RNA–Protein interactions for RNA: ENST00000563842.5

CLK3-213, Transcript of CDC like kinase 3, humanhuman

TSL 5

Gene CLK3, Length 860 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-213ENST00000563842 CTGFP29279 349 aa15.91■□□□□ 0.14
CLK3-213ENST00000563842 CWC27Q6UX04 472 aaKnown RBP15.91■□□□□ 0.14
CLK3-213ENST00000563842 CENPQQ7L2Z9 268 aaPredicted RBP15.91■□□□□ 0.14
CLK3-213ENST00000563842 CCAR1Q8IX12 1150 aaKnown RBP15.91■□□□□ 0.14
CLK3-213ENST00000563842 ARMC5Q96C12 935 aa15.91■□□□□ 0.14
CLK3-213ENST00000563842 HOXC10Q9NYD6 342 aa15.91■□□□□ 0.14
CLK3-213ENST00000563842 NYAP2Q9P242 653 aa15.91■□□□□ 0.14
CLK3-213ENST00000563842 ANAPC4Q9UJX5 808 aa15.91■□□□□ 0.14
CLK3-213ENST00000563842 RABGAP1Q9Y3P9 1069 aa15.91■□□□□ 0.14
CLK3-213ENST00000563842 PARP14Q460N5 1801 aa15.91■□□□□ 0.14
CLK3-213ENST00000563842 WDR46O15213 610 aaKnown RBP15.9■□□□□ 0.14
CLK3-213ENST00000563842 FGAP02671 866 aa15.9■□□□□ 0.14
CLK3-213ENST00000563842 NEFLP07196 543 aa15.9■□□□□ 0.14
CLK3-213ENST00000563842 TSPY3P0CV98 308 aa15.9■□□□□ 0.14
CLK3-213ENST00000563842 TSPY8P0CW00 308 aa15.9■□□□□ 0.14
CLK3-213ENST00000563842 CCNA1P78396 465 aa15.9■□□□□ 0.14
CLK3-213ENST00000563842 COG2Q14746 738 aa15.9■□□□□ 0.14
CLK3-213ENST00000563842 VPS53Q5VIR6 699 aa15.9■□□□□ 0.14
CLK3-213ENST00000563842 LBX2Q6XYB7 198 aa15.9■□□□□ 0.14
CLK3-213ENST00000563842 SIAH1Q8IUQ4 282 aa15.9■□□□□ 0.14
CLK3-213ENST00000563842 TANGO6Q9C0B7 1094 aa15.9■□□□□ 0.14
CLK3-213ENST00000563842 SYNPO2Q9UMS6 1093 aa15.9■□□□□ 0.14
CLK3-213ENST00000563842 RLFQ13129 1914 aa15.9■□□□□ 0.14
CLK3-213ENST00000563842 FOXP2O15409 715 aa15.89■□□□□ 0.13
CLK3-213ENST00000563842 PRDM1O75626 825 aa15.89■□□□□ 0.13
CLK3-213ENST00000563842 ERVK-9P63128 1117 aa15.89■□□□□ 0.13
CLK3-213ENST00000563842 ERVK-24P63145 666 aa15.89■□□□□ 0.13
CLK3-213ENST00000563842 ZNF589Q86UQ0 364 aaPredicted RBP15.89■□□□□ 0.13
CLK3-213ENST00000563842 NEDD1Q8NHV4 660 aa15.89■□□□□ 0.13
CLK3-213ENST00000563842 RUFY2Q8WXA3 655 aa15.89■□□□□ 0.13
CLK3-213ENST00000563842 PAGR1Q9BTK6 254 aa15.89■□□□□ 0.13
CLK3-213ENST00000563842 RBPJLQ9UBG7 517 aa15.89■□□□□ 0.13
CLK3-213ENST00000563842 RBBP6Q7Z6E9 1792 aaKnown RBP15.89■□□□□ 0.13
CLK3-213ENST00000563842 PLIN4Q96Q06 1357 aa15.88■□□□□ 0.13
CLK3-213ENST00000563842 TSPY2A6NKD2 308 aa15.88■□□□□ 0.13
CLK3-213ENST00000563842 TTLL1O95922 423 aa15.88■□□□□ 0.13
CLK3-213ENST00000563842 PCP11498 1178 aaKnown RBP15.88■□□□□ 0.13
CLK3-213ENST00000563842 MAPK4P31152 587 aa15.88■□□□□ 0.13
CLK3-213ENST00000563842 TFAP4Q01664 338 aa15.88■□□□□ 0.13
CLK3-213ENST00000563842 PRKCZQ05513 592 aa15.88■□□□□ 0.13
CLK3-213ENST00000563842 CTDSPL2Q05D32 466 aa15.88■□□□□ 0.13
CLK3-213ENST00000563842 IRF5Q13568 498 aa15.88■□□□□ 0.13
CLK3-213ENST00000563842 CLEC10AQ8IUN9 316 aa15.88■□□□□ 0.13
CLK3-213ENST00000563842 MB21D1Q8N884 522 aa15.88■□□□□ 0.13
CLK3-213ENST00000563842 SLAIN1Q8ND83 568 aa15.88■□□□□ 0.13
CLK3-213ENST00000563842 GNL3Q9BVP2 549 aaKnown RBP eCLIP15.88■□□□□ 0.13
CLK3-213ENST00000563842 CWC22Q9HCG8 908 aaKnown RBP15.88■□□□□ 0.13
CLK3-213ENST00000563842 LAMA4Q16363 1823 aa15.88■□□□□ 0.13
CLK3-213ENST00000563842 COL11A1P12107 1806 aaPredicted RBP15.87■□□□□ 0.13
CLK3-213ENST00000563842 IGKV6D-41A0A0C4DH26 115 aa15.87■□□□□ 0.13
CLK3-213ENST00000563842 SPDYE16A6NNV3 312 aaPredicted RBP15.87■□□□□ 0.13
CLK3-213ENST00000563842 ORC4O43929 436 aa15.87■□□□□ 0.13
CLK3-213ENST00000563842 RAD21O60216 631 aa15.87■□□□□ 0.13
CLK3-213ENST00000563842 GSPT1P15170 499 aaKnown RBP15.87■□□□□ 0.13
CLK3-213ENST00000563842 GRK4P32298 578 aa15.87■□□□□ 0.13
CLK3-213ENST00000563842 FLT3LGP49771 235 aa15.87■□□□□ 0.13
CLK3-213ENST00000563842 NT5C2P49902 561 aa15.87■□□□□ 0.13
CLK3-213ENST00000563842 SPICE1Q8N0Z3 855 aa15.87■□□□□ 0.13
CLK3-213ENST00000563842 PXYLP1Q8TE99 480 aa15.87■□□□□ 0.13
CLK3-213ENST00000563842 MKL1Q969V6 931 aa15.87■□□□□ 0.13
CLK3-213ENST00000563842 CEP95Q96GE4 821 aa15.87■□□□□ 0.13
CLK3-213ENST00000563842 ZNF333Q96JL9 665 aa15.87■□□□□ 0.13
CLK3-213ENST00000563842 DSCC1Q9BVC3 393 aa15.87■□□□□ 0.13
CLK3-213ENST00000563842 TMEM106CQ9BVX2 250 aa15.87■□□□□ 0.13
CLK3-213ENST00000563842 RNF41Q9H4P4 317 aaPredicted RBP15.87■□□□□ 0.13
CLK3-213ENST00000563842 TXNRD2Q9NNW7 524 aa15.87■□□□□ 0.13
CLK3-213ENST00000563842 MTMR4Q9NYA4 1195 aa15.87■□□□□ 0.13
CLK3-213ENST00000563842 CLIP2Q9UDT6 1046 aa15.87■□□□□ 0.13
CLK3-213ENST00000563842 CTNNA3Q9UI47 895 aa15.87■□□□□ 0.13
CLK3-213ENST00000563842 DDX52Q9Y2R4 599 aaKnown RBP eCLIP15.87■□□□□ 0.13
CLK3-213ENST00000563842 RAD50Q92878 1312 aa15.87■□□□□ 0.13
CLK3-213ENST00000563842 ZNFX1Q9P2E3 1918 aaKnown RBP15.86■□□□□ 0.13
CLK3-213ENST00000563842 FLOT1O75955 427 aa15.86■□□□□ 0.13
CLK3-213ENST00000563842 FGRP09769 529 aa15.86■□□□□ 0.13
CLK3-213ENST00000563842 DSG3P32926 999 aa15.86■□□□□ 0.13
CLK3-213ENST00000563842 SOX10P56693 466 aa15.86■□□□□ 0.13
CLK3-213ENST00000563842 UBXN2AP68543 259 aa15.86■□□□□ 0.13
CLK3-213ENST00000563842 SOCS4Q8WXH5 440 aa15.86■□□□□ 0.13
CLK3-213ENST00000563842 TOMM22Q9NS69 142 aa15.86■□□□□ 0.13
CLK3-213ENST00000563842 BIN2Q9UBW5 565 aaPredicted RBP15.86■□□□□ 0.13
CLK3-213ENST00000563842 GABRQQ9UN88 632 aa15.86■□□□□ 0.13
CLK3-213ENST00000563842 PLXNB2O15031 1838 aa15.85■□□□□ 0.13
CLK3-213ENST00000563842 F5H6K3 240 aa15.85■□□□□ 0.13
CLK3-213ENST00000563842 ZNF213O14771 459 aa15.85■□□□□ 0.13
CLK3-213ENST00000563842 ADCY3O60266 1144 aa15.85■□□□□ 0.13
CLK3-213ENST00000563842 RANBP6O60518 1105 aaKnown RBP15.85■□□□□ 0.13
CLK3-213ENST00000563842 CENPBP07199 599 aaPredicted RBP15.85■□□□□ 0.13
CLK3-213ENST00000563842 KLRC3Q07444 240 aa15.85■□□□□ 0.13
CLK3-213ENST00000563842 Q3C1V9 767 aa15.85■□□□□ 0.13
CLK3-213ENST00000563842 FAM47AQ5JRC9 791 aa15.85■□□□□ 0.13
CLK3-213ENST00000563842 KIAA1755Q5JYT7 1200 aa15.85■□□□□ 0.13
CLK3-213ENST00000563842 MFSD6Q6ZSS7 791 aa15.85■□□□□ 0.13
CLK3-213ENST00000563842 SH3TC2Q8TF17 1288 aa15.85■□□□□ 0.13
CLK3-213ENST00000563842 CCDC136Q96JN2 1154 aa15.85■□□□□ 0.13
CLK3-213ENST00000563842 NUDT12Q9BQG2 462 aa15.85■□□□□ 0.13
CLK3-213ENST00000563842 A0A0G2JMZ2 1700 aa15.85■□□□□ 0.13
CLK3-213ENST00000563842 AKNAD1Q5T1N1 836 aa15.84■□□□□ 0.13
CLK3-213ENST00000563842 PLEKHH3Q7Z736 793 aa15.84■□□□□ 0.13
CLK3-213ENST00000563842 GMCL1P1Q8NEA9 526 aa15.84■□□□□ 0.13
CLK3-213ENST00000563842 IVNS1ABPQ9Y6Y0 642 aa15.84■□□□□ 0.13
Retrieved 100 of 20,778 RNA–protein pairs in 202 ms