7LQ9H0K6 701 aaKnown RBP17.88■□□□□ 0.45
CLN3-222ENST00000566083 ERC2O15083 957 aa17.87■□□□□ 0.45
CLN3-222ENST00000566083 CCL14Q16627 93 aa17.87■□□□□ 0.45
CLN3-222ENST00000566083 APPBP2Q92624 585 aa17.87■□□□□ 0.45
CLN3-222ENST00000566083 STRBPQ96SI9 672 aaKnown RBP17.87■□□□□ 0.45
CLN3-222ENST00000566083 MOV10L1Q9BXT6 1211 aaKnown RBP17.87■□□□□ 0.45
CLN3-222ENST00000566083 PRO3102Q9H379 93 aa17.87■□□□□ 0.45
CLN3-222ENST00000566083 TTC41PQ6P2S7 1318 aa17.87■□□□□ 0.45
CLN3-222ENST00000566083 BAZ2AQ9UIF9 1905 aaKnown RBP17.86■□□□□ 0.45
CLN3-222ENST00000566083 RNF113AO15541 343 aaKnown RBP17.86■□□□□ 0.45
CLN3-222ENST00000566083 EVX2Q03828 476 aa17.86■□□□□ 0.45
CLN3-222ENST00000566083 SLFNL1Q499Z3 407 aa17.86■□□□□ 0.45
CLN3-222ENST00000566083 OLFML2BQ68BL8 750 aa17.86■□□□□ 0.45
CLN3-222ENST00000566083 SLC25A27O95847 323 aa17.85■□□□□ 0.45
CLN3-222ENST00000566083 CCND3P30281 292 aaPredicted RBP17.85■□□□□ 0.45
CLN3-222ENST00000566083 COPB2P35606 906 aa17.85■□□□□ 0.45
CLN3-222ENST00000566083 MNX1P50219 401 aaPredicted RBP17.85■□□□□ 0.45
CLN3-222ENST00000566083 LHX8Q68G74 356 aa17.85■□□□□ 0.45
CLN3-222ENST00000566083 SIAH1Q8IUQ4 282 aa17.85■□□□□ 0.45
CLN3-222ENST00000566083 MKNK2Q9HBH9 465 aa17.85■□□□□ 0.45
CLN3-222ENST00000566083 CYP2D7A0A087X1C5 515 aa17.84■□□□□ 0.45
CLN3-222ENST00000566083 EEF2P13639 858 aaKnown RBP17.84■□□□□ 0.45
CLN3-222ENST00000566083 ERCC3P19447 782 aa17.84■□□□□ 0.45
CLN3-222ENST00000566083 ADORA2AP29274 412 aa17.84■□□□□ 0.45
CLN3-222ENST00000566083 PLS1Q14651 629 aa17.84■□□□□ 0.45
CLN3-222ENST00000566083 SPICE1Q8N0Z3 855 aa17.84■□□□□ 0.45
CLN3-222ENST00000566083 ZBTB47Q9UFB7 747 aaPredicted RBP17.84■□□□□ 0.45
CLN3-222ENST00000566083 GSG1L2A8MUP6 293 aa17.83■□□□□ 0.45
CLN3-222ENST00000566083 COL6A1P12109 1028 aa17.83■□□□□ 0.45
CLN3-222ENST00000566083 FCER1AP12319 257 aa17.83■□□□□ 0.45
CLN3-222ENST00000566083 BMP8BP34820 402 aa17.83■□□□□ 0.45
CLN3-222ENST00000566083 C7orf61Q8IZ16 206 aa17.83■□□□□ 0.45
CLN3-222ENST00000566083 NACAP1Q9BZK3 213 aa17.83■□□□□ 0.45
CLN3-222ENST00000566083 DDX20Q9UHI6 824 aaKnown RBP17.83■□□□□ 0.45
CLN3-222ENST00000566083 ADAMTS5Q9UNA0 930 aa17.83■□□□□ 0.45
CLN3-222ENST00000566083 CNGA1P29973 690 aa17.82■□□□□ 0.44
CLN3-222ENST00000566083 NCAPG2Q86XI2 1143 aa17.82■□□□□ 0.44
CLN3-222ENST00000566083 NPLOC4Q8TAT6 608 aa17.82■□□□□ 0.44
CLN3-222ENST00000566083 OSBP2Q969R2 916 aa17.82■□□□□ 0.44
CLN3-222ENST00000566083 ATG4CQ96DT6 458 aa17.82■□□□□ 0.44
CLN3-222ENST00000566083 FLRT1Q9NZU1 646 aa17.82■□□□□ 0.44
CLN3-222ENST00000566083 NYAP2Q9P242 653 aa17.82■□□□□ 0.44
CLN3-222ENST00000566083 SYNPO2Q9UMS6 1093 aa17.82■□□□□ 0.44
CLN3-222ENST00000566083 GPAA1O43292 621 aa17.81■□□□□ 0.44
CLN3-222ENST00000566083 IGHA2P01877 340 aa17.81■□□□□ 0.44
CLN3-222ENST00000566083 CHGBP05060 677 aa17.81■□□□□ 0.44
CLN3-222ENST00000566083 APPP05067 770 aa17.81■□□□□ 0.44
CLN3-222ENST00000566083 TDO2P48775 406 aa17.81■□□□□ 0.44
CLN3-222ENST00000566083 KIAA1755Q5JYT7 1200 aa17.81■□□□□ 0.44
CLN3-222ENST00000566083 ZNF444Q8N0Y2 327 aaPredicted RBP17.81■□□□□ 0.44
CLN3-222ENST00000566083 ARRDC4Q8NCT1 418 aa17.81■□□□□ 0.44
CLN3-222ENST00000566083 NRBP1Q9UHY1 535 aa17.81■□□□□ 0.44
CLN3-222ENST00000566083 ROBO3Q96MS0 1386 aa17.81■□□□□ 0.44
CLN3-222ENST00000566083 ZNF236Q9UL36 1845 aa17.81■□□□□ 0.44
CLN3-222ENST00000566083 MINDY4BA8MYZ0 360 aa17.81■□□□□ 0.44
CLN3-222ENST00000566083 PATL2C9JE40 543 aaKnown RBP17.81■□□□□ 0.44
CLN3-222ENST00000566083 DNM1LO00429 736 aa17.81■□□□□ 0.44
CLN3-222ENST00000566083 SLC3A2P08195 630 aaKnown RBP17.81■□□□□ 0.44
CLN3-222ENST00000566083 CYBAP13498 195 aa17.81■□□□□ 0.44
Retrieved 100 of 20,778 RNA–protein pairs in 26.6 ms