RNA–Protein interactions for RNA: ENST00000561271.1

CDC42BPB-208, Transcript of CDC42 binding protein kinase beta, humanhuman

TSL 3

Gene CDC42BPB, Length 572 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDC42BPB-208ENST00000561271 GJA8P48165 433 aa20.6■□□□□ 0.89
CDC42BPB-208ENST00000561271 TDO2P48775 406 aa20.6■□□□□ 0.89
CDC42BPB-208ENST00000561271 LRRFIP1Q32MZ4 808 aaKnown RBP20.6■□□□□ 0.89
CDC42BPB-208ENST00000561271 SBK1Q52WX2 424 aa20.6■□□□□ 0.89
CDC42BPB-208ENST00000561271 GPR142Q7Z601 462 aa20.6■□□□□ 0.89
CDC42BPB-208ENST00000561271 SIAH1Q8IUQ4 282 aa20.6■□□□□ 0.89
CDC42BPB-208ENST00000561271 U2AF1L4Q8WU68 220 aaKnown RBP20.6■□□□□ 0.89
CDC42BPB-208ENST00000561271 SOCS4Q8WXH5 440 aa20.6■□□□□ 0.89
CDC42BPB-208ENST00000561271 BTBD7Q9P203 1132 aa20.6■□□□□ 0.89
CDC42BPB-208ENST00000561271 MCM3APO60318 1980 aa20.59■□□□□ 0.89
CDC42BPB-208ENST00000561271 ATP2B2Q01814 1243 aa20.59■□□□□ 0.89
CDC42BPB-208ENST00000561271 TRIM32Q13049 653 aa20.59■□□□□ 0.89
CDC42BPB-208ENST00000561271 GIMAP6Q6P9H5 292 aa20.59■□□□□ 0.89
CDC42BPB-208ENST00000561271 SPICE1Q8N0Z3 855 aa20.59■□□□□ 0.89
CDC42BPB-208ENST00000561271 NKX2-3Q8TAU0 364 aa20.59■□□□□ 0.89
CDC42BPB-208ENST00000561271 TRIB2Q92519 343 aa20.59■□□□□ 0.89
CDC42BPB-208ENST00000561271 NUDT12Q9BQG2 462 aa20.59■□□□□ 0.89
CDC42BPB-208ENST00000561271 SH2D4AQ9H788 454 aa20.59■□□□□ 0.89
CDC42BPB-208ENST00000561271 APPP05067 770 aa20.58■□□□□ 0.89
CDC42BPB-208ENST00000561271 EEF2P13639 858 aaKnown RBP20.58■□□□□ 0.89
CDC42BPB-208ENST00000561271 GNAT2P19087 354 aa20.58■□□□□ 0.89
CDC42BPB-208ENST00000561271 ZMYM1Q5SVZ6 1142 aa20.58■□□□□ 0.89
CDC42BPB-208ENST00000561271 WDR78Q5VTH9 848 aa20.58■□□□□ 0.89
CDC42BPB-208ENST00000561271 LBX2Q6XYB7 198 aa20.58■□□□□ 0.89
CDC42BPB-208ENST00000561271 EXOC6Q8TAG9 804 aa20.58■□□□□ 0.89
CDC42BPB-208ENST00000561271 DEFB118Q96PH6 123 aa20.58■□□□□ 0.89
CDC42BPB-208ENST00000561271 VCPKMTQ9H867 229 aa20.58■□□□□ 0.89
CDC42BPB-208ENST00000561271 CWC22Q9HCG8 908 aaKnown RBP20.58■□□□□ 0.89
CDC42BPB-208ENST00000561271 TMX2Q9Y320 296 aa20.58■□□□□ 0.89
CDC42BPB-208ENST00000561271 RASA1P20936 1047 aa20.57■□□□□ 0.88
CDC42BPB-208ENST00000561271 PDE1AP54750 535 aa20.57■□□□□ 0.88
CDC42BPB-208ENST00000561271 CCNA1P78396 465 aa20.57■□□□□ 0.88
CDC42BPB-208ENST00000561271 PLEKHH3Q7Z736 793 aa20.57■□□□□ 0.88
CDC42BPB-208ENST00000561271 LPAR1Q92633 364 aa20.57■□□□□ 0.88
CDC42BPB-208ENST00000561271 LNPKQ9C0E8 428 aa20.57■□□□□ 0.88
CDC42BPB-208ENST00000561271 XRN2Q9H0D6 950 aaKnown RBP eCLIP20.57■□□□□ 0.88
CDC42BPB-208ENST00000561271 PAK6Q9NQU5 681 aaPredicted RBP20.57■□□□□ 0.88
CDC42BPB-208ENST00000561271 SMCHD1A6NHR9 2005 aa20.56■□□□□ 0.88
CDC42BPB-208ENST00000561271 AAMPQ13685 434 aa20.56■□□□□ 0.88
CDC42BPB-208ENST00000561271 MORN1Q5T089 497 aa20.56■□□□□ 0.88
CDC42BPB-208ENST00000561271 CCDC129Q6ZRS4 1044 aa20.56■□□□□ 0.88
CDC42BPB-208ENST00000561271 IFNL3Q8IZI9 196 aa20.56■□□□□ 0.88
CDC42BPB-208ENST00000561271 GNL3Q9BVP2 549 aaKnown RBP eCLIP20.56■□□□□ 0.88
CDC42BPB-208ENST00000561271 KANSL2Q9H9L4 492 aa20.56■□□□□ 0.88
CDC42BPB-208ENST00000561271 STAP2Q9UGK3 403 aa20.56■□□□□ 0.88
CDC42BPB-208ENST00000561271 FLOT1O75955 427 aa20.55■□□□□ 0.88
CDC42BPB-208ENST00000561271 FARP2O94887 1054 aaPredicted RBP20.55■□□□□ 0.88
CDC42BPB-208ENST00000561271 SGPL1O95470 568 aa20.55■□□□□ 0.88
CDC42BPB-208ENST00000561271 RGS2P41220 211 aa20.55■□□□□ 0.88
CDC42BPB-208ENST00000561271 COG2Q14746 738 aa20.55■□□□□ 0.88
CDC42BPB-208ENST00000561271 CCL14Q16627 93 aa20.55■□□□□ 0.88
CDC42BPB-208ENST00000561271 B4GALNT3Q6L9W6 998 aa20.55■□□□□ 0.88
CDC42BPB-208ENST00000561271 SAMD1Q6SPF0 538 aaPredicted RBP20.55■□□□□ 0.88
CDC42BPB-208ENST00000561271 USP6NLQ92738 828 aa20.55■□□□□ 0.88
CDC42BPB-208ENST00000561271 APBA2Q99767 749 aa20.55■□□□□ 0.88
CDC42BPB-208ENST00000561271 MKNK2Q9HBH9 465 aa20.55■□□□□ 0.88
CDC42BPB-208ENST00000561271 TRIOBPQ9H2D6 2365 aa20.54■□□□□ 0.88
CDC42BPB-208ENST00000561271 PATL2C9JE40 543 aaKnown RBP20.54■□□□□ 0.88
CDC42BPB-208ENST00000561271 WDR46O15213 610 aaKnown RBP20.54■□□□□ 0.88
CDC42BPB-208ENST00000561271 PRDM1O75626 825 aa20.54■□□□□ 0.88
CDC42BPB-208ENST00000561271 ZKSCAN1P17029 563 aaPredicted RBP20.54■□□□□ 0.88
CDC42BPB-208ENST00000561271 UBE2Q1Q7Z7E8 422 aa20.54■□□□□ 0.88
CDC42BPB-208ENST00000561271 SMC5Q8IY18 1101 aa20.54■□□□□ 0.88
CDC42BPB-208ENST00000561271 ATG4CQ96DT6 458 aa20.54■□□□□ 0.88
CDC42BPB-208ENST00000561271 RAD21O60216 631 aa20.53■□□□□ 0.88
CDC42BPB-208ENST00000561271 XRCC5P13010 732 aaKnown RBP20.53■□□□□ 0.88
CDC42BPB-208ENST00000561271 PRKAR2AP13861 404 aaKnown RBP20.53■□□□□ 0.88
CDC42BPB-208ENST00000561271 EVI5LQ96CN4 794 aa20.53■□□□□ 0.88
CDC42BPB-208ENST00000561271 NACAP1Q9BZK3 213 aa20.53■□□□□ 0.88
CDC42BPB-208ENST00000561271 NAPBQ9H115 298 aa20.53■□□□□ 0.88
CDC42BPB-208ENST00000561271 GOPCQ9HD26 462 aa20.53■□□□□ 0.88
CDC42BPB-208ENST00000561271 RPTORQ8N122 1335 aa20.53■□□□□ 0.88
CDC42BPB-208ENST00000561271 FOXP2O15409 715 aa20.52■□□□□ 0.88
CDC42BPB-208ENST00000561271 IGHDP01880 384 aa20.52■□□□□ 0.88
CDC42BPB-208ENST00000561271 DSG3P32926 999 aa20.52■□□□□ 0.88
CDC42BPB-208ENST00000561271 MAP2K5Q13163 448 aa20.52■□□□□ 0.88
CDC42BPB-208ENST00000561271 MOV10L1Q9BXT6 1211 aaKnown RBP20.52■□□□□ 0.88
CDC42BPB-208ENST00000561271 SPATC1LQ9H0A9 340 aa20.52■□□□□ 0.88
CDC42BPB-208ENST00000561271 CRISPLD2Q9H0B8 497 aa20.52■□□□□ 0.88
CDC42BPB-208ENST00000561271 RWDD1Q9H446 243 aaPredicted RBP20.52■□□□□ 0.88
CDC42BPB-208ENST00000561271 HMX1Q9NP08 348 aaPredicted RBP20.52■□□□□ 0.88
CDC42BPB-208ENST00000561271 FBXO28Q9NVF7 368 aa20.52■□□□□ 0.88
CDC42BPB-208ENST00000561271 HOXC10Q9NYD6 342 aa20.52■□□□□ 0.88
CDC42BPB-208ENST00000561271 IVNS1ABPQ9Y6Y0 642 aa20.52■□□□□ 0.88
CDC42BPB-208ENST00000561271 MYH6P13533 1939 aa20.51■□□□□ 0.87
CDC42BPB-208ENST00000561271 PLIN4Q96Q06 1357 aa20.51■□□□□ 0.87
CDC42BPB-208ENST00000561271 TFRCP02786 760 aaKnown RBP20.51■□□□□ 0.87
CDC42BPB-208ENST00000561271 PTPREP23469 700 aa20.51■□□□□ 0.87
CDC42BPB-208ENST00000561271 GRB14Q14449 540 aa20.51■□□□□ 0.87
CDC42BPB-208ENST00000561271 PLS1Q14651 629 aa20.51■□□□□ 0.87
CDC42BPB-208ENST00000561271 MAP3K21Q5TCX8 1036 aa20.51■□□□□ 0.87
CDC42BPB-208ENST00000561271 SLC15A5A6NIM6 579 aa20.5■□□□□ 0.87
CDC42BPB-208ENST00000561271 PPARAQ07869 468 aa20.5■□□□□ 0.87
CDC42BPB-208ENST00000561271 FAM83BQ5T0W9 1011 aa20.5■□□□□ 0.87
CDC42BPB-208ENST00000561271 TRMT44Q8IYL2 757 aaKnown RBP20.5■□□□□ 0.87
CDC42BPB-208ENST00000561271 MB21D1Q8N884 522 aa20.5■□□□□ 0.87
CDC42BPB-208ENST00000561271 NUP88Q99567 741 aaPredicted RBP20.5■□□□□ 0.87
CDC42BPB-208ENST00000561271 SUPT16HQ9Y5B9 1047 aaKnown RBP20.5■□□□□ 0.87
CDC42BPB-208ENST00000561271 IGKV6D-41A0A0C4DH26 115 aa20.49■□□□□ 0.87
CDC42BPB-208ENST00000561271 A0A0D9SFI3 127 aa20.49■□□□□ 0.87
Retrieved 100 of 20,778 RNA–protein pairs in 17.2 ms