RNA–Protein interactions for RNA: ENST00000560514.1

TSPAN3-208, Transcript of tetraspanin 3, humanhuman

TSL 2

Gene TSPAN3, Length 638 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TSPAN3-208ENST00000560514 SH3RF1Q7Z6J0 888 aa21.71■■□□□ 1.07
TSPAN3-208ENST00000560514 TRMT2AQ8IZ69 625 aaKnown RBP21.71■■□□□ 1.07
TSPAN3-208ENST00000560514 SHCBP1Q8NEM2 672 aa21.71■■□□□ 1.07
TSPAN3-208ENST00000560514 ZNF512BQ96KM6 892 aaPredicted RBP21.71■■□□□ 1.07
TSPAN3-208ENST00000560514 CDH23Q9H251 3354 aa21.71■■□□□ 1.07
TSPAN3-208ENST00000560514 ERCC3P19447 782 aa21.7■■□□□ 1.06
TSPAN3-208ENST00000560514 RARSP54136 660 aaKnown RBP21.7■■□□□ 1.06
TSPAN3-208ENST00000560514 PLS1Q14651 629 aa21.7■■□□□ 1.06
TSPAN3-208ENST00000560514 LRRC41Q15345 812 aa21.7■■□□□ 1.06
TSPAN3-208ENST00000560514 C1orf53Q5VUE5 145 aa21.7■■□□□ 1.06
TSPAN3-208ENST00000560514 SPATC1LQ9H0A9 340 aa21.7■■□□□ 1.06
TSPAN3-208ENST00000560514 TRIM43BA6NCK2 446 aa21.69■■□□□ 1.06
TSPAN3-208ENST00000560514 MPHOSPH10O00566 681 aaKnown RBP21.69■■□□□ 1.06
TSPAN3-208ENST00000560514 IGHA2P01877 340 aa21.69■■□□□ 1.06
TSPAN3-208ENST00000560514 POLR3DP05423 398 aaPredicted RBP21.69■■□□□ 1.06
TSPAN3-208ENST00000560514 TLE2Q04725 743 aa21.69■■□□□ 1.06
TSPAN3-208ENST00000560514 PRAMEF19Q5SWL8 479 aa21.69■■□□□ 1.06
TSPAN3-208ENST00000560514 NCAPG2Q86XI2 1143 aa21.69■■□□□ 1.06
TSPAN3-208ENST00000560514 MAGEB6Q8N7X4 407 aa21.69■■□□□ 1.06
TSPAN3-208ENST00000560514 TRIM43Q96BQ3 446 aaPredicted RBP21.69■■□□□ 1.06
TSPAN3-208ENST00000560514 CLTBP09497 229 aa21.68■■□□□ 1.06
TSPAN3-208ENST00000560514 RAG1P15918 1043 aa21.68■■□□□ 1.06
TSPAN3-208ENST00000560514 FAM47AQ5JRC9 791 aa21.68■■□□□ 1.06
TSPAN3-208ENST00000560514 TJAP1Q5JTD0 557 aa21.68■■□□□ 1.06
TSPAN3-208ENST00000560514 MB21D1Q8N884 522 aa21.68■■□□□ 1.06
TSPAN3-208ENST00000560514 MROH8Q9H579 483 aa21.68■■□□□ 1.06
TSPAN3-208ENST00000560514 SPTBN5Q9NRC6 3674 aaKnown RBP21.68■■□□□ 1.06
TSPAN3-208ENST00000560514 COBLO75128 1261 aa21.67■■□□□ 1.06
TSPAN3-208ENST00000560514 RARBP10826 455 aa21.67■■□□□ 1.06
TSPAN3-208ENST00000560514 MAP3K12Q12852 859 aa21.67■■□□□ 1.06
TSPAN3-208ENST00000560514 SEPT2Q15019 361 aa21.67■■□□□ 1.06
TSPAN3-208ENST00000560514 RNF180Q86T96 592 aa21.67■■□□□ 1.06
TSPAN3-208ENST00000560514 XPNPEP3Q9NQH7 507 aa21.67■■□□□ 1.06
TSPAN3-208ENST00000560514 SURF6O75683 361 aaKnown RBP21.66■■□□□ 1.06
TSPAN3-208ENST00000560514 SHMT1P34896 483 aa21.66■■□□□ 1.06
TSPAN3-208ENST00000560514 ABRAQ8N0Z2 381 aa21.66■■□□□ 1.06
TSPAN3-208ENST00000560514 PHF24Q9UPV7 400 aa21.66■■□□□ 1.06
TSPAN3-208ENST00000560514 SMCHD1A6NHR9 2005 aa21.65■■□□□ 1.06
TSPAN3-208ENST00000560514 HSFX4A0A1B0GTS1 333 aaPredicted RBP21.65■■□□□ 1.06
TSPAN3-208ENST00000560514 HSFX3A0A1B0GWH4 333 aaPredicted RBP21.65■■□□□ 1.06
TSPAN3-208ENST00000560514 TNFRSF10AO00220 468 aa21.65■■□□□ 1.06
TSPAN3-208ENST00000560514 FCER1AP12319 257 aa21.65■■□□□ 1.06
TSPAN3-208ENST00000560514 GUCY1A2P33402 732 aa21.65■■□□□ 1.06
TSPAN3-208ENST00000560514 PLCD1P51178 756 aa21.65■■□□□ 1.06
TSPAN3-208ENST00000560514 FPGSQ05932 587 aa21.65■■□□□ 1.06
TSPAN3-208ENST00000560514 TMED8Q6PL24 325 aaPredicted RBP21.65■■□□□ 1.06
TSPAN3-208ENST00000560514 SAMD1Q6SPF0 538 aaPredicted RBP21.65■■□□□ 1.06
TSPAN3-208ENST00000560514 FRAT1Q92837 279 aaPredicted RBP21.65■■□□□ 1.06
TSPAN3-208ENST00000560514 MAML3Q96JK9 1138 aa21.65■■□□□ 1.06
TSPAN3-208ENST00000560514 ZNFX1Q9P2E3 1918 aaKnown RBP21.65■■□□□ 1.06
TSPAN3-208ENST00000560514 TTC28Q96AY4 2481 aa21.64■■□□□ 1.05
TSPAN3-208ENST00000560514 PQBP1O60828 265 aaKnown RBP21.64■■□□□ 1.05
TSPAN3-208ENST00000560514 FLOT1O75955 427 aa21.64■■□□□ 1.05
TSPAN3-208ENST00000560514 COL9A1P20849 921 aa21.64■■□□□ 1.05
TSPAN3-208ENST00000560514 TMEM39AQ9NV64 488 aa21.64■■□□□ 1.05
TSPAN3-208ENST00000560514 TRIM27P14373 513 aa21.63■■□□□ 1.05
TSPAN3-208ENST00000560514 DNAJB2P25686 324 aa21.63■■□□□ 1.05
TSPAN3-208ENST00000560514 GRIN2CQ14957 1233 aa21.63■■□□□ 1.05
TSPAN3-208ENST00000560514 CLUAP1Q96AJ1 413 aa21.63■■□□□ 1.05
TSPAN3-208ENST00000560514 CCDC8Q9H0W5 538 aaPredicted RBP21.63■■□□□ 1.05
TSPAN3-208ENST00000560514 NRBP1Q9UHY1 535 aa21.63■■□□□ 1.05
TSPAN3-208ENST00000560514 DBNLQ9UJU6 430 aaKnown RBP21.63■■□□□ 1.05
TSPAN3-208ENST00000560514 NAV1Q8NEY1 1877 aa21.62■■□□□ 1.05
TSPAN3-208ENST00000560514 A0A1W2PRG0 241 aa21.62■■□□□ 1.05
TSPAN3-208ENST00000560514 KIAA0355O15063 1070 aa21.62■■□□□ 1.05
TSPAN3-208ENST00000560514 SLC25A27O95847 323 aa21.62■■□□□ 1.05
TSPAN3-208ENST00000560514 PGK1P00558 417 aa21.62■■□□□ 1.05
TSPAN3-208ENST00000560514 ITGB8P26012 769 aa21.62■■□□□ 1.05
TSPAN3-208ENST00000560514 DSG3P32926 999 aa21.62■■□□□ 1.05
TSPAN3-208ENST00000560514 POLA2Q14181 598 aa21.62■■□□□ 1.05
TSPAN3-208ENST00000560514 ZNF576Q9H609 170 aa21.62■■□□□ 1.05
TSPAN3-208ENST00000560514 SH2D4AQ9H788 454 aa21.62■■□□□ 1.05
TSPAN3-208ENST00000560514 MCM9Q9NXL9 1143 aa21.62■■□□□ 1.05
TSPAN3-208ENST00000560514 A0A0G2JMZ2 1700 aa21.62■■□□□ 1.05
TSPAN3-208ENST00000560514 MAGEB6P1A0A0J9YX57 407 aa21.61■■□□□ 1.05
TSPAN3-208ENST00000560514 DCDC2CA8MYV0 355 aa21.61■■□□□ 1.05
TSPAN3-208ENST00000560514 EPHB4P54760 987 aa21.61■■□□□ 1.05
TSPAN3-208ENST00000560514 TMEM179Q6ZVK1 233 aa21.61■■□□□ 1.05
TSPAN3-208ENST00000560514 SSH3Q8TE77 659 aa21.61■■□□□ 1.05
TSPAN3-208ENST00000560514 GAS2L1Q99501 681 aaPredicted RBP21.61■■□□□ 1.05
TSPAN3-208ENST00000560514 MMP19Q99542 508 aa21.61■■□□□ 1.05
TSPAN3-208ENST00000560514 CRNKL1Q9BZJ0 848 aaKnown RBP21.61■■□□□ 1.05
TSPAN3-208ENST00000560514 ARHGEF10LQ9HCE6 1279 aa21.61■■□□□ 1.05
TSPAN3-208ENST00000560514 TLR7Q9NYK1 1049 aaKnown RBP21.61■■□□□ 1.05
TSPAN3-208ENST00000560514 A0A1W2PQ45 241 aaPredicted RBP21.6■■□□□ 1.05
TSPAN3-208ENST00000560514 A0A1W2PQY0 241 aa21.6■■□□□ 1.05
TSPAN3-208ENST00000560514 ATP8B2P98198 1209 aa21.6■■□□□ 1.05
TSPAN3-208ENST00000560514 CCDC174Q6PII3 467 aa21.6■■□□□ 1.05
TSPAN3-208ENST00000560514 USP38Q8NB14 1042 aa21.6■■□□□ 1.05
TSPAN3-208ENST00000560514 TIFAQ96CG3 184 aa21.6■■□□□ 1.05
TSPAN3-208ENST00000560514 ATG4CQ96DT6 458 aa21.6■■□□□ 1.05
TSPAN3-208ENST00000560514 MYH8P13535 1937 aa21.6■■□□□ 1.05
TSPAN3-208ENST00000560514 BCAR3O75815 825 aa21.59■■□□□ 1.05
TSPAN3-208ENST00000560514 AKR1A1P14550 325 aa21.59■■□□□ 1.05
TSPAN3-208ENST00000560514 GABPAQ06546 454 aa21.59■■□□□ 1.05
TSPAN3-208ENST00000560514 KCTD2Q14681 263 aa21.59■■□□□ 1.05
TSPAN3-208ENST00000560514 SPICE1Q8N0Z3 855 aa21.59■■□□□ 1.05
TSPAN3-208ENST00000560514 SLC44A5Q8NCS7 719 aa21.59■■□□□ 1.05
TSPAN3-208ENST00000560514 NUP133Q8WUM0 1156 aa21.59■■□□□ 1.05
TSPAN3-208ENST00000560514 PPM1EQ8WY54 764 aa21.59■■□□□ 1.05
Retrieved 100 of 20,778 RNA–protein pairs in 31.5 ms