RNA–Protein interactions for RNA: ENST00000556726.5

CCDC88C-211, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 5

Gene CCDC88C, Length 3,617 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-211ENST00000556726 GTPBP4Q9BZE4 634 aaKnown RBP13.71□□□□□ -0.21
CCDC88C-211ENST00000556726 VPS18Q9P253 973 aa13.71□□□□□ -0.21
CCDC88C-211ENST00000556726 RFX7Q2KHR2 1363 aa13.71□□□□□ -0.22
CCDC88C-211ENST00000556726 DMTNQ08495 405 aa13.71□□□□□ -0.22
CCDC88C-211ENST00000556726 PTPAQ15257 358 aa13.71□□□□□ -0.22
CCDC88C-211ENST00000556726 FOXP1Q9H334 677 aaPredicted RBP13.71□□□□□ -0.22
CCDC88C-211ENST00000556726 EXOC1Q9NV70 894 aa13.71□□□□□ -0.22
CCDC88C-211ENST00000556726 TFR2Q9UP52 801 aa13.71□□□□□ -0.22
CCDC88C-211ENST00000556726 LTN1O94822 1766 aa13.71□□□□□ -0.22
CCDC88C-211ENST00000556726 FMN2Q9NZ56 1722 aa13.71□□□□□ -0.22
CCDC88C-211ENST00000556726 PSDA5PKW4 1024 aaPredicted RBP13.7□□□□□ -0.22
CCDC88C-211ENST00000556726 ZSCAN20P17040 1043 aaPredicted RBP13.7□□□□□ -0.22
CCDC88C-211ENST00000556726 ARID4AP29374 1257 aaPredicted RBP13.7□□□□□ -0.22
CCDC88C-211ENST00000556726 PLCD1P51178 756 aa13.7□□□□□ -0.22
CCDC88C-211ENST00000556726 CCDC181Q5TID7 509 aa13.7□□□□□ -0.22
CCDC88C-211ENST00000556726 CACNA2D4Q7Z3S7 1137 aa13.7□□□□□ -0.22
CCDC88C-211ENST00000556726 PAGE5Q96GU1 130 aa13.7□□□□□ -0.22
CCDC88C-211ENST00000556726 BIN2Q9UBW5 565 aaPredicted RBP13.7□□□□□ -0.22
CCDC88C-211ENST00000556726 LUC7L2Q9Y383 392 aaKnown RBP13.7□□□□□ -0.22
CCDC88C-211ENST00000556726 FRMPD2Q68DX3 1309 aaPredicted RBP13.7□□□□□ -0.22
CCDC88C-211ENST00000556726 ERLIN1O75477 346 aa13.7□□□□□ -0.22
CCDC88C-211ENST00000556726 SCG2P13521 617 aa13.7□□□□□ -0.22
CCDC88C-211ENST00000556726 PDE4DQ08499 809 aa13.7□□□□□ -0.22
CCDC88C-211ENST00000556726 DNAJC21Q5F1R6 531 aaKnown RBP13.7□□□□□ -0.22
CCDC88C-211ENST00000556726 CCDC122Q5T0U0 273 aa13.7□□□□□ -0.22
CCDC88C-211ENST00000556726 SPTY2D1Q68D10 685 aaPredicted RBP13.7□□□□□ -0.22
CCDC88C-211ENST00000556726 ANKRD13CQ8N6S4 541 aa13.7□□□□□ -0.22
CCDC88C-211ENST00000556726 FAM217BQ9NTX9 383 aaPredicted RBP13.7□□□□□ -0.22
CCDC88C-211ENST00000556726 FBXO2Q9UK22 296 aaPredicted RBP13.7□□□□□ -0.22
CCDC88C-211ENST00000556726 CTAGE15A4D2H0 777 aa13.7□□□□□ -0.22
CCDC88C-211ENST00000556726 PSMA7O14818 248 aa13.7□□□□□ -0.22
CCDC88C-211ENST00000556726 BAG3O95817 575 aa13.7□□□□□ -0.22
CCDC88C-211ENST00000556726 CTAGE8P0CG41 777 aa13.7□□□□□ -0.22
CCDC88C-211ENST00000556726 VEGFAP15692 232 aaPredicted RBP13.7□□□□□ -0.22
CCDC88C-211ENST00000556726 TBC1D8BQ0IIM8 1120 aa13.7□□□□□ -0.22
CCDC88C-211ENST00000556726 CTAGE6Q86UF2 777 aa13.7□□□□□ -0.22
CCDC88C-211ENST00000556726 CTAGE4Q8IX94 777 aa13.7□□□□□ -0.22
CCDC88C-211ENST00000556726 SLC35F6Q8N357 371 aa13.7□□□□□ -0.22
CCDC88C-211ENST00000556726 TIGD1Q96MW7 591 aa13.7□□□□□ -0.22
CCDC88C-211ENST00000556726 SRPRBQ9Y5M8 271 aaKnown RBP13.7□□□□□ -0.22
CCDC88C-211ENST00000556726 GOLGA6L9A6NEM1 432 aa13.69□□□□□ -0.22
CCDC88C-211ENST00000556726 NTRK3Q16288 839 aa13.69□□□□□ -0.22
CCDC88C-211ENST00000556726 CSGALNACT2Q8N6G5 542 aa13.69□□□□□ -0.22
CCDC88C-211ENST00000556726 ANKRD7Q92527 254 aa13.69□□□□□ -0.22
CCDC88C-211ENST00000556726 AKR1B10O60218 316 aa13.69□□□□□ -0.22
CCDC88C-211ENST00000556726 OAS2P29728 719 aaKnown RBP13.69□□□□□ -0.22
CCDC88C-211ENST00000556726 TECP42680 631 aa13.69□□□□□ -0.22
CCDC88C-211ENST00000556726 ITPK1Q13572 414 aa13.69□□□□□ -0.22
CCDC88C-211ENST00000556726 CCDC70Q6NSX1 233 aa13.69□□□□□ -0.22
CCDC88C-211ENST00000556726 C3orf67Q6ZVT6 689 aa13.69□□□□□ -0.22
CCDC88C-211ENST00000556726 CTAGE1Q96RT6 745 aa13.69□□□□□ -0.22
CCDC88C-211ENST00000556726 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP13.69□□□□□ -0.22
CCDC88C-211ENST00000556726 DDX41Q9UJV9 622 aaKnown RBP13.69□□□□□ -0.22
CCDC88C-211ENST00000556726 CTIFO43310 598 aaKnown RBP13.69□□□□□ -0.22
CCDC88C-211ENST00000556726 MORC3Q14149 939 aa13.69□□□□□ -0.22
CCDC88C-211ENST00000556726 SPA17Q15506 151 aa13.69□□□□□ -0.22
CCDC88C-211ENST00000556726 SPATA1Q5VX52 437 aa13.69□□□□□ -0.22
CCDC88C-211ENST00000556726 NYAP1Q6ZVC0 841 aa13.69□□□□□ -0.22
CCDC88C-211ENST00000556726 SGMS1Q86VZ5 419 aa13.69□□□□□ -0.22
CCDC88C-211ENST00000556726 TEX11Q8IYF3 940 aa13.69□□□□□ -0.22
CCDC88C-211ENST00000556726 STAG2Q8N3U4 1231 aa13.69□□□□□ -0.22
CCDC88C-211ENST00000556726 CCDC148Q8NFR7 591 aa13.69□□□□□ -0.22
CCDC88C-211ENST00000556726 FAM207AQ9NSI2 230 aaPredicted RBP13.69□□□□□ -0.22
CCDC88C-211ENST00000556726 FER1L4A9Z1Z3 1794 aa13.68□□□□□ -0.22
CCDC88C-211ENST00000556726 KCNJ18B7U540 433 aa13.68□□□□□ -0.22
CCDC88C-211ENST00000556726 CALM1P0DP23 149 aa13.68□□□□□ -0.22
CCDC88C-211ENST00000556726 CALM2P0DP24 149 aa13.68□□□□□ -0.22
CCDC88C-211ENST00000556726 CALM3P0DP25 149 aa13.68□□□□□ -0.22
CCDC88C-211ENST00000556726 KCNJ12Q14500 433 aa13.68□□□□□ -0.22
CCDC88C-211ENST00000556726 DHX37Q8IY37 1157 aaKnown RBP13.68□□□□□ -0.22
CCDC88C-211ENST00000556726 HPS3Q969F9 1004 aa13.68□□□□□ -0.22
CCDC88C-211ENST00000556726 MINPP1Q9UNW1 487 aa13.68□□□□□ -0.22
CCDC88C-211ENST00000556726 A0A0U1RQJ8 604 aa13.68□□□□□ -0.22
CCDC88C-211ENST00000556726 USP17L2Q6R6M4 530 aa13.68□□□□□ -0.22
CCDC88C-211ENST00000556726 BLIDQ8IZY5 108 aa13.68□□□□□ -0.22
CCDC88C-211ENST00000556726 STAG1Q8WVM7 1258 aa13.68□□□□□ -0.22
CCDC88C-211ENST00000556726 ATRIPQ8WXE1 791 aa13.68□□□□□ -0.22
CCDC88C-211ENST00000556726 AK7Q96M32 723 aa13.68□□□□□ -0.22
CCDC88C-211ENST00000556726 RNF26Q9BY78 433 aaPredicted RBP13.68□□□□□ -0.22
CCDC88C-211ENST00000556726 RBM28Q9NW13 759 aaKnown RBP13.68□□□□□ -0.22
CCDC88C-211ENST00000556726 RTCBQ9Y3I0 505 aaKnown RBP13.68□□□□□ -0.22
CCDC88C-211ENST00000556726 UFL1O94874 794 aa13.68□□□□□ -0.22
CCDC88C-211ENST00000556726 SLFN14P0C7P3 912 aa13.68□□□□□ -0.22
CCDC88C-211ENST00000556726 RASGRP2Q7LDG7 609 aa13.68□□□□□ -0.22
CCDC88C-211ENST00000556726 CNGA4Q8IV77 575 aa13.68□□□□□ -0.22
CCDC88C-211ENST00000556726 LRRC47Q8N1G4 583 aaKnown RBP13.68□□□□□ -0.22
CCDC88C-211ENST00000556726 SRBD1Q8N5C6 995 aaKnown RBP13.68□□□□□ -0.22
CCDC88C-211ENST00000556726 CCNL1Q9UK58 526 aaPredicted RBP13.68□□□□□ -0.22
CCDC88C-211ENST00000556726 RGPD1P0DJD0 1748 aa13.67□□□□□ -0.22
CCDC88C-211ENST00000556726 BMP6P22004 513 aa13.67□□□□□ -0.22
CCDC88C-211ENST00000556726 LEKR1Q6ZMV7 388 aa13.67□□□□□ -0.22
CCDC88C-211ENST00000556726 CALML4Q96GE6 196 aa13.67□□□□□ -0.22
CCDC88C-211ENST00000556726 RUFY1Q96T51 708 aa13.67□□□□□ -0.22
CCDC88C-211ENST00000556726 MAP3K14Q99558 947 aa13.67□□□□□ -0.22
CCDC88C-211ENST00000556726 SLC39A2Q9NP94 309 aa13.67□□□□□ -0.22
CCDC88C-211ENST00000556726 CYP27A1Q02318 531 aa13.67□□□□□ -0.22
CCDC88C-211ENST00000556726 TAF3Q5VWG9 929 aa13.67□□□□□ -0.22
CCDC88C-211ENST00000556726 TCERG1LQ5VWI1 586 aa13.67□□□□□ -0.22
CCDC88C-211ENST00000556726 ENOX1Q8TC92 643 aaKnown RBP13.67□□□□□ -0.22
CCDC88C-211ENST00000556726 FAM84BQ96KN1 310 aaPredicted RBP13.67□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 16.2 ms