RNA–Protein interactions for RNA: ENST00000557302.1

SHMT2-228, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 3

Gene SHMT2, Length 457 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-228ENST00000557302 USP17L17D6RBQ6 530 aa16.07■□□□□ 0.16
SHMT2-228ENST00000557302 USP17L19D6RCP7 530 aa16.07■□□□□ 0.16
SHMT2-228ENST00000557302 USP17L20D6RJB6 530 aa16.07■□□□□ 0.16
SHMT2-228ENST00000557302 TTLL1O95922 423 aa16.07■□□□□ 0.16
SHMT2-228ENST00000557302 KCNA4P22459 653 aa16.07■□□□□ 0.16
SHMT2-228ENST00000557302 SP3Q02447 781 aa16.07■□□□□ 0.16
SHMT2-228ENST00000557302 USP17L24Q0WX57 530 aa16.07■□□□□ 0.16
SHMT2-228ENST00000557302 MAP4K1Q92918 833 aa16.07■□□□□ 0.16
SHMT2-228ENST00000557302 RNF39Q9H2S5 420 aa16.07■□□□□ 0.16
SHMT2-228ENST00000557302 VCPKMTQ9H867 229 aa16.07■□□□□ 0.16
SHMT2-228ENST00000557302 GOPCQ9HD26 462 aa16.07■□□□□ 0.16
SHMT2-228ENST00000557302 ANO2Q9NQ90 1003 aa16.07■□□□□ 0.16
SHMT2-228ENST00000557302 CPA4Q9UI42 421 aa16.07■□□□□ 0.16
SHMT2-228ENST00000557302 NEDD4P46934 1319 aa16.07■□□□□ 0.16
SHMT2-228ENST00000557302 GREB1LQ9C091 1923 aaPredicted RBP16.07■□□□□ 0.16
SHMT2-228ENST00000557302 RAD21O60216 631 aa16.06■□□□□ 0.16
SHMT2-228ENST00000557302 NT5C2P49902 561 aa16.06■□□□□ 0.16
SHMT2-228ENST00000557302 C17orf99Q6UX52 265 aa16.06■□□□□ 0.16
SHMT2-228ENST00000557302 ESR2Q92731 530 aa16.06■□□□□ 0.16
SHMT2-228ENST00000557302 ERO1AQ96HE7 468 aa16.06■□□□□ 0.16
SHMT2-228ENST00000557302 LSG1Q9H089 658 aaKnown RBP16.06■□□□□ 0.16
SHMT2-228ENST00000557302 RPAP3Q9H6T3 665 aaPredicted RBP16.06■□□□□ 0.16
SHMT2-228ENST00000557302 CLIP2Q9UDT6 1046 aa16.06■□□□□ 0.16
SHMT2-228ENST00000557302 RBM8AQ9Y5S9 174 aaKnown RBP16.06■□□□□ 0.16
SHMT2-228ENST00000557302 CYP21A2P08686 494 aa16.05■□□□□ 0.16
SHMT2-228ENST00000557302 BCRP11274 1271 aa16.05■□□□□ 0.16
SHMT2-228ENST00000557302 GCLCP48506 637 aaPredicted RBP16.05■□□□□ 0.16
SHMT2-228ENST00000557302 CATSPERGQ6ZRH7 1159 aa16.05■□□□□ 0.16
SHMT2-228ENST00000557302 SPICE1Q8N0Z3 855 aa16.05■□□□□ 0.16
SHMT2-228ENST00000557302 P2RX7Q99572 595 aaKnown RBP16.05■□□□□ 0.16
SHMT2-228ENST00000557302 CNNM2Q9H8M5 875 aa16.05■□□□□ 0.16
SHMT2-228ENST00000557302 SYNPO2Q9UMS6 1093 aa16.05■□□□□ 0.16
SHMT2-228ENST00000557302 CASP8AP2Q9UKL3 1982 aa16.05■□□□□ 0.16
SHMT2-228ENST00000557302 LAMA4Q16363 1823 aa16.05■□□□□ 0.16
SHMT2-228ENST00000557302 WDR46O15213 610 aaKnown RBP16.04■□□□□ 0.16
SHMT2-228ENST00000557302 NMT2O60551 498 aa16.04■□□□□ 0.16
SHMT2-228ENST00000557302 HERVK_113P62684 666 aa16.04■□□□□ 0.16
SHMT2-228ENST00000557302 KIF22Q14807 665 aa16.04■□□□□ 0.16
SHMT2-228ENST00000557302 KIAA1755Q5JYT7 1200 aa16.04■□□□□ 0.16
SHMT2-228ENST00000557302 CD99L2Q8TCZ2 262 aa16.04■□□□□ 0.16
SHMT2-228ENST00000557302 GTF3C2Q8WUA4 911 aaPredicted RBP16.04■□□□□ 0.16
SHMT2-228ENST00000557302 MKL1Q969V6 931 aa16.04■□□□□ 0.16
SHMT2-228ENST00000557302 KRT23Q9C075 422 aa16.04■□□□□ 0.16
SHMT2-228ENST00000557302 TANGO6Q9C0B7 1094 aa16.04■□□□□ 0.16
SHMT2-228ENST00000557302 IL17RBQ9NRM6 502 aa16.04■□□□□ 0.16
SHMT2-228ENST00000557302 TCP11L1Q9NUJ3 509 aa16.04■□□□□ 0.16
SHMT2-228ENST00000557302 STX8Q9UNK0 236 aa16.04■□□□□ 0.16
SHMT2-228ENST00000557302 B4E1Z4 1266 aa16.03■□□□□ 0.16
SHMT2-228ENST00000557302 KDM4AO75164 1064 aa16.03■□□□□ 0.16
SHMT2-228ENST00000557302 LACTBP83111 547 aaPredicted RBP16.03■□□□□ 0.16
SHMT2-228ENST00000557302 TRDNQ13061 729 aa16.03■□□□□ 0.16
SHMT2-228ENST00000557302 ARHGEF6Q15052 776 aa16.03■□□□□ 0.16
SHMT2-228ENST00000557302 CTU1Q7Z7A3 348 aaKnown RBP16.03■□□□□ 0.16
SHMT2-228ENST00000557302 LRRC47Q8N1G4 583 aaKnown RBP16.03■□□□□ 0.16
SHMT2-228ENST00000557302 ANKRD13CQ8N6S4 541 aa16.03■□□□□ 0.16
SHMT2-228ENST00000557302 F5H6K3 240 aa16.02■□□□□ 0.16
SHMT2-228ENST00000557302 NDUFB10O96000 172 aa16.02■□□□□ 0.16
SHMT2-228ENST00000557302 CACNB1Q02641 598 aaPredicted RBP16.02■□□□□ 0.16
SHMT2-228ENST00000557302 KLRC3Q07444 240 aa16.02■□□□□ 0.16
SHMT2-228ENST00000557302 FAM110CQ1W6H9 321 aa16.02■□□□□ 0.16
SHMT2-228ENST00000557302 GMCL1P1Q8NEA9 526 aa16.02■□□□□ 0.16
SHMT2-228ENST00000557302 NOVP48745 357 aa16.01■□□□□ 0.15
SHMT2-228ENST00000557302 COG2Q14746 738 aa16.01■□□□□ 0.15
SHMT2-228ENST00000557302 CCDC178Q5BJE1 867 aa16.01■□□□□ 0.15
SHMT2-228ENST00000557302 FAM83BQ5T0W9 1011 aa16.01■□□□□ 0.15
SHMT2-228ENST00000557302 IQCA1Q86XH1 822 aa16.01■□□□□ 0.15
SHMT2-228ENST00000557302 NKX2-3Q8TAU0 364 aa16.01■□□□□ 0.15
SHMT2-228ENST00000557302 EFCC1Q9HA90 598 aa16.01■□□□□ 0.15
SHMT2-228ENST00000557302 HOXC10Q9NYD6 342 aa16.01■□□□□ 0.15
SHMT2-228ENST00000557302 TRIM17Q9Y577 477 aa16.01■□□□□ 0.15
SHMT2-228ENST00000557302 SPDYE16A6NNV3 312 aaPredicted RBP16■□□□□ 0.15
SHMT2-228ENST00000557302 E7EWF7 191 aa16■□□□□ 0.15
SHMT2-228ENST00000557302 FLOT1O75955 427 aa16■□□□□ 0.15
SHMT2-228ENST00000557302 TOP1P11387 765 aaKnown RBP16■□□□□ 0.15
SHMT2-228ENST00000557302 CREB3L3Q68CJ9 461 aa16■□□□□ 0.15
SHMT2-228ENST00000557302 SLFN13Q68D06 897 aa16■□□□□ 0.15
SHMT2-228ENST00000557302 LBX2Q6XYB7 198 aa16■□□□□ 0.15
SHMT2-228ENST00000557302 RALYLQ86SE5 291 aaKnown RBP16■□□□□ 0.15
SHMT2-228ENST00000557302 TTC14Q96N46 770 aa16■□□□□ 0.15
SHMT2-228ENST00000557302 NUP88Q99567 741 aaPredicted RBP16■□□□□ 0.15
SHMT2-228ENST00000557302 ZKSCAN3Q9BRR0 538 aa16■□□□□ 0.15
SHMT2-228ENST00000557302 PAGR1Q9BTK6 254 aa16■□□□□ 0.15
SHMT2-228ENST00000557302 ARHGAP39Q9C0H5 1083 aa16■□□□□ 0.15
SHMT2-228ENST00000557302 ZSWIM5Q9P217 1185 aa16■□□□□ 0.15
SHMT2-228ENST00000557302 MORF4L1Q9UBU8 362 aa16■□□□□ 0.15
SHMT2-228ENST00000557302 RABGAP1Q9Y3P9 1069 aa16■□□□□ 0.15
SHMT2-228ENST00000557302 TAF6LQ9Y6J9 622 aa16■□□□□ 0.15
SHMT2-228ENST00000557302 MYPNQ86TC9 1320 aa15.99■□□□□ 0.15
SHMT2-228ENST00000557302 SLC27A2O14975 620 aa15.99■□□□□ 0.15
SHMT2-228ENST00000557302 ECM2O94769 699 aaPredicted RBP15.99■□□□□ 0.15
SHMT2-228ENST00000557302 REC8O95072 547 aa15.99■□□□□ 0.15
SHMT2-228ENST00000557302 PSMC4P43686 418 aa15.99■□□□□ 0.15
SHMT2-228ENST00000557302 FCGRTP55899 365 aa15.99■□□□□ 0.15
SHMT2-228ENST00000557302 NECTIN1Q15223 517 aa15.99■□□□□ 0.15
SHMT2-228ENST00000557302 RNF20Q5VTR2 975 aa15.99■□□□□ 0.15
SHMT2-228ENST00000557302 SAMD1Q6SPF0 538 aaPredicted RBP15.99■□□□□ 0.15
SHMT2-228ENST00000557302 OTOP1Q7RTM1 612 aa15.99■□□□□ 0.15
SHMT2-228ENST00000557302 DGKHQ86XP1 1220 aa15.99■□□□□ 0.15
SHMT2-228ENST00000557302 GPRC5AQ8NFJ5 357 aa15.99■□□□□ 0.15
SHMT2-228ENST00000557302 NCOA7Q8NI08 942 aa15.99■□□□□ 0.15
Retrieved 100 of 20,778 RNA–protein pairs in 14.8 ms