RNA–Protein interactions for RNA: ENST00000560447.1

RTF1-206, Transcript of RTF1 homolog, Paf1/RNA polymerase II complex component, humanhuman

TSL 3

Gene RTF1, Length 551 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTF1-206ENST00000560447 GJB4Q9NTQ9 266 aa11.14□□□□□ -0.63
RTF1-206ENST00000560447 CLIP2Q9UDT6 1046 aa11.14□□□□□ -0.63
RTF1-206ENST00000560447 MKRN1Q9UHC7 482 aaKnown RBP11.14□□□□□ -0.63
RTF1-206ENST00000560447 DACH1Q9UI36 760 aa11.14□□□□□ -0.63
RTF1-206ENST00000560447 KCNH3Q9ULD8 1083 aa11.14□□□□□ -0.63
RTF1-206ENST00000560447 SUGT1Q9Y2Z0 365 aa11.14□□□□□ -0.63
RTF1-206ENST00000560447 CNTNAP5Q8WYK1 1306 aa11.13□□□□□ -0.63
RTF1-206ENST00000560447 C10orf71Q711Q0 1435 aa11.13□□□□□ -0.63
RTF1-206ENST00000560447 KLRG2A4D1S0 409 aaPredicted RBP11.13□□□□□ -0.63
RTF1-206ENST00000560447 TRIM75PA6NK02 468 aa11.13□□□□□ -0.63
RTF1-206ENST00000560447 DYNC1I1O14576 645 aa11.13□□□□□ -0.63
RTF1-206ENST00000560447 CBFA2T2O43439 604 aa11.13□□□□□ -0.63
RTF1-206ENST00000560447 PPFIA3O75145 1194 aa11.13□□□□□ -0.63
RTF1-206ENST00000560447 MARCKSP29966 332 aaPredicted RBP11.13□□□□□ -0.63
RTF1-206ENST00000560447 PRDX5P30044 214 aa11.13□□□□□ -0.63
RTF1-206ENST00000560447 KCNJ6P48051 423 aa11.13□□□□□ -0.63
RTF1-206ENST00000560447 PKN1Q16512 942 aa11.13□□□□□ -0.63
RTF1-206ENST00000560447 NT5DC1Q5TFE4 455 aa11.13□□□□□ -0.63
RTF1-206ENST00000560447 C12orf60Q5U649 245 aa11.13□□□□□ -0.63
RTF1-206ENST00000560447 GALNT17Q6IS24 598 aa11.13□□□□□ -0.63
RTF1-206ENST00000560447 PRR5LQ6MZQ0 368 aa11.13□□□□□ -0.63
RTF1-206ENST00000560447 OLFM4Q6UX06 510 aa11.13□□□□□ -0.63
RTF1-206ENST00000560447 PTF1AQ7RTS3 328 aa11.13□□□□□ -0.63
RTF1-206ENST00000560447 ZNF710Q8N1W2 664 aa11.13□□□□□ -0.63
RTF1-206ENST00000560447 LZTS2Q9BRK4 669 aa11.13□□□□□ -0.63
RTF1-206ENST00000560447 ZKSCAN3Q9BRR0 538 aa11.13□□□□□ -0.63
RTF1-206ENST00000560447 OSBPL5Q9H0X9 879 aaPredicted RBP11.13□□□□□ -0.63
RTF1-206ENST00000560447 KCNF1Q9H3M0 494 aa11.13□□□□□ -0.63
RTF1-206ENST00000560447 AATFQ9NY61 560 aaKnown RBP eCLIP11.13□□□□□ -0.63
RTF1-206ENST00000560447 TFCP2L1Q9NZI6 479 aa11.13□□□□□ -0.63
RTF1-206ENST00000560447 ANKIB1Q9P2G1 1089 aa11.13□□□□□ -0.63
RTF1-206ENST00000560447 FBXO2Q9UK22 296 aaPredicted RBP11.13□□□□□ -0.63
RTF1-206ENST00000560447 MYH1P12882 1939 aa11.13□□□□□ -0.63
RTF1-206ENST00000560447 FAM205AQ6ZU69 1335 aa11.12□□□□□ -0.63
RTF1-206ENST00000560447 BRWD3Q6RI45 1802 aa11.12□□□□□ -0.63
RTF1-206ENST00000560447 FAM205CA6NFA0 338 aa11.12□□□□□ -0.63
RTF1-206ENST00000560447 NRDCO43847 1150 aa11.12□□□□□ -0.63
RTF1-206ENST00000560447 PPP1R37O75864 691 aa11.12□□□□□ -0.63
RTF1-206ENST00000560447 KLRK1P26718 216 aa11.12□□□□□ -0.63
RTF1-206ENST00000560447 SMARCA1P28370 1054 aa11.12□□□□□ -0.63
RTF1-206ENST00000560447 GUCY1A2P33402 732 aa11.12□□□□□ -0.63
RTF1-206ENST00000560447 TOB1P50616 345 aaPredicted RBP11.12□□□□□ -0.63
RTF1-206ENST00000560447 CHAF1AQ13111 956 aaPredicted RBP11.12□□□□□ -0.63
RTF1-206ENST00000560447 SEMA3FQ13275 785 aa11.12□□□□□ -0.63
RTF1-206ENST00000560447 CCDC186Q7Z3E2 898 aa11.12□□□□□ -0.63
RTF1-206ENST00000560447 SEPT12Q8IYM1 358 aa11.12□□□□□ -0.63
RTF1-206ENST00000560447 STK11IPQ8N1F8 1099 aa11.12□□□□□ -0.63
RTF1-206ENST00000560447 AOPEPQ8N6M6 819 aa11.12□□□□□ -0.63
RTF1-206ENST00000560447 SPC24Q8NBT2 197 aa11.12□□□□□ -0.63
RTF1-206ENST00000560447 CCDC150Q8NCX0 1101 aa11.12□□□□□ -0.63
RTF1-206ENST00000560447 CNNM3Q8NE01 707 aa11.12□□□□□ -0.63
RTF1-206ENST00000560447 RGPD3A6NKT7 1758 aaPredicted RBP11.12□□□□□ -0.63
RTF1-206ENST00000560447 RGPD4Q7Z3J3 1758 aa11.12□□□□□ -0.63
RTF1-206ENST00000560447 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP11.11□□□□□ -0.63
RTF1-206ENST00000560447 TSPY2A6NKD2 308 aa11.11□□□□□ -0.63
RTF1-206ENST00000560447 TUBB4AP04350 444 aa11.11□□□□□ -0.63
RTF1-206ENST00000560447 SCG2P13521 617 aa11.11□□□□□ -0.63
RTF1-206ENST00000560447 GYS1P13807 737 aa11.11□□□□□ -0.63
RTF1-206ENST00000560447 PTGS1P23219 599 aa11.11□□□□□ -0.63
RTF1-206ENST00000560447 GTF2F1P35269 517 aaKnown RBP eCLIP11.11□□□□□ -0.63
RTF1-206ENST00000560447 USP5P45974 858 aa11.11□□□□□ -0.63
RTF1-206ENST00000560447 KCNQ4P56696 695 aa11.11□□□□□ -0.63
RTF1-206ENST00000560447 MYL5Q02045 173 aa11.11□□□□□ -0.63
RTF1-206ENST00000560447 PFKFB3Q16875 520 aaPredicted RBP11.11□□□□□ -0.63
RTF1-206ENST00000560447 GPR153Q6NV75 609 aa11.11□□□□□ -0.63
RTF1-206ENST00000560447 MTERF4Q7Z6M4 381 aaKnown RBP11.11□□□□□ -0.63
RTF1-206ENST00000560447 MLKLQ8NB16 471 aa11.11□□□□□ -0.63
RTF1-206ENST00000560447 MAP7D2Q96T17 732 aa11.11□□□□□ -0.63
RTF1-206ENST00000560447 KAT14Q9H8E8 782 aa11.11□□□□□ -0.63
RTF1-206ENST00000560447 MCM9Q9NXL9 1143 aa11.11□□□□□ -0.63
RTF1-206ENST00000560447 GGA1Q9UJY5 639 aa11.11□□□□□ -0.63
RTF1-206ENST00000560447 KCNJ14Q9UNX9 436 aa11.11□□□□□ -0.63
RTF1-206ENST00000560447 R3HCC1Q9Y3T6 440 aaKnown RBP11.11□□□□□ -0.63
RTF1-206ENST00000560447 ANKRD31Q8N7Z5 1873 aa11.1□□□□□ -0.63
RTF1-206ENST00000560447 MYH8P13535 1937 aa11.1□□□□□ -0.63
RTF1-206ENST00000560447 GPR75-ASB3A0A0A6YYF3 556 aa11.1□□□□□ -0.63
RTF1-206ENST00000560447 KIF2AO00139 706 aaPredicted RBP11.1□□□□□ -0.63
RTF1-206ENST00000560447 RIMBP2O15034 1052 aa11.1□□□□□ -0.63
RTF1-206ENST00000560447 SERPINB2P05120 415 aa11.1□□□□□ -0.63
RTF1-206ENST00000560447 MDM2Q00987 491 aaPredicted RBP11.1□□□□□ -0.63
RTF1-206ENST00000560447 GRM4Q14833 912 aa11.1□□□□□ -0.63
RTF1-206ENST00000560447 DPCR1Q3MIW9 517 aa11.1□□□□□ -0.63
RTF1-206ENST00000560447 DNTTIP2Q5QJE6 756 aaKnown RBP11.1□□□□□ -0.63
RTF1-206ENST00000560447 ARL6IP4Q66PJ3 421 aaKnown RBP11.1□□□□□ -0.63
RTF1-206ENST00000560447 TXNRD3Q86VQ6 643 aa11.1□□□□□ -0.63
RTF1-206ENST00000560447 LRRC8AQ8IWT6 810 aa11.1□□□□□ -0.63
RTF1-206ENST00000560447 DAGLBQ8NCG7 672 aa11.1□□□□□ -0.63
RTF1-206ENST00000560447 CCDC148Q8NFR7 591 aa11.1□□□□□ -0.63
RTF1-206ENST00000560447 MYRIPQ8NFW9 859 aa11.1□□□□□ -0.63
RTF1-206ENST00000560447 TNFRSF25Q93038 417 aa11.1□□□□□ -0.63
RTF1-206ENST00000560447 CD209Q9NNX6 404 aa11.1□□□□□ -0.63
RTF1-206ENST00000560447 GAKO14976 1311 aa11.09□□□□□ -0.63
RTF1-206ENST00000560447 MYO3BQ8WXR4 1341 aa11.09□□□□□ -0.63
RTF1-206ENST00000560447 PLIN4Q96Q06 1357 aa11.09□□□□□ -0.63
RTF1-206ENST00000560447 WTIPA6NIX2 430 aaPredicted RBP11.09□□□□□ -0.63
RTF1-206ENST00000560447 SMC2O95347 1197 aa11.09□□□□□ -0.63
RTF1-206ENST00000560447 SARSP49591 514 aaKnown RBP11.09□□□□□ -0.63
RTF1-206ENST00000560447 ATP2C1P98194 919 aaPredicted RBP11.09□□□□□ -0.63
RTF1-206ENST00000560447 ORC2Q13416 577 aaPredicted RBP11.09□□□□□ -0.63
RTF1-206ENST00000560447 NCAPHQ15003 741 aa11.09□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 21.5 ms