RNA–Protein interactions for RNA: ENST00000556498.1

TDP1-215, Transcript of tyrosyl-DNA phosphodiesterase 1, humanhuman

TSL 3

Gene TDP1, Length 597 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TDP1-215ENST00000556498 GOLGA5Q8TBA6 731 aa7.08□□□□□ -1.28
TDP1-215ENST00000556498 ALKBH8Q96BT7 664 aaKnown RBP7.08□□□□□ -1.28
TDP1-215ENST00000556498 DTNBP1Q96EV8 351 aa7.08□□□□□ -1.28
TDP1-215ENST00000556498 THOC1Q96FV9 657 aaKnown RBP7.08□□□□□ -1.28
TDP1-215ENST00000556498 ABHD17AQ96GS6 310 aa7.08□□□□□ -1.28
TDP1-215ENST00000556498 SLC39A3Q9BRY0 314 aa7.08□□□□□ -1.28
TDP1-215ENST00000556498 YIPF2Q9BWQ6 316 aa7.08□□□□□ -1.28
TDP1-215ENST00000556498 CFHR5Q9BXR6 569 aa7.08□□□□□ -1.28
TDP1-215ENST00000556498 ALDH8A1Q9H2A2 487 aaPredicted RBP7.08□□□□□ -1.28
TDP1-215ENST00000556498 ATG3Q9NT62 314 aa7.08□□□□□ -1.28
TDP1-215ENST00000556498 NXF1Q9UBU9 619 aaKnown RBP7.08□□□□□ -1.28
TDP1-215ENST00000556498 TCEAL9Q9UHQ7 104 aa7.08□□□□□ -1.28
TDP1-215ENST00000556498 XPO7Q9UIA9 1087 aaKnown RBP7.08□□□□□ -1.28
TDP1-215ENST00000556498 ATXN7L1Q9ULK2 861 aaPredicted RBP7.08□□□□□ -1.28
TDP1-215ENST00000556498 BRD4O60885 1362 aaPredicted RBP7.08□□□□□ -1.28
TDP1-215ENST00000556498 PLEKHG2Q9H7P9 1386 aa7.08□□□□□ -1.28
TDP1-215ENST00000556498 RNF123Q5XPI4 1314 aa7.07□□□□□ -1.28
TDP1-215ENST00000556498 A6NHS1 94 aa7.07□□□□□ -1.28
TDP1-215ENST00000556498 XYLBO75191 536 aa7.07□□□□□ -1.28
TDP1-215ENST00000556498 USP11P51784 963 aa7.07□□□□□ -1.28
TDP1-215ENST00000556498 CSE1LP55060 971 aaKnown RBP7.07□□□□□ -1.28
TDP1-215ENST00000556498 TPM4P67936 248 aa7.07□□□□□ -1.28
TDP1-215ENST00000556498 TBC1D8BQ0IIM8 1120 aa7.07□□□□□ -1.28
TDP1-215ENST00000556498 SEPT2Q15019 361 aa7.07□□□□□ -1.28
TDP1-215ENST00000556498 SART3Q15020 963 aaKnown RBP7.07□□□□□ -1.28
TDP1-215ENST00000556498 NAALADL2Q58DX5 795 aa7.07□□□□□ -1.28
TDP1-215ENST00000556498 PDE12Q6L8Q7 609 aaKnown RBP7.07□□□□□ -1.28
TDP1-215ENST00000556498 FOXR1Q6PIV2 292 aa7.07□□□□□ -1.28
TDP1-215ENST00000556498 PACS1Q6VY07 963 aa7.07□□□□□ -1.28
TDP1-215ENST00000556498 SV2AQ7L0J3 742 aa7.07□□□□□ -1.28
TDP1-215ENST00000556498 SPATA21Q7Z572 469 aa7.07□□□□□ -1.28
TDP1-215ENST00000556498 DZIP1Q86YF9 867 aaKnown RBP7.07□□□□□ -1.28
TDP1-215ENST00000556498 ERC1Q8IUD2 1116 aa7.07□□□□□ -1.28
TDP1-215ENST00000556498 ATP11CQ8NB49 1132 aa7.07□□□□□ -1.28
TDP1-215ENST00000556498 PIBF1Q8WXW3 757 aa7.07□□□□□ -1.28
TDP1-215ENST00000556498 ZNF512BQ96KM6 892 aaPredicted RBP7.07□□□□□ -1.28
TDP1-215ENST00000556498 LNPKQ9C0E8 428 aa7.07□□□□□ -1.28
TDP1-215ENST00000556498 PDGFDQ9GZP0 370 aaPredicted RBP7.07□□□□□ -1.28
TDP1-215ENST00000556498 TMX1Q9H3N1 280 aa7.07□□□□□ -1.28
TDP1-215ENST00000556498 STRN4Q9NRL3 753 aa7.07□□□□□ -1.28
TDP1-215ENST00000556498 IFT57Q9NWB7 429 aa7.07□□□□□ -1.28
TDP1-215ENST00000556498 TRMT1Q9NXH9 659 aaKnown RBP7.07□□□□□ -1.28
TDP1-215ENST00000556498 FAM53CQ9NYF3 392 aa7.07□□□□□ -1.28
TDP1-215ENST00000556498 MARK1Q9P0L2 795 aa7.07□□□□□ -1.28
TDP1-215ENST00000556498 CTNNA3Q9UI47 895 aa7.07□□□□□ -1.28
TDP1-215ENST00000556498 CFAP45Q9UL16 551 aa7.07□□□□□ -1.28
TDP1-215ENST00000556498 LUC7L2Q9Y383 392 aaKnown RBP7.07□□□□□ -1.28
TDP1-215ENST00000556498 SLC30A1Q9Y6M5 507 aa7.07□□□□□ -1.28
TDP1-215ENST00000556498 NPC1L1Q9UHC9 1359 aa7.07□□□□□ -1.28
TDP1-215ENST00000556498 WIZO95785 1651 aa7.06□□□□□ -1.28
TDP1-215ENST00000556498 CDC14CA4D256 554 aa7.06□□□□□ -1.28
TDP1-215ENST00000556498 TBKBP1A7MCY6 615 aa7.06□□□□□ -1.28
TDP1-215ENST00000556498 ERC2O15083 957 aa7.06□□□□□ -1.28
TDP1-215ENST00000556498 CTIFO43310 598 aaKnown RBP7.06□□□□□ -1.28
TDP1-215ENST00000556498 PRC1O43663 620 aa7.06□□□□□ -1.28
TDP1-215ENST00000556498 CYP11B2P19099 503 aa7.06□□□□□ -1.28
TDP1-215ENST00000556498 PSMA3P25788 255 aa7.06□□□□□ -1.28
TDP1-215ENST00000556498 SMARCA1P28370 1054 aa7.06□□□□□ -1.28
TDP1-215ENST00000556498 ELF1P32519 619 aa7.06□□□□□ -1.28
TDP1-215ENST00000556498 MCM4P33991 863 aa7.06□□□□□ -1.28
TDP1-215ENST00000556498 NEK2P51955 445 aa7.06□□□□□ -1.28
TDP1-215ENST00000556498 FMR1Q06787 632 aaKnown RBP eCLIP7.06□□□□□ -1.28
TDP1-215ENST00000556498 ANKRD45Q5TZF3 282 aa7.06□□□□□ -1.28
TDP1-215ENST00000556498 AGAP9Q5VTM2 703 aa7.06□□□□□ -1.28
TDP1-215ENST00000556498 NPAS3Q8IXF0 933 aa7.06□□□□□ -1.28
TDP1-215ENST00000556498 GBP7Q8N8V2 638 aaPredicted RBP7.06□□□□□ -1.28
TDP1-215ENST00000556498 CCDC89Q8N998 374 aa7.06□□□□□ -1.28
TDP1-215ENST00000556498 MAML1Q92585 1016 aa7.06□□□□□ -1.28
TDP1-215ENST00000556498 USP6NLQ92738 828 aa7.06□□□□□ -1.28
TDP1-215ENST00000556498 EXOC4Q96A65 974 aa7.06□□□□□ -1.28
TDP1-215ENST00000556498 LRRC45Q96CN5 670 aa7.06□□□□□ -1.28
TDP1-215ENST00000556498 THUMPD2Q9BTF0 503 aaKnown RBP7.06□□□□□ -1.28
TDP1-215ENST00000556498 STK31Q9BXU1 1019 aa7.06□□□□□ -1.28
TDP1-215ENST00000556498 GSX2Q9BZM3 304 aa7.06□□□□□ -1.28
TDP1-215ENST00000556498 NIF3L1Q9GZT8 377 aa7.06□□□□□ -1.28
TDP1-215ENST00000556498 VCX3BQ9H321 246 aa7.06□□□□□ -1.28
TDP1-215ENST00000556498 CASS4Q9NQ75 786 aa7.06□□□□□ -1.28
TDP1-215ENST00000556498 ZKSCAN7Q9P0L1 754 aaPredicted RBP7.06□□□□□ -1.28
TDP1-215ENST00000556498 PHF24Q9UPV7 400 aa7.06□□□□□ -1.28
TDP1-215ENST00000556498 HMGXB3Q12766 1538 aa7.06□□□□□ -1.28
TDP1-215ENST00000556498 CCDC144AA2RUR9 1427 aa7.05□□□□□ -1.28
TDP1-215ENST00000556498 TLDC2A0PJX2 215 aa7.05□□□□□ -1.28
TDP1-215ENST00000556498 GPR25O00155 361 aa7.05□□□□□ -1.28
TDP1-215ENST00000556498 TBCAO75347 108 aaKnown RBP7.05□□□□□ -1.28
TDP1-215ENST00000556498 STAM2O75886 525 aa7.05□□□□□ -1.28
TDP1-215ENST00000556498 RTN3O95197 1032 aaPredicted RBP7.05□□□□□ -1.28
TDP1-215ENST00000556498 RPN1P04843 607 aaKnown RBP7.05□□□□□ -1.28
TDP1-215ENST00000556498 MYL1P05976 194 aa7.05□□□□□ -1.28
TDP1-215ENST00000556498 LMNB1P20700 586 aa7.05□□□□□ -1.28
TDP1-215ENST00000556498 ENPP1P22413 925 aa7.05□□□□□ -1.28
TDP1-215ENST00000556498 U2AF2P26368 475 aaKnown RBP eCLIP7.05□□□□□ -1.28
TDP1-215ENST00000556498 PDE4BQ07343 736 aa7.05□□□□□ -1.28
TDP1-215ENST00000556498 G3BP1Q13283 466 aaKnown RBP eCLIP7.05□□□□□ -1.28
TDP1-215ENST00000556498 CCINQ13939 588 aa7.05□□□□□ -1.28
TDP1-215ENST00000556498 DHX8Q14562 1220 aaKnown RBP7.05□□□□□ -1.28
TDP1-215ENST00000556498 SLMAPQ14BN4 828 aa7.05□□□□□ -1.28
TDP1-215ENST00000556498 ARHGEF6Q15052 776 aa7.05□□□□□ -1.28
TDP1-215ENST00000556498 ZNF787Q6DD87 383 aa7.05□□□□□ -1.28
TDP1-215ENST00000556498 CPLX2Q6PUV4 134 aaKnown RBP7.05□□□□□ -1.28
TDP1-215ENST00000556498 GBP6Q6ZN66 633 aa7.05□□□□□ -1.28
Retrieved 100 of 20,778 RNA–protein pairs in 18.2 ms