RNA–Protein interactions for RNA: ENST00000556412.4

VIPAS39-208, Transcript of VPS33B interacting protein, apical-basolateral polarity regulator, spe-39 homolog, humanhuman

TSL 2 BASIC

Gene VIPAS39, Length 1,832 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIPAS39-208ENST00000556412 NFXL1Q6ZNB6 911 aa16.49■□□□□ 0.23
VIPAS39-208ENST00000556412 RUFY3Q7L099 469 aa16.49■□□□□ 0.23
VIPAS39-208ENST00000556412 DGKHQ86XP1 1220 aa16.49■□□□□ 0.23
VIPAS39-208ENST00000556412 TTC14Q96N46 770 aa16.49■□□□□ 0.23
VIPAS39-208ENST00000556412 TBC1D32Q96NH3 1257 aa16.49■□□□□ 0.23
VIPAS39-208ENST00000556412 ZSWIM6Q9HCJ5 1215 aa16.49■□□□□ 0.23
VIPAS39-208ENST00000556412 GOPCQ9HD26 462 aa16.49■□□□□ 0.23
VIPAS39-208ENST00000556412 A0A0G2JLL6 359 aaPredicted RBP16.48■□□□□ 0.23
VIPAS39-208ENST00000556412 MANSC4A6NHS7 340 aaPredicted RBP16.48■□□□□ 0.23
VIPAS39-208ENST00000556412 C19orf81C9J6K1 198 aa16.48■□□□□ 0.23
VIPAS39-208ENST00000556412 TOP1P11387 765 aaKnown RBP16.48■□□□□ 0.23
VIPAS39-208ENST00000556412 PRRT2Q7Z6L0 340 aaPredicted RBP16.48■□□□□ 0.23
VIPAS39-208ENST00000556412 MS4A4AQ96JQ5 239 aa16.48■□□□□ 0.23
VIPAS39-208ENST00000556412 TMEM87BQ96K49 555 aa16.48■□□□□ 0.23
VIPAS39-208ENST00000556412 TM6SF1Q9BZW5 370 aa16.48■□□□□ 0.23
VIPAS39-208ENST00000556412 SENP2Q9HC62 589 aa16.48■□□□□ 0.23
VIPAS39-208ENST00000556412 DOCK1Q14185 1865 aa16.48■□□□□ 0.23
VIPAS39-208ENST00000556412 SH2B2O14492 632 aaPredicted RBP16.47■□□□□ 0.23
VIPAS39-208ENST00000556412 EXOSC10Q01780 885 aaKnown RBP16.47■□□□□ 0.23
VIPAS39-208ENST00000556412 SEC23AQ15436 765 aa16.47■□□□□ 0.23
VIPAS39-208ENST00000556412 IGDCC4Q8TDY8 1250 aa16.47■□□□□ 0.23
VIPAS39-208ENST00000556412 BRI3BPQ8WY22 251 aa16.47■□□□□ 0.23
VIPAS39-208ENST00000556412 VCPKMTQ9H867 229 aa16.47■□□□□ 0.23
VIPAS39-208ENST00000556412 EMILIN3Q9NT22 766 aa16.47■□□□□ 0.23
VIPAS39-208ENST00000556412 F5H6K3 240 aa16.47■□□□□ 0.23
VIPAS39-208ENST00000556412 KLRC3Q07444 240 aa16.47■□□□□ 0.23
VIPAS39-208ENST00000556412 SREBF2Q12772 1141 aa16.47■□□□□ 0.23
VIPAS39-208ENST00000556412 Q6ZUG5 572 aa16.47■□□□□ 0.23
VIPAS39-208ENST00000556412 FASTKD5Q7L8L6 764 aaKnown RBP16.47■□□□□ 0.23
VIPAS39-208ENST00000556412 PNMA1Q8ND90 353 aa16.47■□□□□ 0.23
VIPAS39-208ENST00000556412 MKL1Q969V6 931 aa16.47■□□□□ 0.23
VIPAS39-208ENST00000556412 PDRG1Q9NUG6 133 aa16.47■□□□□ 0.23
VIPAS39-208ENST00000556412 NAP1L2Q9ULW6 460 aaPredicted RBP16.47■□□□□ 0.23
VIPAS39-208ENST00000556412 CCDC69A6NI79 296 aa16.46■□□□□ 0.23
VIPAS39-208ENST00000556412 NDUFB10O96000 172 aa16.46■□□□□ 0.23
VIPAS39-208ENST00000556412 NOVP48745 357 aa16.46■□□□□ 0.23
VIPAS39-208ENST00000556412 SH3D19Q5HYK7 790 aa16.46■□□□□ 0.23
VIPAS39-208ENST00000556412 KIAA1755Q5JYT7 1200 aa16.46■□□□□ 0.23
VIPAS39-208ENST00000556412 SLFN13Q68D06 897 aa16.46■□□□□ 0.23
VIPAS39-208ENST00000556412 NUP88Q99567 741 aaPredicted RBP16.46■□□□□ 0.23
VIPAS39-208ENST00000556412 LY9Q9HBG7 655 aa16.46■□□□□ 0.23
VIPAS39-208ENST00000556412 WDR19Q8NEZ3 1342 aa16.46■□□□□ 0.23
VIPAS39-208ENST00000556412 VCAM1P19320 739 aa16.45■□□□□ 0.22
VIPAS39-208ENST00000556412 NEK4P51957 841 aa16.45■□□□□ 0.22
VIPAS39-208ENST00000556412 TREML2Q5T2D2 321 aa16.45■□□□□ 0.22
VIPAS39-208ENST00000556412 SAMD1Q6SPF0 538 aaPredicted RBP16.45■□□□□ 0.22
VIPAS39-208ENST00000556412 RASGRP2Q7LDG7 609 aa16.45■□□□□ 0.22
VIPAS39-208ENST00000556412 BRF1Q92994 677 aa16.45■□□□□ 0.22
VIPAS39-208ENST00000556412 MTA3Q9BTC8 594 aa16.45■□□□□ 0.22
VIPAS39-208ENST00000556412 CCDC96Q2M329 555 aa16.45■□□□□ 0.22
VIPAS39-208ENST00000556412 CATIPQ7Z7H3 387 aa16.45■□□□□ 0.22
VIPAS39-208ENST00000556412 RAB11FIP4Q86YS3 637 aa16.45■□□□□ 0.22
VIPAS39-208ENST00000556412 PROCA1Q8NCQ7 364 aaPredicted RBP16.45■□□□□ 0.22
VIPAS39-208ENST00000556412 GMCL1P1Q8NEA9 526 aa16.45■□□□□ 0.22
VIPAS39-208ENST00000556412 ANKS1AQ92625 1134 aa16.45■□□□□ 0.22
VIPAS39-208ENST00000556412 LPAR1Q92633 364 aa16.45■□□□□ 0.22
VIPAS39-208ENST00000556412 MYL10Q9BUA6 226 aa16.45■□□□□ 0.22
VIPAS39-208ENST00000556412 TANGO6Q9C0B7 1094 aa16.45■□□□□ 0.22
VIPAS39-208ENST00000556412 RPAP3Q9H6T3 665 aaPredicted RBP16.45■□□□□ 0.22
VIPAS39-208ENST00000556412 BTBD19C9JJ37 291 aa16.44■□□□□ 0.22
VIPAS39-208ENST00000556412 SLC1A4P43007 532 aa16.44■□□□□ 0.22
VIPAS39-208ENST00000556412 MOGSQ13724 837 aa16.44■□□□□ 0.22
VIPAS39-208ENST00000556412 FAM83BQ5T0W9 1011 aa16.44■□□□□ 0.22
VIPAS39-208ENST00000556412 NOL8Q76FK4 1167 aaKnown RBP16.44■□□□□ 0.22
VIPAS39-208ENST00000556412 TMTC2Q8N394 836 aa16.44■□□□□ 0.22
VIPAS39-208ENST00000556412 NUP133Q8WUM0 1156 aa16.44■□□□□ 0.22
VIPAS39-208ENST00000556412 C12orf42Q96LP6 360 aa16.44■□□□□ 0.22
VIPAS39-208ENST00000556412 KIF2CQ99661 725 aa16.44■□□□□ 0.22
VIPAS39-208ENST00000556412 PTPN18Q99952 460 aa16.44■□□□□ 0.22
VIPAS39-208ENST00000556412 LARP6Q9BRS8 491 aaKnown RBP16.44■□□□□ 0.22
VIPAS39-208ENST00000556412 SYNPO2Q9UMS6 1093 aa16.44■□□□□ 0.22
VIPAS39-208ENST00000556412 AGTPBP1Q9UPW5 1226 aa16.44■□□□□ 0.22
VIPAS39-208ENST00000556412 SLC12A7Q9Y666 1083 aa16.44■□□□□ 0.22
VIPAS39-208ENST00000556412 IGF2BP3O00425 579 aaKnown RBP eCLIP16.43■□□□□ 0.22
VIPAS39-208ENST00000556412 MAP2K2P36507 400 aa16.43■□□□□ 0.22
VIPAS39-208ENST00000556412 LIFRP42702 1097 aa16.43■□□□□ 0.22
VIPAS39-208ENST00000556412 INHBEP58166 350 aa16.43■□□□□ 0.22
VIPAS39-208ENST00000556412 IKQ13123 557 aaPredicted RBP16.43■□□□□ 0.22
VIPAS39-208ENST00000556412 SYNE3Q6ZMZ3 975 aa16.43■□□□□ 0.22
VIPAS39-208ENST00000556412 FAM43AQ8N2R8 423 aa16.43■□□□□ 0.22
VIPAS39-208ENST00000556412 IL17RAQ96F46 866 aa16.43■□□□□ 0.22
VIPAS39-208ENST00000556412 FRMPD2Q68DX3 1309 aaPredicted RBP16.43■□□□□ 0.22
VIPAS39-208ENST00000556412 KLF18A0A0U1RQI7 1052 aa16.42■□□□□ 0.22
VIPAS39-208ENST00000556412 PDHXO00330 501 aa16.42■□□□□ 0.22
VIPAS39-208ENST00000556412 WDR46O15213 610 aaKnown RBP16.42■□□□□ 0.22
VIPAS39-208ENST00000556412 APOBRQ0VD83 1088 aa16.42■□□□□ 0.22
VIPAS39-208ENST00000556412 OTUD7BQ6GQQ9 843 aa16.42■□□□□ 0.22
VIPAS39-208ENST00000556412 GPAT2Q6NUI2 795 aa16.42■□□□□ 0.22
VIPAS39-208ENST00000556412 KCTD1Q719H9 257 aa16.42■□□□□ 0.22
VIPAS39-208ENST00000556412 IFNL1Q8IU54 200 aa16.42■□□□□ 0.22
VIPAS39-208ENST00000556412 ZNF654Q8IZM8 581 aa16.42■□□□□ 0.22
VIPAS39-208ENST00000556412 ATAD5Q96QE3 1844 aa16.42■□□□□ 0.22
VIPAS39-208ENST00000556412 TESPA1A2RU30 521 aaPredicted RBP16.42■□□□□ 0.22
VIPAS39-208ENST00000556412 GOLGA8HP0CJ92 632 aa16.42■□□□□ 0.22
VIPAS39-208ENST00000556412 PDHBP11177 359 aa16.42■□□□□ 0.22
VIPAS39-208ENST00000556412 BMP3P12645 472 aa16.42■□□□□ 0.22
VIPAS39-208ENST00000556412 RXRAP19793 462 aa16.42■□□□□ 0.22
VIPAS39-208ENST00000556412 IRX3P78415 501 aaPredicted RBP16.42■□□□□ 0.22
VIPAS39-208ENST00000556412 PABPC4Q13310 644 aaKnown RBP eCLIP16.42■□□□□ 0.22
VIPAS39-208ENST00000556412 RABEP1Q15276 862 aa16.42■□□□□ 0.22
Retrieved 100 of 20,778 RNA–protein pairs in 19.4 ms