RNA–Protein interactions for RNA: ENST00000554872.5

CCDC88C-209, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 4

Gene CCDC88C, Length 1,165 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-209ENST00000554872 SYNPO2Q9UMS6 1093 aa19.17■□□□□ 0.66
CCDC88C-209ENST00000554872 SPDYE16A6NNV3 312 aaPredicted RBP19.16■□□□□ 0.66
CCDC88C-209ENST00000554872 WDR46O15213 610 aaKnown RBP19.16■□□□□ 0.66
CCDC88C-209ENST00000554872 FOXP2O15409 715 aa19.16■□□□□ 0.66
CCDC88C-209ENST00000554872 CNMDO75829 334 aa19.16■□□□□ 0.66
CCDC88C-209ENST00000554872 XRCC5P13010 732 aaKnown RBP19.16■□□□□ 0.66
CCDC88C-209ENST00000554872 CCNA1P78396 465 aa19.16■□□□□ 0.66
CCDC88C-209ENST00000554872 NKX2-3Q8TAU0 364 aa19.16■□□□□ 0.66
CCDC88C-209ENST00000554872 IGKV6D-41A0A0C4DH26 115 aa19.15■□□□□ 0.66
CCDC88C-209ENST00000554872 ECM2O94769 699 aaPredicted RBP19.15■□□□□ 0.66
CCDC88C-209ENST00000554872 GJB1P08034 283 aa19.15■□□□□ 0.66
CCDC88C-209ENST00000554872 COG2Q14746 738 aa19.15■□□□□ 0.66
CCDC88C-209ENST00000554872 PLEKHM2Q8IWE5 1019 aa19.15■□□□□ 0.66
CCDC88C-209ENST00000554872 MB21D1Q8N884 522 aa19.15■□□□□ 0.66
CCDC88C-209ENST00000554872 USP6NLQ92738 828 aa19.15■□□□□ 0.66
CCDC88C-209ENST00000554872 HOXC10Q9NYD6 342 aa19.15■□□□□ 0.66
CCDC88C-209ENST00000554872 ZMYM6O95789 1325 aa19.15■□□□□ 0.66
CCDC88C-209ENST00000554872 PARP14Q460N5 1801 aa19.14■□□□□ 0.65
CCDC88C-209ENST00000554872 MINDY4BA8MYZ0 360 aa19.14■□□□□ 0.65
CCDC88C-209ENST00000554872 APPP05067 770 aa19.14■□□□□ 0.65
CCDC88C-209ENST00000554872 CCL5P13501 91 aa19.14■□□□□ 0.65
CCDC88C-209ENST00000554872 EEF2P13639 858 aaKnown RBP19.14■□□□□ 0.65
CCDC88C-209ENST00000554872 EN2P19622 333 aaPredicted RBP19.14■□□□□ 0.65
CCDC88C-209ENST00000554872 GJA8P48165 433 aa19.14■□□□□ 0.65
CCDC88C-209ENST00000554872 MTFR1Q15390 333 aa19.14■□□□□ 0.65
CCDC88C-209ENST00000554872 ALX1Q15699 326 aa19.14■□□□□ 0.65
CCDC88C-209ENST00000554872 Q3C1V9 767 aa19.14■□□□□ 0.65
CCDC88C-209ENST00000554872 KIAA1755Q5JYT7 1200 aa19.14■□□□□ 0.65
CCDC88C-209ENST00000554872 CLEC10AQ8IUN9 316 aa19.14■□□□□ 0.65
CCDC88C-209ENST00000554872 TRMT44Q8IYL2 757 aaKnown RBP19.14■□□□□ 0.65
CCDC88C-209ENST00000554872 NAPBQ9H115 298 aa19.14■□□□□ 0.65
CCDC88C-209ENST00000554872 PORCNQ9H237 461 aa19.14■□□□□ 0.65
CCDC88C-209ENST00000554872 MKNK2Q9HBH9 465 aa19.14■□□□□ 0.65
CCDC88C-209ENST00000554872 NYAP2Q9P242 653 aa19.14■□□□□ 0.65
CCDC88C-209ENST00000554872 ZNF236Q9UL36 1845 aa19.14■□□□□ 0.65
CCDC88C-209ENST00000554872 HMGCRP04035 888 aa19.13■□□□□ 0.65
CCDC88C-209ENST00000554872 INHAP05111 366 aa19.13■□□□□ 0.65
CCDC88C-209ENST00000554872 SLC3A2P08195 630 aaKnown RBP19.13■□□□□ 0.65
CCDC88C-209ENST00000554872 MORN1Q5T089 497 aa19.13■□□□□ 0.65
CCDC88C-209ENST00000554872 GPR142Q7Z601 462 aa19.13■□□□□ 0.65
CCDC88C-209ENST00000554872 NUDT12Q9BQG2 462 aa19.13■□□□□ 0.65
CCDC88C-209ENST00000554872 PAGR1Q9BTK6 254 aa19.13■□□□□ 0.65
CCDC88C-209ENST00000554872 GOPCQ9HD26 462 aa19.13■□□□□ 0.65
CCDC88C-209ENST00000554872 PAK6Q9NQU5 681 aaPredicted RBP19.13■□□□□ 0.65
CCDC88C-209ENST00000554872 ANAPC4Q9UJX5 808 aa19.13■□□□□ 0.65
CCDC88C-209ENST00000554872 ELNP15502 786 aa19.12■□□□□ 0.65
CCDC88C-209ENST00000554872 PDE4BQ07343 736 aa19.12■□□□□ 0.65
CCDC88C-209ENST00000554872 PPARAQ07869 468 aa19.12■□□□□ 0.65
CCDC88C-209ENST00000554872 B4GALNT3Q6L9W6 998 aa19.12■□□□□ 0.65
CCDC88C-209ENST00000554872 PLEKHH3Q7Z736 793 aa19.12■□□□□ 0.65
CCDC88C-209ENST00000554872 SHCBP1Q8NEM2 672 aa19.12■□□□□ 0.65
CCDC88C-209ENST00000554872 SHISA4Q96DD7 197 aa19.12■□□□□ 0.65
CCDC88C-209ENST00000554872 TANGO6Q9C0B7 1094 aa19.12■□□□□ 0.65
CCDC88C-209ENST00000554872 BTBD7Q9P203 1132 aa19.12■□□□□ 0.65
CCDC88C-209ENST00000554872 ADAMTS5Q9UNA0 930 aa19.12■□□□□ 0.65
CCDC88C-209ENST00000554872 PEX10O60683 326 aa19.11■□□□□ 0.65
CCDC88C-209ENST00000554872 DSG3P32926 999 aa19.11■□□□□ 0.65
CCDC88C-209ENST00000554872 MCMDC2Q4G0Z9 681 aa19.11■□□□□ 0.65
CCDC88C-209ENST00000554872 MKL1Q969V6 931 aa19.11■□□□□ 0.65
CCDC88C-209ENST00000554872 RNF208Q9H0X6 261 aa19.11■□□□□ 0.65
CCDC88C-209ENST00000554872 BIN2Q9UBW5 565 aaPredicted RBP19.11■□□□□ 0.65
CCDC88C-209ENST00000554872 DDX52Q9Y2R4 599 aaKnown RBP eCLIP19.11■□□□□ 0.65
CCDC88C-209ENST00000554872 A0A0D9SFI3 127 aa19.1■□□□□ 0.65
CCDC88C-209ENST00000554872 HOXC6P09630 235 aa19.1■□□□□ 0.65
CCDC88C-209ENST00000554872 MAP3K21Q5TCX8 1036 aa19.1■□□□□ 0.65
CCDC88C-209ENST00000554872 UBE2Q1Q7Z7E8 422 aa19.1■□□□□ 0.65
CCDC88C-209ENST00000554872 CCAR1Q8IX12 1150 aaKnown RBP19.1■□□□□ 0.65
CCDC88C-209ENST00000554872 ZNF444Q8N0Y2 327 aaPredicted RBP19.1■□□□□ 0.65
CCDC88C-209ENST00000554872 NEDD1Q8NHV4 660 aa19.1■□□□□ 0.65
CCDC88C-209ENST00000554872 APBA2Q99767 749 aa19.1■□□□□ 0.65
CCDC88C-209ENST00000554872 MTMR4Q9NYA4 1195 aa19.1■□□□□ 0.65
CCDC88C-209ENST00000554872 SLC15A5A6NIM6 579 aa19.09■□□□□ 0.65
CCDC88C-209ENST00000554872 FGRP09769 529 aa19.09■□□□□ 0.65
CCDC88C-209ENST00000554872 RGS2P41220 211 aa19.09■□□□□ 0.65
CCDC88C-209ENST00000554872 GRB14Q14449 540 aa19.09■□□□□ 0.65
CCDC88C-209ENST00000554872 PPP4R3BQ5MIZ7 849 aa19.09■□□□□ 0.65
CCDC88C-209ENST00000554872 PRPF38BQ5VTL8 546 aaKnown RBP19.09■□□□□ 0.65
CCDC88C-209ENST00000554872 CCDC129Q6ZRS4 1044 aa19.09■□□□□ 0.65
CCDC88C-209ENST00000554872 SPICE1Q8N0Z3 855 aa19.09■□□□□ 0.65
CCDC88C-209ENST00000554872 FAM227BQ96M60 508 aa19.09■□□□□ 0.65
CCDC88C-209ENST00000554872 SPATC1LQ9H0A9 340 aa19.09■□□□□ 0.65
CCDC88C-209ENST00000554872 UNC93B1Q9H1C4 597 aa19.09■□□□□ 0.65
CCDC88C-209ENST00000554872 FLOT1O75955 427 aa19.08■□□□□ 0.64
CCDC88C-209ENST00000554872 PTPREP23469 700 aa19.08■□□□□ 0.64
CCDC88C-209ENST00000554872 MFAP1P55081 439 aaKnown RBP19.08■□□□□ 0.64
CCDC88C-209ENST00000554872 MAP2K5Q13163 448 aa19.08■□□□□ 0.64
CCDC88C-209ENST00000554872 VPS53Q5VIR6 699 aa19.08■□□□□ 0.64
CCDC88C-209ENST00000554872 GMCL1P1Q8NEA9 526 aa19.08■□□□□ 0.64
CCDC88C-209ENST00000554872 U2AF1L4Q8WU68 220 aaKnown RBP19.08■□□□□ 0.64
CCDC88C-209ENST00000554872 TRIB2Q92519 343 aa19.08■□□□□ 0.64
CCDC88C-209ENST00000554872 CRISPLD2Q9H0B8 497 aa19.08■□□□□ 0.64
CCDC88C-209ENST00000554872 CCDC171Q6TFL3 1326 aa19.07■□□□□ 0.64
CCDC88C-209ENST00000554872 RPTORQ8N122 1335 aa19.07■□□□□ 0.64
CCDC88C-209ENST00000554872 TRIM6-TRIM34B2RNG4 842 aa19.07■□□□□ 0.64
CCDC88C-209ENST00000554872 HIP1O00291 1037 aa19.07■□□□□ 0.64
CCDC88C-209ENST00000554872 STRNO43815 780 aa19.07■□□□□ 0.64
CCDC88C-209ENST00000554872 ORC4O43929 436 aa19.07■□□□□ 0.64
CCDC88C-209ENST00000554872 SGPL1O95470 568 aa19.07■□□□□ 0.64
CCDC88C-209ENST00000554872 TTLL1O95922 423 aa19.07■□□□□ 0.64
CCDC88C-209ENST00000554872 MYCP01106 439 aaPredicted RBP19.07■□□□□ 0.64
Retrieved 100 of 20,778 RNA–protein pairs in 37.8 ms