RNA–Protein interactions for RNA: ENST00000566009.5

SMPD3-206, Transcript of sphingomyelin phosphodiesterase 3, humanhuman

TSL 4

Gene SMPD3, Length 586 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMPD3-206ENST00000566009 ADSSL1Q8N142 457 aa11.46□□□□□ -0.57
SMPD3-206ENST00000566009 PI4KAP1Q8N8J0 262 aa11.46□□□□□ -0.57
SMPD3-206ENST00000566009 TSEN34Q9BSV6 310 aaKnown RBP11.46□□□□□ -0.57
SMPD3-206ENST00000566009 AS3MTQ9HBK9 375 aa11.46□□□□□ -0.57
SMPD3-206ENST00000566009 CHMP3Q9Y3E7 222 aa11.46□□□□□ -0.57
SMPD3-206ENST00000566009 MYO15AQ9UKN7 3530 aa11.46□□□□□ -0.58
SMPD3-206ENST00000566009 FAM196BA6NMK8 535 aa11.45□□□□□ -0.58
SMPD3-206ENST00000566009 CAP2P40123 477 aa11.45□□□□□ -0.58
SMPD3-206ENST00000566009 NCBP3Q53F19 620 aaKnown RBP11.45□□□□□ -0.58
SMPD3-206ENST00000566009 ADHFE1Q8IWW8 467 aa11.45□□□□□ -0.58
SMPD3-206ENST00000566009 NEK9Q8TD19 979 aa11.45□□□□□ -0.58
SMPD3-206ENST00000566009 WDR18Q9BV38 432 aa11.45□□□□□ -0.58
SMPD3-206ENST00000566009 SMCHD1A6NHR9 2005 aa11.44□□□□□ -0.58
SMPD3-206ENST00000566009 H3BQ06 376 aaPredicted RBP11.44□□□□□ -0.58
SMPD3-206ENST00000566009 VCPP55072 806 aaKnown RBP11.44□□□□□ -0.58
SMPD3-206ENST00000566009 RRP1BQ14684 758 aaKnown RBP11.44□□□□□ -0.58
SMPD3-206ENST00000566009 CAVIN4Q5BKX8 364 aa11.44□□□□□ -0.58
SMPD3-206ENST00000566009 SPRED2Q7Z698 418 aa11.44□□□□□ -0.58
SMPD3-206ENST00000566009 PNNQ9H307 717 aaKnown RBP11.44□□□□□ -0.58
SMPD3-206ENST00000566009 TIMELESSQ9UNS1 1208 aa11.44□□□□□ -0.58
SMPD3-206ENST00000566009 KMT2EQ8IZD2 1858 aa11.44□□□□□ -0.58
SMPD3-206ENST00000566009 NCOR2Q9Y618 2525 aa11.44□□□□□ -0.58
SMPD3-206ENST00000566009 C19orf81C9J6K1 198 aa11.43□□□□□ -0.58
SMPD3-206ENST00000566009 ADAMTS4O75173 837 aa11.43□□□□□ -0.58
SMPD3-206ENST00000566009 ADORA2AP29274 412 aa11.43□□□□□ -0.58
SMPD3-206ENST00000566009 AVPR2P30518 371 aa11.43□□□□□ -0.58
SMPD3-206ENST00000566009 NBL1P41271 181 aa11.43□□□□□ -0.58
SMPD3-206ENST00000566009 FOXO4P98177 505 aa11.43□□□□□ -0.58
SMPD3-206ENST00000566009 LMOD3Q0VAK6 560 aa11.43□□□□□ -0.58
SMPD3-206ENST00000566009 TAF7LQ5H9L4 462 aa11.43□□□□□ -0.58
SMPD3-206ENST00000566009 RNF135Q8IUD6 432 aa11.43□□□□□ -0.58
SMPD3-206ENST00000566009 FAM126BQ8IXS8 530 aa11.43□□□□□ -0.58
SMPD3-206ENST00000566009 FAM50BQ9Y247 325 aa11.43□□□□□ -0.58
SMPD3-206ENST00000566009 ELP1O95163 1332 aa11.42□□□□□ -0.58
SMPD3-206ENST00000566009 UMODL1Q5DID0 1318 aa11.42□□□□□ -0.58
SMPD3-206ENST00000566009 MOXD2PA6NHM9 499 aa11.42□□□□□ -0.58
SMPD3-206ENST00000566009 TLR3O15455 904 aaKnown RBP11.42□□□□□ -0.58
SMPD3-206ENST00000566009 COBLO75128 1261 aa11.42□□□□□ -0.58
SMPD3-206ENST00000566009 CCL23P55773 120 aa11.42□□□□□ -0.58
SMPD3-206ENST00000566009 KCNA10Q16322 511 aa11.42□□□□□ -0.58
SMPD3-206ENST00000566009 CCDC57Q2TAC2 916 aa11.42□□□□□ -0.58
SMPD3-206ENST00000566009 RPUSD2Q8IZ73 545 aaKnown RBP11.42□□□□□ -0.58
SMPD3-206ENST00000566009 GDPD5Q8WTR4 605 aa11.42□□□□□ -0.58
SMPD3-206ENST00000566009 DDX4Q9NQI0 724 aaKnown RBP11.42□□□□□ -0.58
SMPD3-206ENST00000566009 CHD6Q8TD26 2715 aa11.42□□□□□ -0.58
SMPD3-206ENST00000566009 TRIOO75962 3097 aa11.41□□□□□ -0.58
SMPD3-206ENST00000566009 ACACBO00763 2458 aa11.41□□□□□ -0.58
SMPD3-206ENST00000566009 ARVCFO00192 962 aa11.41□□□□□ -0.58
SMPD3-206ENST00000566009 CD4P01730 458 aa11.41□□□□□ -0.58
SMPD3-206ENST00000566009 TMPOP42166 694 aaKnown RBP11.41□□□□□ -0.58
SMPD3-206ENST00000566009 PICALMQ13492 652 aa11.41□□□□□ -0.58
SMPD3-206ENST00000566009 PUM1Q14671 1186 aaKnown RBP eCLIP11.41□□□□□ -0.58
SMPD3-206ENST00000566009 CCSAPQ6IQ19 270 aaPredicted RBP11.41□□□□□ -0.58
SMPD3-206ENST00000566009 KLHDC9Q8NEP7 349 aa11.41□□□□□ -0.58
SMPD3-206ENST00000566009 WDR66Q8TBY9 1149 aa11.41□□□□□ -0.58
SMPD3-206ENST00000566009 NKD2Q969F2 451 aaPredicted RBP11.41□□□□□ -0.58
SMPD3-206ENST00000566009 VWCEQ96DN2 955 aa11.41□□□□□ -0.58
SMPD3-206ENST00000566009 GLT1D1Q96MS3 346 aa11.41□□□□□ -0.58
SMPD3-206ENST00000566009 HIPK3Q9H422 1215 aa11.41□□□□□ -0.58
SMPD3-206ENST00000566009 BTBD7Q9P203 1132 aa11.41□□□□□ -0.58
SMPD3-206ENST00000566009 RFX7Q2KHR2 1363 aa11.41□□□□□ -0.58
SMPD3-206ENST00000566009 USP17L10C9JJH3 530 aa11.4□□□□□ -0.58
SMPD3-206ENST00000566009 ELL2O00472 640 aaPredicted RBP11.4□□□□□ -0.58
SMPD3-206ENST00000566009 STRNO43815 780 aa11.4□□□□□ -0.58
SMPD3-206ENST00000566009 HOXB3P14651 431 aaPredicted RBP11.4□□□□□ -0.58
SMPD3-206ENST00000566009 PRDX5P30044 214 aa11.4□□□□□ -0.58
SMPD3-206ENST00000566009 DSG3P32926 999 aa11.4□□□□□ -0.58
SMPD3-206ENST00000566009 ZEB1P37275 1124 aaPredicted RBP11.4□□□□□ -0.58
SMPD3-206ENST00000566009 TTLL4Q14679 1199 aa11.4□□□□□ -0.58
SMPD3-206ENST00000566009 VTI1AQ96AJ9 217 aa11.4□□□□□ -0.58
SMPD3-206ENST00000566009 LENG1Q96BZ8 264 aaPredicted RBP11.4□□□□□ -0.58
SMPD3-206ENST00000566009 PUS3Q9BZE2 481 aaKnown RBP11.4□□□□□ -0.58
SMPD3-206ENST00000566009 EMILIN3Q9NT22 766 aa11.4□□□□□ -0.58
SMPD3-206ENST00000566009 COL4A4P53420 1690 aaPredicted RBP11.4□□□□□ -0.59
SMPD3-206ENST00000566009 DNAH14Q0VDD8 3507 aa11.39□□□□□ -0.59
SMPD3-206ENST00000566009 KIF28PB7ZC32 967 aa11.39□□□□□ -0.59
SMPD3-206ENST00000566009 KDM4AO75164 1064 aa11.39□□□□□ -0.59
SMPD3-206ENST00000566009 LMBR1LQ6UX01 489 aa11.39□□□□□ -0.59
SMPD3-206ENST00000566009 PHOSPHO2Q8TCD6 241 aa11.39□□□□□ -0.59
SMPD3-206ENST00000566009 MAML3Q96JK9 1138 aa11.39□□□□□ -0.59
SMPD3-206ENST00000566009 SUGCTQ9HAC7 445 aa11.39□□□□□ -0.59
SMPD3-206ENST00000566009 SLC5A4Q9NY91 659 aa11.39□□□□□ -0.59
SMPD3-206ENST00000566009 NRBP1Q9UHY1 535 aa11.39□□□□□ -0.59
SMPD3-206ENST00000566009 GVINP1Q7Z2Y8 2422 aa11.38□□□□□ -0.59
SMPD3-206ENST00000566009 A0A0U1RQG5 324 aaPredicted RBP11.38□□□□□ -0.59
SMPD3-206ENST00000566009 NUBP1P53384 320 aa11.38□□□□□ -0.59
SMPD3-206ENST00000566009 ZXDAP98168 799 aa11.38□□□□□ -0.59
SMPD3-206ENST00000566009 HERC6Q8IVU3 1022 aa11.38□□□□□ -0.59
SMPD3-206ENST00000566009 SLC9A7Q96T83 725 aa11.38□□□□□ -0.59
SMPD3-206ENST00000566009 POP1Q99575 1024 aaKnown RBP11.38□□□□□ -0.59
SMPD3-206ENST00000566009 WNT8AQ9H1J5 351 aa11.38□□□□□ -0.59
SMPD3-206ENST00000566009 DMDP11532 3685 aa11.38□□□□□ -0.59
SMPD3-206ENST00000566009 ATAD5Q96QE3 1844 aa11.37□□□□□ -0.59
SMPD3-206ENST00000566009 USP17L15C9J2P7 530 aa11.37□□□□□ -0.59
SMPD3-206ENST00000566009 USP17L13C9JLJ4 530 aa11.37□□□□□ -0.59
SMPD3-206ENST00000566009 USP17L11C9JVI0 530 aa11.37□□□□□ -0.59
SMPD3-206ENST00000566009 USP17L18D6R9N7 530 aa11.37□□□□□ -0.59
SMPD3-206ENST00000566009 USP17L22D6RA61 530 aa11.37□□□□□ -0.59
SMPD3-206ENST00000566009 USP17L17D6RBQ6 530 aa11.37□□□□□ -0.59
SMPD3-206ENST00000566009 USP17L19D6RCP7 530 aa11.37□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 25.4 ms