RNA–Protein interactions for RNA: ENST00000559711.5

USP3-213, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 5 BASIC

Gene USP3, Length 1,693 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-213ENST00000559711 hCG_1642624A0A1W2PR95 340 aa14.65□□□□□ -0.06
USP3-213ENST00000559711 SCG2P13521 617 aa14.65□□□□□ -0.06
USP3-213ENST00000559711 SMARCA1P28370 1054 aa14.65□□□□□ -0.06
USP3-213ENST00000559711 MMP14P50281 582 aa14.65□□□□□ -0.06
USP3-213ENST00000559711 PPP4R3BQ5MIZ7 849 aa14.65□□□□□ -0.06
USP3-213ENST00000559711 CIAPIN1Q6FI81 312 aa14.65□□□□□ -0.06
USP3-213ENST00000559711 TATDN1Q6P1N9 297 aa14.65□□□□□ -0.06
USP3-213ENST00000559711 VPS54Q9P1Q0 977 aa14.65□□□□□ -0.06
USP3-213ENST00000559711 BCS1LQ9Y276 419 aa14.65□□□□□ -0.06
USP3-213ENST00000559711 SPTLC2O15270 562 aa14.64□□□□□ -0.07
USP3-213ENST00000559711 TTLL1O95922 423 aa14.64□□□□□ -0.07
USP3-213ENST00000559711 SLC39A14Q15043 492 aa14.64□□□□□ -0.07
USP3-213ENST00000559711 STK38Q15208 465 aa14.64□□□□□ -0.07
USP3-213ENST00000559711 SLC35G1Q2M3R5 365 aa14.64□□□□□ -0.07
USP3-213ENST00000559711 TPRNQ4KMQ1 711 aa14.64□□□□□ -0.07
USP3-213ENST00000559711 FKBP1CQ5VVH2 108 aa14.64□□□□□ -0.07
USP3-213ENST00000559711 ADALQ6DHV7 355 aa14.64□□□□□ -0.07
USP3-213ENST00000559711 ZBED3Q96IU2 234 aaPredicted RBP14.64□□□□□ -0.07
USP3-213ENST00000559711 GRPEL1Q9HAV7 217 aa14.64□□□□□ -0.07
USP3-213ENST00000559711 TMOD2Q9NZR1 351 aa14.64□□□□□ -0.07
USP3-213ENST00000559711 ZNF70Q9UC06 446 aaPredicted RBP14.64□□□□□ -0.07
USP3-213ENST00000559711 PCDHA7Q9UN72 937 aa14.64□□□□□ -0.07
USP3-213ENST00000559711 A0A1W2PQ27 194 aa14.63□□□□□ -0.07
USP3-213ENST00000559711 A0A1W2PQ64 194 aa14.63□□□□□ -0.07
USP3-213ENST00000559711 A0A1W2PQD8 194 aa14.63□□□□□ -0.07
USP3-213ENST00000559711 PARP1P09874 1014 aaKnown RBP14.63□□□□□ -0.07
USP3-213ENST00000559711 SNHG28P0DPA3 235 aa14.63□□□□□ -0.07
USP3-213ENST00000559711 XRCC6P12956 609 aaKnown RBP eCLIP14.63□□□□□ -0.07
USP3-213ENST00000559711 ME1P48163 572 aa14.63□□□□□ -0.07
USP3-213ENST00000559711 TNIP1Q15025 636 aa14.63□□□□□ -0.07
USP3-213ENST00000559711 NPY5RQ15761 445 aa14.63□□□□□ -0.07
USP3-213ENST00000559711 SPDYE2Q495Y8 402 aa14.63□□□□□ -0.07
USP3-213ENST00000559711 ZSCAN29Q8IWY8 852 aaPredicted RBP14.63□□□□□ -0.07
USP3-213ENST00000559711 FAM177A1Q8N128 213 aaPredicted RBP14.63□□□□□ -0.07
USP3-213ENST00000559711 BICD2Q8TD16 824 aa14.63□□□□□ -0.07
USP3-213ENST00000559711 SPZ1Q9BXG8 430 aa14.63□□□□□ -0.07
USP3-213ENST00000559711 SH3GLB2Q9NR46 395 aa14.63□□□□□ -0.07
USP3-213ENST00000559711 DDX19AQ9NUU7 478 aaKnown RBP14.63□□□□□ -0.07
USP3-213ENST00000559711 PSME4Q14997 1843 aa14.63□□□□□ -0.07
USP3-213ENST00000559711 KLRF2D3W0D1 207 aa14.62□□□□□ -0.07
USP3-213ENST00000559711 CYTH3O43739 400 aa14.62□□□□□ -0.07
USP3-213ENST00000559711 SLURP2P0DP57 97 aa14.62□□□□□ -0.07
USP3-213ENST00000559711 KRT2P35908 639 aa14.62□□□□□ -0.07
USP3-213ENST00000559711 NR5A1Q13285 461 aa14.62□□□□□ -0.07
USP3-213ENST00000559711 PTPAQ15257 358 aa14.62□□□□□ -0.07
USP3-213ENST00000559711 SF3A1Q15459 793 aaKnown RBP14.62□□□□□ -0.07
USP3-213ENST00000559711 CERKLQ49MI3 558 aaPredicted RBP14.62□□□□□ -0.07
USP3-213ENST00000559711 RILPL1Q5EBL4 403 aa14.62□□□□□ -0.07
USP3-213ENST00000559711 OXER1Q8TDS5 423 aa14.62□□□□□ -0.07
USP3-213ENST00000559711 EIF4ENIF1Q9NRA8 985 aaKnown RBP14.62□□□□□ -0.07
USP3-213ENST00000559711 DACT1Q9NYF0 836 aa14.62□□□□□ -0.07
USP3-213ENST00000559711 CLIP2Q9UDT6 1046 aa14.62□□□□□ -0.07
USP3-213ENST00000559711 PPP6R2O75170 966 aa14.61□□□□□ -0.07
USP3-213ENST00000559711 PDHBP11177 359 aa14.61□□□□□ -0.07
USP3-213ENST00000559711 VEGFAP15692 232 aaPredicted RBP14.61□□□□□ -0.07
USP3-213ENST00000559711 TOB1P50616 345 aaPredicted RBP14.61□□□□□ -0.07
USP3-213ENST00000559711 USP17L2Q6R6M4 530 aa14.61□□□□□ -0.07
USP3-213ENST00000559711 CCAR1Q8IX12 1150 aaKnown RBP14.61□□□□□ -0.07
USP3-213ENST00000559711 FAM151AQ8WW52 585 aa14.61□□□□□ -0.07
USP3-213ENST00000559711 MKL1Q969V6 931 aa14.61□□□□□ -0.07
USP3-213ENST00000559711 BRMS1Q9HCU9 246 aa14.61□□□□□ -0.07
USP3-213ENST00000559711 USP17L5A8MUK1 530 aa14.61□□□□□ -0.07
USP3-213ENST00000559711 NR1I2O75469 434 aa14.61□□□□□ -0.07
USP3-213ENST00000559711 RPS12P25398 132 aaKnown RBP14.61□□□□□ -0.07
USP3-213ENST00000559711 ASPRV1Q53RT3 343 aa14.61□□□□□ -0.07
USP3-213ENST00000559711 AXDND1Q5T1B0 1012 aaPredicted RBP14.61□□□□□ -0.07
USP3-213ENST00000559711 ENGASEQ8NFI3 743 aa14.61□□□□□ -0.07
USP3-213ENST00000559711 TNFRSF25Q93038 417 aa14.61□□□□□ -0.07
USP3-213ENST00000559711 TRIM34Q9BYJ4 488 aa14.61□□□□□ -0.07
USP3-213ENST00000559711 NYAP2Q9P242 653 aa14.61□□□□□ -0.07
USP3-213ENST00000559711 HERC5Q9UII4 1024 aaKnown RBP14.61□□□□□ -0.07
USP3-213ENST00000559711 BRCA1P38398 1863 aaKnown RBP14.61□□□□□ -0.07
USP3-213ENST00000559711 ECM29Q5VYK3 1845 aa14.6□□□□□ -0.07
USP3-213ENST00000559711 CLRN2A0PK11 232 aa14.6□□□□□ -0.07
USP3-213ENST00000559711 TCP10L2B9ZVM9 353 aa14.6□□□□□ -0.07
USP3-213ENST00000559711 MPHOSPH10O00566 681 aaKnown RBP14.6□□□□□ -0.07
USP3-213ENST00000559711 GOLGA8HP0CJ92 632 aa14.6□□□□□ -0.07
USP3-213ENST00000559711 CALML3P27482 149 aa14.6□□□□□ -0.07
USP3-213ENST00000559711 ZNF280AP59817 542 aaPredicted RBP14.6□□□□□ -0.07
USP3-213ENST00000559711 FAM83AQ86UY5 434 aa14.6□□□□□ -0.07
USP3-213ENST00000559711 JMYQ8N9B5 988 aa14.6□□□□□ -0.07
USP3-213ENST00000559711 NLGN2Q8NFZ4 835 aa14.6□□□□□ -0.07
USP3-213ENST00000559711 CSRNP1Q96S65 589 aa14.6□□□□□ -0.07
USP3-213ENST00000559711 NUP62CLQ9H1M0 184 aa14.6□□□□□ -0.07
USP3-213ENST00000559711 GOLPH3LQ9H4A5 285 aa14.6□□□□□ -0.07
USP3-213ENST00000559711 CLSTN2Q9H4D0 955 aa14.6□□□□□ -0.07
USP3-213ENST00000559711 RIOX1Q9H6W3 641 aa14.6□□□□□ -0.07
USP3-213ENST00000559711 KANSL2Q9H9L4 492 aa14.6□□□□□ -0.07
USP3-213ENST00000559711 MTMR7Q9Y216 660 aa14.6□□□□□ -0.07
USP3-213ENST00000559711 MORC2Q9Y6X9 1032 aaPredicted RBP14.6□□□□□ -0.07
USP3-213ENST00000559711 CNTNAP1P78357 1384 aa14.6□□□□□ -0.07
USP3-213ENST00000559711 FER1L6Q2WGJ9 1857 aa14.6□□□□□ -0.07
USP3-213ENST00000559711 FAM196BA6NMK8 535 aa14.59□□□□□ -0.07
USP3-213ENST00000559711 FZD9O00144 591 aa14.59□□□□□ -0.07
USP3-213ENST00000559711 NLRP5P59047 1200 aa14.59□□□□□ -0.07
USP3-213ENST00000559711 SNW1Q13573 536 aaKnown RBP14.59□□□□□ -0.07
USP3-213ENST00000559711 RBM43Q6ZSC3 357 aaKnown RBP14.59□□□□□ -0.07
USP3-213ENST00000559711 TMEM179Q6ZVK1 233 aa14.59□□□□□ -0.07
USP3-213ENST00000559711 RASGRP2Q7LDG7 609 aa14.59□□□□□ -0.07
USP3-213ENST00000559711 CLEC10AQ8IUN9 316 aa14.59□□□□□ -0.07
Retrieved 100 of 20,778 RNA–protein pairs in 97.9 ms