RNA–Protein interactions for RNA: ENST00000557455.1

CCDC88C-213, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 3

Gene CCDC88C, Length 811 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-213ENST00000557455 SLC44A5Q8NCS7 719 aa13.35□□□□□ -0.27
CCDC88C-213ENST00000557455 DYNLL2Q96FJ2 89 aa13.35□□□□□ -0.27
CCDC88C-213ENST00000557455 DDRGK1Q96HY6 314 aa13.35□□□□□ -0.27
CCDC88C-213ENST00000557455 TANGO6Q9C0B7 1094 aa13.35□□□□□ -0.27
CCDC88C-213ENST00000557455 HOXC10Q9NYD6 342 aa13.35□□□□□ -0.27
CCDC88C-213ENST00000557455 SMARCA5O60264 1052 aaPredicted RBP13.34□□□□□ -0.27
CCDC88C-213ENST00000557455 COG2Q14746 738 aa13.34□□□□□ -0.27
CCDC88C-213ENST00000557455 UBE3CQ15386 1083 aa13.34□□□□□ -0.27
CCDC88C-213ENST00000557455 C20orf194Q5TEA3 1177 aa13.34□□□□□ -0.27
CCDC88C-213ENST00000557455 MFSD14CQ5VZR4 134 aa13.34□□□□□ -0.27
CCDC88C-213ENST00000557455 ARHGEF10LQ9HCE6 1279 aa13.34□□□□□ -0.27
CCDC88C-213ENST00000557455 STAP2Q9UGK3 403 aa13.34□□□□□ -0.27
CCDC88C-213ENST00000557455 SLC4A4Q9Y6R1 1079 aa13.34□□□□□ -0.27
CCDC88C-213ENST00000557455 PARP14Q460N5 1801 aa13.34□□□□□ -0.27
CCDC88C-213ENST00000557455 A0A0G2JMZ2 1700 aa13.33□□□□□ -0.27
CCDC88C-213ENST00000557455 A0A1W2PPC1 479 aa13.33□□□□□ -0.28
CCDC88C-213ENST00000557455 USP17L12C9JPN9 530 aa13.33□□□□□ -0.28
CCDC88C-213ENST00000557455 USP17L21D6R901 530 aa13.33□□□□□ -0.28
CCDC88C-213ENST00000557455 CHGBP05060 677 aa13.33□□□□□ -0.28
CCDC88C-213ENST00000557455 AKR1B1P15121 316 aa13.33□□□□□ -0.28
CCDC88C-213ENST00000557455 CDK8P49336 464 aa13.33□□□□□ -0.28
CCDC88C-213ENST00000557455 ATP2B2Q01814 1243 aa13.33□□□□□ -0.28
CCDC88C-213ENST00000557455 GRB14Q14449 540 aa13.33□□□□□ -0.28
CCDC88C-213ENST00000557455 C12orf60Q5U649 245 aa13.33□□□□□ -0.28
CCDC88C-213ENST00000557455 LHX8Q68G74 356 aa13.33□□□□□ -0.28
CCDC88C-213ENST00000557455 CCDC17Q96LX7 622 aa13.33□□□□□ -0.28
CCDC88C-213ENST00000557455 SH2D4AQ9H788 454 aa13.33□□□□□ -0.28
CCDC88C-213ENST00000557455 FLRT1Q9NZU1 646 aa13.33□□□□□ -0.28
CCDC88C-213ENST00000557455 ZNFX1Q9P2E3 1918 aaKnown RBP13.33□□□□□ -0.28
CCDC88C-213ENST00000557455 COL11A1P12107 1806 aaPredicted RBP13.32□□□□□ -0.28
CCDC88C-213ENST00000557455 ZNF236Q9UL36 1845 aa13.32□□□□□ -0.28
CCDC88C-213ENST00000557455 CYP2D7A0A087X1C5 515 aa13.32□□□□□ -0.28
CCDC88C-213ENST00000557455 HOXC6P09630 235 aa13.32□□□□□ -0.28
CCDC88C-213ENST00000557455 ICA1Q05084 483 aa13.32□□□□□ -0.28
CCDC88C-213ENST00000557455 CLEC10AQ8IUN9 316 aa13.32□□□□□ -0.28
CCDC88C-213ENST00000557455 LPAR1Q92633 364 aa13.32□□□□□ -0.28
CCDC88C-213ENST00000557455 MOV10L1Q9BXT6 1211 aaKnown RBP13.32□□□□□ -0.28
CCDC88C-213ENST00000557455 PUS7LQ9H0K6 701 aaKnown RBP13.32□□□□□ -0.28
CCDC88C-213ENST00000557455 ZMYND8Q9ULU4 1186 aaPredicted RBP13.32□□□□□ -0.28
CCDC88C-213ENST00000557455 TMX2Q9Y320 296 aa13.32□□□□□ -0.28
CCDC88C-213ENST00000557455 PFASO15067 1338 aa13.32□□□□□ -0.28
CCDC88C-213ENST00000557455 SMIM22K7EJ46 135 aa13.31□□□□□ -0.28
CCDC88C-213ENST00000557455 STRNO43815 780 aa13.31□□□□□ -0.28
CCDC88C-213ENST00000557455 FLOT1O75955 427 aa13.31□□□□□ -0.28
CCDC88C-213ENST00000557455 CNGA1P29973 690 aa13.31□□□□□ -0.28
CCDC88C-213ENST00000557455 DSG3P32926 999 aa13.31□□□□□ -0.28
CCDC88C-213ENST00000557455 KIAA1755Q5JYT7 1200 aa13.31□□□□□ -0.28
CCDC88C-213ENST00000557455 C16orf86Q6ZW13 317 aa13.31□□□□□ -0.28
CCDC88C-213ENST00000557455 DPP9Q86TI2 863 aa13.31□□□□□ -0.28
CCDC88C-213ENST00000557455 SIAH1Q8IUQ4 282 aa13.31□□□□□ -0.28
CCDC88C-213ENST00000557455 SPICE1Q8N0Z3 855 aa13.31□□□□□ -0.28
CCDC88C-213ENST00000557455 MB21D1Q8N884 522 aa13.31□□□□□ -0.28
CCDC88C-213ENST00000557455 NPLOC4Q8TAT6 608 aa13.31□□□□□ -0.28
CCDC88C-213ENST00000557455 SPATC1LQ9H0A9 340 aa13.31□□□□□ -0.28
CCDC88C-213ENST00000557455 VCPKMTQ9H867 229 aa13.31□□□□□ -0.28
CCDC88C-213ENST00000557455 ECHDC1Q9NTX5 307 aa13.31□□□□□ -0.28
CCDC88C-213ENST00000557455 COL6A1P12109 1028 aa13.3□□□□□ -0.28
CCDC88C-213ENST00000557455 SYN1P17600 705 aa13.3□□□□□ -0.28
CCDC88C-213ENST00000557455 ERCC3P19447 782 aa13.3□□□□□ -0.28
CCDC88C-213ENST00000557455 ADORA2AP29274 412 aa13.3□□□□□ -0.28
CCDC88C-213ENST00000557455 PLS1Q14651 629 aa13.3□□□□□ -0.28
CCDC88C-213ENST00000557455 CTR9Q6PD62 1173 aa13.3□□□□□ -0.28
CCDC88C-213ENST00000557455 SAMD1Q6SPF0 538 aaPredicted RBP13.3□□□□□ -0.28
CCDC88C-213ENST00000557455 SHCBP1Q8NEM2 672 aa13.3□□□□□ -0.28
CCDC88C-213ENST00000557455 GPATCH3Q96I76 525 aa13.3□□□□□ -0.28
CCDC88C-213ENST00000557455 GDF15Q99988 308 aa13.3□□□□□ -0.28
CCDC88C-213ENST00000557455 ARPP21Q9UBL0 812 aaPredicted RBP13.3□□□□□ -0.28
CCDC88C-213ENST00000557455 WDR46O15213 610 aaKnown RBP13.29□□□□□ -0.28
CCDC88C-213ENST00000557455 MSCO60682 206 aa13.29□□□□□ -0.28
CCDC88C-213ENST00000557455 EEF2P13639 858 aaKnown RBP13.29□□□□□ -0.28
CCDC88C-213ENST00000557455 CYP2C19P33261 490 aa13.29□□□□□ -0.28
CCDC88C-213ENST00000557455 BMP8BP34820 402 aa13.29□□□□□ -0.28
CCDC88C-213ENST00000557455 NCAPG2Q86XI2 1143 aa13.29□□□□□ -0.28
CCDC88C-213ENST00000557455 ATG4CQ96DT6 458 aa13.29□□□□□ -0.28
CCDC88C-213ENST00000557455 MROH8Q9H579 483 aa13.29□□□□□ -0.28
CCDC88C-213ENST00000557455 DCTPP1Q9H773 170 aa13.29□□□□□ -0.28
CCDC88C-213ENST00000557455 KANSL2Q9H9L4 492 aa13.29□□□□□ -0.28
CCDC88C-213ENST00000557455 SLC5A4Q9NY91 659 aa13.29□□□□□ -0.28
CCDC88C-213ENST00000557455 DDX20Q9UHI6 824 aaKnown RBP13.29□□□□□ -0.28
CCDC88C-213ENST00000557455 PLXNA1Q9UIW2 1896 aa13.28□□□□□ -0.28
CCDC88C-213ENST00000557455 OLFML2BQ68BL8 750 aa13.28□□□□□ -0.28
CCDC88C-213ENST00000557455 KBTBD3Q8NAB2 608 aa13.28□□□□□ -0.28
CCDC88C-213ENST00000557455 STRBPQ96SI9 672 aaKnown RBP13.28□□□□□ -0.28
CCDC88C-213ENST00000557455 GOPCQ9HD26 462 aa13.28□□□□□ -0.28
CCDC88C-213ENST00000557455 GREB1LQ9C091 1923 aaPredicted RBP13.28□□□□□ -0.28
CCDC88C-213ENST00000557455 MYH4Q9Y623 1939 aa13.28□□□□□ -0.28
CCDC88C-213ENST00000557455 LAMA3Q16787 3333 aa13.28□□□□□ -0.28
CCDC88C-213ENST00000557455 SOX1O00570 391 aaPredicted RBP13.27□□□□□ -0.29
CCDC88C-213ENST00000557455 RAD21O60216 631 aa13.27□□□□□ -0.29
CCDC88C-213ENST00000557455 CYBAP13498 195 aa13.27□□□□□ -0.29
CCDC88C-213ENST00000557455 MAGEA10P43363 369 aaPredicted RBP13.27□□□□□ -0.29
CCDC88C-213ENST00000557455 LRRC26Q2I0M4 334 aa13.27□□□□□ -0.29
CCDC88C-213ENST00000557455 TSHZ3Q63HK5 1081 aa13.27□□□□□ -0.29
CCDC88C-213ENST00000557455 GIMAP6Q6P9H5 292 aa13.27□□□□□ -0.29
CCDC88C-213ENST00000557455 ABRAQ8N0Z2 381 aa13.27□□□□□ -0.29
CCDC88C-213ENST00000557455 SENP6Q9GZR1 1112 aaPredicted RBP13.27□□□□□ -0.29
CCDC88C-213ENST00000557455 MKNK2Q9HBH9 465 aa13.27□□□□□ -0.29
CCDC88C-213ENST00000557455 DNAH12Q6ZR08 3092 aa13.27□□□□□ -0.29
CCDC88C-213ENST00000557455 GSG1L2A8MUP6 293 aa13.26□□□□□ -0.29
CCDC88C-213ENST00000557455 MINDY4BA8MYZ0 360 aa13.26□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 44.7 ms