RNA–Protein interactions for RNA: ENST00000555880.5

TDP1-213, Transcript of tyrosyl-DNA phosphodiesterase 1, humanhuman

TSL 5 BASIC

Gene TDP1, Length 1,894 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TDP1-213ENST00000555880 TMX1Q9H3N1 280 aa7.98□□□□□ -1.13
TDP1-213ENST00000555880 CABP5Q9NP86 173 aa7.98□□□□□ -1.13
TDP1-213ENST00000555880 RYDENQ9NUL5 291 aaKnown RBP7.98□□□□□ -1.13
TDP1-213ENST00000555880 RBM28Q9NW13 759 aaKnown RBP7.98□□□□□ -1.13
TDP1-213ENST00000555880 ARGLU1Q9NWB6 273 aaPredicted RBP7.98□□□□□ -1.13
TDP1-213ENST00000555880 ABCF2Q9UG63 623 aa7.98□□□□□ -1.13
TDP1-213ENST00000555880 SERTAD1Q9UHV2 236 aa7.98□□□□□ -1.13
TDP1-213ENST00000555880 ANAPC4Q9UJX5 808 aa7.98□□□□□ -1.13
TDP1-213ENST00000555880 NIP7Q9Y221 180 aaKnown RBP eCLIP7.98□□□□□ -1.13
TDP1-213ENST00000555880 NFE2L3Q9Y4A8 694 aa7.98□□□□□ -1.13
TDP1-213ENST00000555880 PCDHB6Q9Y5E3 794 aa7.98□□□□□ -1.13
TDP1-213ENST00000555880 TNKSO95271 1327 aa7.98□□□□□ -1.13
TDP1-213ENST00000555880 TMEM232C9JQI7 657 aa7.98□□□□□ -1.13
TDP1-213ENST00000555880 SNAP23O00161 211 aa7.98□□□□□ -1.13
TDP1-213ENST00000555880 GTPBP6O43824 516 aaPredicted RBP7.98□□□□□ -1.13
TDP1-213ENST00000555880 STX10O60499 249 aa7.98□□□□□ -1.13
TDP1-213ENST00000555880 SLIT2O94813 1529 aa7.98□□□□□ -1.13
TDP1-213ENST00000555880 PCP11498 1178 aaKnown RBP7.98□□□□□ -1.13
TDP1-213ENST00000555880 PDE4BQ07343 736 aa7.98□□□□□ -1.13
TDP1-213ENST00000555880 CAVIN4Q5BKX8 364 aa7.98□□□□□ -1.13
TDP1-213ENST00000555880 IFIT1BQ5T764 474 aaKnown RBP7.98□□□□□ -1.13
TDP1-213ENST00000555880 SPATA31A5Q5VU36 1347 aa7.98□□□□□ -1.13
TDP1-213ENST00000555880 INTS5Q6P9B9 1019 aaKnown RBP7.98□□□□□ -1.13
TDP1-213ENST00000555880 FBXO38Q6PIJ6 1188 aa7.98□□□□□ -1.13
TDP1-213ENST00000555880 BARGINQ6ZT62 677 aa7.98□□□□□ -1.13
TDP1-213ENST00000555880 FOXP4Q8IVH2 680 aaPredicted RBP7.98□□□□□ -1.13
TDP1-213ENST00000555880 SPATA31A7Q8IWB4 1347 aa7.98□□□□□ -1.13
TDP1-213ENST00000555880 UBXN4Q92575 508 aa7.98□□□□□ -1.13
TDP1-213ENST00000555880 FERMT2Q96AC1 680 aa7.98□□□□□ -1.13
TDP1-213ENST00000555880 C8orf37Q96NL8 207 aa7.98□□□□□ -1.13
TDP1-213ENST00000555880 ZSCAN10Q96SZ4 725 aaPredicted RBP7.98□□□□□ -1.13
TDP1-213ENST00000555880 AATFQ9NY61 560 aaKnown RBP eCLIP7.98□□□□□ -1.13
TDP1-213ENST00000555880 PRDM4Q9UKN5 801 aa7.98□□□□□ -1.13
TDP1-213ENST00000555880 TACC3Q9Y6A5 838 aa7.98□□□□□ -1.13
TDP1-213ENST00000555880 RREB1Q92766 1687 aa7.97□□□□□ -1.13
TDP1-213ENST00000555880 DUOX1Q9NRD9 1551 aa7.97□□□□□ -1.13
TDP1-213ENST00000555880 NPHP1O15259 732 aa7.97□□□□□ -1.13
TDP1-213ENST00000555880 FOXN1O15353 648 aa7.97□□□□□ -1.13
TDP1-213ENST00000555880 ACTN4O43707 911 aaKnown RBP7.97□□□□□ -1.13
TDP1-213ENST00000555880 CAMTA2O94983 1202 aa7.97□□□□□ -1.13
TDP1-213ENST00000555880 KIF20AO95235 890 aa7.97□□□□□ -1.13
TDP1-213ENST00000555880 ZNF18P17022 549 aa7.97□□□□□ -1.13
TDP1-213ENST00000555880 BMP6P22004 513 aa7.97□□□□□ -1.13
TDP1-213ENST00000555880 CCDC93Q567U6 631 aa7.97□□□□□ -1.13
TDP1-213ENST00000555880 ANKRD18AQ8IVF6 992 aa7.97□□□□□ -1.13
TDP1-213ENST00000555880 CMTR1Q8N1G2 835 aaKnown RBP7.97□□□□□ -1.13
TDP1-213ENST00000555880 SDR42E1Q8WUS8 393 aa7.97□□□□□ -1.13
TDP1-213ENST00000555880 CRISPLD2Q9H0B8 497 aa7.97□□□□□ -1.13
TDP1-213ENST00000555880 CSRNP2Q9H175 543 aa7.97□□□□□ -1.13
TDP1-213ENST00000555880 PPP2R2CQ9Y2T4 447 aa7.97□□□□□ -1.13
TDP1-213ENST00000555880 BAZ2AQ9UIF9 1905 aaKnown RBP7.97□□□□□ -1.13
TDP1-213ENST00000555880 SYNRGQ9UMZ2 1314 aa7.96□□□□□ -1.13
TDP1-213ENST00000555880 MYH13Q9UKX3 1938 aa7.96□□□□□ -1.13
TDP1-213ENST00000555880 PRPF3O43395 683 aaKnown RBP7.96□□□□□ -1.13
TDP1-213ENST00000555880 DDAH1O94760 285 aa7.96□□□□□ -1.13
TDP1-213ENST00000555880 URI1O94763 535 aaPredicted RBP7.96□□□□□ -1.13
TDP1-213ENST00000555880 NTSR2O95665 410 aa7.96□□□□□ -1.13
TDP1-213ENST00000555880 SLFN14P0C7P3 912 aa7.96□□□□□ -1.13
TDP1-213ENST00000555880 CASQ1P31415 396 aa7.96□□□□□ -1.13
TDP1-213ENST00000555880 SARSP49591 514 aaKnown RBP7.96□□□□□ -1.13
TDP1-213ENST00000555880 GRIN1Q05586 938 aa7.96□□□□□ -1.13
TDP1-213ENST00000555880 TBX2Q13207 712 aaPredicted RBP7.96□□□□□ -1.13
TDP1-213ENST00000555880 BMS1Q14692 1282 aaKnown RBP7.96□□□□□ -1.13
TDP1-213ENST00000555880 SEC23AQ15436 765 aa7.96□□□□□ -1.13
TDP1-213ENST00000555880 ERCC6LQ2NKX8 1250 aa7.96□□□□□ -1.13
TDP1-213ENST00000555880 FILIP1LQ4L180 1135 aa7.96□□□□□ -1.13
TDP1-213ENST00000555880 ARHGAP29Q52LW3 1261 aa7.96□□□□□ -1.13
TDP1-213ENST00000555880 HSP90AA4PQ58FG1 418 aa7.96□□□□□ -1.13
TDP1-213ENST00000555880 PPFIBP1Q86W92 1011 aa7.96□□□□□ -1.13
TDP1-213ENST00000555880 ENAHQ8N8S7 591 aaPredicted RBP7.96□□□□□ -1.13
TDP1-213ENST00000555880 OXER1Q8TDS5 423 aa7.96□□□□□ -1.13
TDP1-213ENST00000555880 SMARCC1Q92922 1105 aaPredicted RBP7.96□□□□□ -1.13
TDP1-213ENST00000555880 DHX58Q96C10 678 aa7.96□□□□□ -1.13
TDP1-213ENST00000555880 ACSBG1Q96GR2 724 aa7.96□□□□□ -1.13
TDP1-213ENST00000555880 CTAGE1Q96RT6 745 aa7.96□□□□□ -1.13
TDP1-213ENST00000555880 PYM1Q9BRP8 204 aaKnown RBP7.96□□□□□ -1.13
TDP1-213ENST00000555880 BRIP1Q9BX63 1249 aa7.96□□□□□ -1.13
TDP1-213ENST00000555880 VPS54Q9P1Q0 977 aa7.96□□□□□ -1.13
TDP1-213ENST00000555880 IQSEC3Q9UPP2 1182 aaPredicted RBP7.96□□□□□ -1.13
TDP1-213ENST00000555880 DLEC1Q9Y238 1755 aa7.96□□□□□ -1.13
TDP1-213ENST00000555880 CICQ96RK0 1608 aaPredicted RBP7.96□□□□□ -1.14
TDP1-213ENST00000555880 A0A1B0GUL6 1792 aa7.96□□□□□ -1.14
TDP1-213ENST00000555880 ZNF804BA4D1E1 1349 aa7.96□□□□□ -1.14
TDP1-213ENST00000555880 LOC102724428A0A0B4J2F2 783 aa7.96□□□□□ -1.14
TDP1-213ENST00000555880 SIK1P57059 783 aa7.96□□□□□ -1.14
TDP1-213ENST00000555880 FMR1Q06787 632 aaKnown RBP eCLIP7.96□□□□□ -1.14
TDP1-213ENST00000555880 UBE4AQ14139 1066 aa7.96□□□□□ -1.14
TDP1-213ENST00000555880 ZNF827Q17R98 1081 aa7.96□□□□□ -1.14
TDP1-213ENST00000555880 MEX3CQ5U5Q3 659 aaKnown RBP7.96□□□□□ -1.14
TDP1-213ENST00000555880 ZNF771Q7L3S4 317 aaPredicted RBP7.96□□□□□ -1.14
TDP1-213ENST00000555880 REXO1L1PQ8IX06 675 aa7.96□□□□□ -1.14
TDP1-213ENST00000555880 TRMT44Q8IYL2 757 aaKnown RBP7.96□□□□□ -1.14
TDP1-213ENST00000555880 GRAMD1CQ8IYS0 662 aa7.96□□□□□ -1.14
TDP1-213ENST00000555880 CTCFLQ8NI51 663 aaPredicted RBP7.96□□□□□ -1.14
TDP1-213ENST00000555880 UPF1Q92900 1129 aaKnown RBP eCLIP7.96□□□□□ -1.14
TDP1-213ENST00000555880 PHF20Q9BVI0 1012 aa7.96□□□□□ -1.14
TDP1-213ENST00000555880 INTS13Q9NVM9 706 aa7.96□□□□□ -1.14
TDP1-213ENST00000555880 COL16A1Q07092 1604 aaPredicted RBP7.96□□□□□ -1.14
TDP1-213ENST00000555880 BCL9LQ86UU0 1499 aa7.95□□□□□ -1.14
TDP1-213ENST00000555880 SCN7AQ01118 1682 aa7.95□□□□□ -1.14
Retrieved 100 of 20,778 RNA–protein pairs in 22.1 ms