RNA–Protein interactions for RNA: ENST00000556725.1

SYNE2-222, Transcript of spectrin repeat containing nuclear envelope protein 2, human

TSL 3

Gene SYNE2, Length 672 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SYNE2-222	ENST00000556725	BTBD7	Q9P203	1132 aa		10.64	□□□□□ -0.71
SYNE2-222	ENST00000556725	RABGAP1	Q9Y3P9	1069 aa		10.64	□□□□□ -0.71
SYNE2-222	ENST00000556725	RLF	Q13129	1914 aa		10.64	□□□□□ -0.71
SYNE2-222	ENST00000556725	FLT1	P17948	1338 aa		10.63	□□□□□ -0.71
SYNE2-222	ENST00000556725	SLC15A5	A6NIM6	579 aa		10.63	□□□□□ -0.71
SYNE2-222	ENST00000556725		E9PSI1	815 aa		10.63	□□□□□ -0.71
SYNE2-222	ENST00000556725	DNM1L	O00429	736 aa		10.63	□□□□□ -0.71
SYNE2-222	ENST00000556725	GH2	P01242	217 aa		10.63	□□□□□ -0.71
SYNE2-222	ENST00000556725	IGHA2	P01877	340 aa		10.63	□□□□□ -0.71
SYNE2-222	ENST00000556725	PPP4C	P60510	307 aa		10.63	□□□□□ -0.71
SYNE2-222	ENST00000556725	DYNLL1	P63167	89 aa	Known RBP	10.63	□□□□□ -0.71
SYNE2-222	ENST00000556725	CATSPERG	Q6ZRH7	1159 aa		10.63	□□□□□ -0.71
SYNE2-222	ENST00000556725	GTF3C2	Q8WUA4	911 aa	Predicted RBP	10.63	□□□□□ -0.71
SYNE2-222	ENST00000556725	NOL10	Q9BSC4	688 aa	Known RBP	10.63	□□□□□ -0.71
SYNE2-222	ENST00000556725	TRIM34	Q9BYJ4	488 aa		10.63	□□□□□ -0.71
SYNE2-222	ENST00000556725	PRDM5	Q9NQX1	630 aa	Predicted RBP	10.63	□□□□□ -0.71
SYNE2-222	ENST00000556725	PRKAG2	Q9UGJ0	569 aa		10.63	□□□□□ -0.71
SYNE2-222	ENST00000556725	TRIM43B	A6NCK2	446 aa		10.62	□□□□□ -0.71
SYNE2-222	ENST00000556725	USP17L15	C9J2P7	530 aa		10.62	□□□□□ -0.71
SYNE2-222	ENST00000556725	USP17L13	C9JLJ4	530 aa		10.62	□□□□□ -0.71
SYNE2-222	ENST00000556725	USP17L11	C9JVI0	530 aa		10.62	□□□□□ -0.71
SYNE2-222	ENST00000556725	USP17L18	D6R9N7	530 aa		10.62	□□□□□ -0.71
SYNE2-222	ENST00000556725	USP17L22	D6RA61	530 aa		10.62	□□□□□ -0.71
SYNE2-222	ENST00000556725	USP17L17	D6RBQ6	530 aa		10.62	□□□□□ -0.71
SYNE2-222	ENST00000556725	USP17L19	D6RCP7	530 aa		10.62	□□□□□ -0.71
SYNE2-222	ENST00000556725	USP17L20	D6RJB6	530 aa		10.62	□□□□□ -0.71
SYNE2-222	ENST00000556725	BAG3	O95817	575 aa		10.62	□□□□□ -0.71
SYNE2-222	ENST00000556725	HOXC6	P09630	235 aa		10.62	□□□□□ -0.71
SYNE2-222	ENST00000556725	CYBA	P13498	195 aa		10.62	□□□□□ -0.71
SYNE2-222	ENST00000556725	USP17L24	Q0WX57	530 aa		10.62	□□□□□ -0.71
SYNE2-222	ENST00000556725	GRB14	Q14449	540 aa		10.62	□□□□□ -0.71
SYNE2-222	ENST00000556725	ACER1	Q8TDN7	264 aa		10.62	□□□□□ -0.71
SYNE2-222	ENST00000556725	TRIM43	Q96BQ3	446 aa	Predicted RBP	10.62	□□□□□ -0.71
SYNE2-222	ENST00000556725	C12orf42	Q96LP6	360 aa		10.62	□□□□□ -0.71
SYNE2-222	ENST00000556725	GINM1	Q9NU53	330 aa		10.62	□□□□□ -0.71
SYNE2-222	ENST00000556725	FOCAD	Q5VW36	1801 aa		10.62	□□□□□ -0.71
SYNE2-222	ENST00000556725	MSC	O60682	206 aa		10.61	□□□□□ -0.71
SYNE2-222	ENST00000556725	GLRX3	O76003	335 aa	Known RBP	10.61	□□□□□ -0.71
SYNE2-222	ENST00000556725	CYP2E1	P05181	493 aa	Predicted RBP	10.61	□□□□□ -0.71
SYNE2-222	ENST00000556725	ITGB8	P26012	769 aa		10.61	□□□□□ -0.71
SYNE2-222	ENST00000556725	EPHB4	P54760	987 aa		10.61	□□□□□ -0.71
SYNE2-222	ENST00000556725	CCNA1	P78396	465 aa		10.61	□□□□□ -0.71
SYNE2-222	ENST00000556725	SMAD3	P84022	425 aa	Known RBP	10.61	□□□□□ -0.71
SYNE2-222	ENST00000556725	MTX1	Q13505	466 aa		10.61	□□□□□ -0.71
SYNE2-222	ENST00000556725	TRIM60	Q495X7	471 aa		10.61	□□□□□ -0.71
SYNE2-222	ENST00000556725	PRAMEF19	Q5SWL8	479 aa		10.61	□□□□□ -0.71
SYNE2-222	ENST00000556725	FERMT2	Q96AC1	680 aa		10.61	□□□□□ -0.71
SYNE2-222	ENST00000556725	FEZ1	Q99689	392 aa		10.61	□□□□□ -0.71
SYNE2-222	ENST00000556725	PDLIM7	Q9NR12	457 aa		10.61	□□□□□ -0.71
SYNE2-222	ENST00000556725	RAPGEFL1	Q9UHV5	662 aa		10.61	□□□□□ -0.71
SYNE2-222	ENST00000556725	HDAC5	Q9UQL6	1122 aa		10.61	□□□□□ -0.71
SYNE2-222	ENST00000556725	MUC3A	Q02505	3323 aa		10.61	□□□□□ -0.71
SYNE2-222	ENST00000556725	PNMA6E	A0A0J9YXQ4	647 aa		10.6	□□□□□ -0.71
SYNE2-222	ENST00000556725	SPDYE16	A6NNV3	312 aa	Predicted RBP	10.6	□□□□□ -0.71
SYNE2-222	ENST00000556725	COBL	O75128	1261 aa		10.6	□□□□□ -0.71
SYNE2-222	ENST00000556725	UQCRFS1P1	P0C7P4	283 aa		10.6	□□□□□ -0.71
SYNE2-222	ENST00000556725	FOSL2	P15408	326 aa		10.6	□□□□□ -0.71
SYNE2-222	ENST00000556725	VCAM1	P19320	739 aa		10.6	□□□□□ -0.71
SYNE2-222	ENST00000556725	ADCYAP1R1	P41586	468 aa		10.6	□□□□□ -0.71
SYNE2-222	ENST00000556725	RAB3GAP1	Q15042	981 aa		10.6	□□□□□ -0.71
SYNE2-222	ENST00000556725	TATDN1	Q6P1N9	297 aa		10.6	□□□□□ -0.71
SYNE2-222	ENST00000556725	USP38	Q8NB14	1042 aa		10.6	□□□□□ -0.71
SYNE2-222	ENST00000556725	ARRDC4	Q8NCT1	418 aa		10.6	□□□□□ -0.71
SYNE2-222	ENST00000556725	API5	Q9BZZ5	524 aa	Known RBP	10.6	□□□□□ -0.71
SYNE2-222	ENST00000556725	RPAP3	Q9H6T3	665 aa	Predicted RBP	10.6	□□□□□ -0.71
SYNE2-222	ENST00000556725	IVNS1ABP	Q9Y6Y0	642 aa		10.6	□□□□□ -0.71
SYNE2-222	ENST00000556725	MYH1	P12882	1939 aa		10.6	□□□□□ -0.71
SYNE2-222	ENST00000556725	SMCHD1	A6NHR9	2005 aa		10.6	□□□□□ -0.71
SYNE2-222	ENST00000556725	KBTBD13	C9JR72	458 aa		10.59	□□□□□ -0.71
SYNE2-222	ENST00000556725	HLA-DOA	P06340	250 aa		10.59	□□□□□ -0.71
SYNE2-222	ENST00000556725	COL9A1	P20849	921 aa		10.59	□□□□□ -0.71
SYNE2-222	ENST00000556725	ADORA2A	P29274	412 aa		10.59	□□□□□ -0.71
SYNE2-222	ENST00000556725	GUCY1A2	P33402	732 aa		10.59	□□□□□ -0.71
SYNE2-222	ENST00000556725	ZAP70	P43403	619 aa		10.59	□□□□□ -0.71
SYNE2-222	ENST00000556725	G3BP1	Q13283	466 aa	Known RBP eCLIP	10.59	□□□□□ -0.71
SYNE2-222	ENST00000556725	SNX17	Q15036	470 aa		10.59	□□□□□ -0.71
SYNE2-222	ENST00000556725	LBX2	Q6XYB7	198 aa		10.59	□□□□□ -0.71
SYNE2-222	ENST00000556725	DPP9	Q86TI2	863 aa		10.59	□□□□□ -0.71
SYNE2-222	ENST00000556725	TRMT2A	Q8IZ69	625 aa	Known RBP	10.59	□□□□□ -0.71
SYNE2-222	ENST00000556725	DBNDD2	Q9BQY9	259 aa		10.59	□□□□□ -0.71
SYNE2-222	ENST00000556725	MOV10L1	Q9BXT6	1211 aa	Known RBP	10.59	□□□□□ -0.71
SYNE2-222	ENST00000556725	KIAA1683	Q9H0B3	1180 aa		10.59	□□□□□ -0.71
SYNE2-222	ENST00000556725	PIH1D3	Q9NQM4	214 aa	Known RBP	10.59	□□□□□ -0.71
SYNE2-222	ENST00000556725	SEPT4	O43236	478 aa		10.58	□□□□□ -0.72
SYNE2-222	ENST00000556725	GNAI3	P08754	354 aa		10.58	□□□□□ -0.72
SYNE2-222	ENST00000556725	CYP7A1	P22680	504 aa		10.58	□□□□□ -0.72
SYNE2-222	ENST00000556725	TLE2	Q04725	743 aa		10.58	□□□□□ -0.72
SYNE2-222	ENST00000556725	GRIN2C	Q14957	1233 aa		10.58	□□□□□ -0.72
SYNE2-222	ENST00000556725	LRRC41	Q15345	812 aa		10.58	□□□□□ -0.72
SYNE2-222	ENST00000556725	CERKL	Q49MI3	558 aa	Predicted RBP	10.58	□□□□□ -0.72
SYNE2-222	ENST00000556725	TTC39A	Q5SRH9	613 aa		10.58	□□□□□ -0.72
SYNE2-222	ENST00000556725	OLFML2B	Q68BL8	750 aa		10.58	□□□□□ -0.72
SYNE2-222	ENST00000556725	MIGA1	Q8NAN2	632 aa		10.58	□□□□□ -0.72
SYNE2-222	ENST00000556725	SYMPK	Q92797	1274 aa	Known RBP	10.58	□□□□□ -0.72
SYNE2-222	ENST00000556725	TNN	Q9UQP3	1299 aa		10.58	□□□□□ -0.72
SYNE2-222	ENST00000556725	ZNFX1	Q9P2E3	1918 aa	Known RBP	10.57	□□□□□ -0.72
SYNE2-222	ENST00000556725		A0A1W2PRG0	241 aa		10.57	□□□□□ -0.72
SYNE2-222	ENST00000556725	ERCC3	P19447	782 aa		10.57	□□□□□ -0.72
SYNE2-222	ENST00000556725	SHMT1	P34896	483 aa		10.57	□□□□□ -0.72
SYNE2-222	ENST00000556725	USP5	P45974	858 aa		10.57	□□□□□ -0.72

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