RNA–Protein interactions for RNA: ENST00000554805.6

SYNE2-213, Transcript of spectrin repeat containing nuclear envelope protein 2, humanhuman

TSL 1 (best)

Gene SYNE2, Length 3,481 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2-213ENST00000554805 PCMTD1Q96MG8 357 aaPredicted RBP10.75□□□□□ -0.69
SYNE2-213ENST00000554805 GSDMAQ96QA5 445 aa10.75□□□□□ -0.69
SYNE2-213ENST00000554805 PLIN2Q99541 437 aa10.75□□□□□ -0.69
SYNE2-213ENST00000554805 CDC23Q9UJX2 597 aa10.75□□□□□ -0.69
SYNE2-213ENST00000554805 ALS2Q96Q42 1657 aa10.75□□□□□ -0.69
SYNE2-213ENST00000554805 PNPLA7Q6ZV29 1317 aa10.75□□□□□ -0.69
SYNE2-213ENST00000554805 USP17L12C9JPN9 530 aa10.75□□□□□ -0.69
SYNE2-213ENST00000554805 USP17L21D6R901 530 aa10.75□□□□□ -0.69
SYNE2-213ENST00000554805 ZBTB22O15209 634 aa10.75□□□□□ -0.69
SYNE2-213ENST00000554805 ATP8B1O43520 1251 aa10.75□□□□□ -0.69
SYNE2-213ENST00000554805 KRT9P35527 623 aa10.75□□□□□ -0.69
SYNE2-213ENST00000554805 FXR1P51114 621 aaKnown RBP eCLIP10.75□□□□□ -0.69
SYNE2-213ENST00000554805 ADGRA1Q86SQ6 560 aa10.75□□□□□ -0.69
SYNE2-213ENST00000554805 ZNF34Q8IZ26 560 aa10.75□□□□□ -0.69
SYNE2-213ENST00000554805 NAA15Q9BXJ9 866 aaKnown RBP10.75□□□□□ -0.69
SYNE2-213ENST00000554805 ADD3Q9UEY8 706 aaKnown RBP10.75□□□□□ -0.69
SYNE2-213ENST00000554805 GUCA1BQ9UMX6 200 aa10.75□□□□□ -0.69
SYNE2-213ENST00000554805 COL5A2P05997 1499 aaPredicted RBP10.75□□□□□ -0.69
SYNE2-213ENST00000554805 CTAGE15A4D2H0 777 aa10.75□□□□□ -0.69
SYNE2-213ENST00000554805 WNT7AO00755 349 aa10.75□□□□□ -0.69
SYNE2-213ENST00000554805 CTAGE8P0CG41 777 aa10.75□□□□□ -0.69
SYNE2-213ENST00000554805 ATP6V1AP38606 617 aa10.75□□□□□ -0.69
SYNE2-213ENST00000554805 UBXN1Q04323 297 aa10.75□□□□□ -0.69
SYNE2-213ENST00000554805 KRT31Q15323 416 aa10.75□□□□□ -0.69
SYNE2-213ENST00000554805 CAVIN4Q5BKX8 364 aa10.75□□□□□ -0.69
SYNE2-213ENST00000554805 CTAGE6Q86UF2 777 aa10.75□□□□□ -0.69
SYNE2-213ENST00000554805 CTAGE4Q8IX94 777 aa10.75□□□□□ -0.69
SYNE2-213ENST00000554805 NELFBQ8WX92 580 aa10.75□□□□□ -0.69
SYNE2-213ENST00000554805 TNS2Q63HR2 1409 aa10.74□□□□□ -0.69
SYNE2-213ENST00000554805 PRPF3O43395 683 aaKnown RBP10.74□□□□□ -0.69
SYNE2-213ENST00000554805 TFRCP02786 760 aaKnown RBP10.74□□□□□ -0.69
SYNE2-213ENST00000554805 PAK1Q13153 545 aa10.74□□□□□ -0.69
SYNE2-213ENST00000554805 RSRC2Q7L4I2 434 aaKnown RBP10.74□□□□□ -0.69
SYNE2-213ENST00000554805 TXLNBQ8N3L3 684 aa10.74□□□□□ -0.69
SYNE2-213ENST00000554805 CCDC102AQ96A19 550 aa10.74□□□□□ -0.69
SYNE2-213ENST00000554805 NAPGQ99747 312 aaPredicted RBP10.74□□□□□ -0.69
SYNE2-213ENST00000554805 RBM28Q9NW13 759 aaKnown RBP10.74□□□□□ -0.69
SYNE2-213ENST00000554805 ZKSCAN7Q9P0L1 754 aaPredicted RBP10.74□□□□□ -0.69
SYNE2-213ENST00000554805 JAG2Q9Y219 1238 aa10.74□□□□□ -0.69
SYNE2-213ENST00000554805 DPYDQ12882 1025 aa10.74□□□□□ -0.69
SYNE2-213ENST00000554805 PKN1Q16512 942 aa10.74□□□□□ -0.69
SYNE2-213ENST00000554805 TMTC1Q8IUR5 882 aa10.74□□□□□ -0.69
SYNE2-213ENST00000554805 PHF20Q9BVI0 1012 aa10.74□□□□□ -0.69
SYNE2-213ENST00000554805 TTF2Q9UNY4 1162 aaKnown RBP10.74□□□□□ -0.69
SYNE2-213ENST00000554805 TJP1Q07157 1748 aa10.74□□□□□ -0.69
SYNE2-213ENST00000554805 PARP4Q9UKK3 1724 aaKnown RBP10.74□□□□□ -0.69
SYNE2-213ENST00000554805 TSPY2A6NKD2 308 aa10.74□□□□□ -0.69
SYNE2-213ENST00000554805 PPP1R3GB7ZBB8 358 aa10.74□□□□□ -0.69
SYNE2-213ENST00000554805 NMT2O60551 498 aa10.74□□□□□ -0.69
SYNE2-213ENST00000554805 STAT6P42226 847 aa10.74□□□□□ -0.69
SYNE2-213ENST00000554805 COPB1P53618 953 aaKnown RBP10.74□□□□□ -0.69
SYNE2-213ENST00000554805 SPAG1Q07617 926 aa10.74□□□□□ -0.69
SYNE2-213ENST00000554805 CUL4BQ13620 913 aa10.74□□□□□ -0.69
SYNE2-213ENST00000554805 BRD3Q15059 726 aa10.74□□□□□ -0.69
SYNE2-213ENST00000554805 PPP2R5BQ15173 497 aa10.74□□□□□ -0.69
SYNE2-213ENST00000554805 SEC23AQ15436 765 aa10.74□□□□□ -0.69
SYNE2-213ENST00000554805 HSP90B2PQ58FF3 399 aa10.74□□□□□ -0.69
SYNE2-213ENST00000554805 ANKRD18AQ8IVF6 992 aa10.74□□□□□ -0.69
SYNE2-213ENST00000554805 ZFP91Q96JP5 570 aaPredicted RBP10.74□□□□□ -0.69
SYNE2-213ENST00000554805 VPS18Q9P253 973 aa10.74□□□□□ -0.69
SYNE2-213ENST00000554805 COL18A1P39060 1754 aa10.73□□□□□ -0.69
SYNE2-213ENST00000554805 WTIPA6NIX2 430 aaPredicted RBP10.73□□□□□ -0.69
SYNE2-213ENST00000554805 KCNJ18B7U540 433 aa10.73□□□□□ -0.69
SYNE2-213ENST00000554805 CALM1P0DP23 149 aa10.73□□□□□ -0.69
SYNE2-213ENST00000554805 CALM2P0DP24 149 aa10.73□□□□□ -0.69
SYNE2-213ENST00000554805 CALM3P0DP25 149 aa10.73□□□□□ -0.69
SYNE2-213ENST00000554805 KCNJ12Q14500 433 aa10.73□□□□□ -0.69
SYNE2-213ENST00000554805 PDE11AQ9HCR9 933 aa10.73□□□□□ -0.69
SYNE2-213ENST00000554805 MAGEC2Q9UBF1 373 aaPredicted RBP10.73□□□□□ -0.69
SYNE2-213ENST00000554805 LAMB4A4D0S4 1761 aa10.73□□□□□ -0.69
SYNE2-213ENST00000554805 BAZ2BQ9UIF8 2168 aaKnown RBP10.73□□□□□ -0.69
SYNE2-213ENST00000554805 CCDC151A5D8V7 595 aa10.73□□□□□ -0.69
SYNE2-213ENST00000554805 POTEB2H3BUK9 544 aa10.73□□□□□ -0.69
SYNE2-213ENST00000554805 PHACTR2O75167 634 aa10.73□□□□□ -0.69
SYNE2-213ENST00000554805 EIF3JO75822 258 aaKnown RBP10.73□□□□□ -0.69
SYNE2-213ENST00000554805 GYPCP04921 128 aa10.73□□□□□ -0.69
SYNE2-213ENST00000554805 WWC2Q6AWC2 1192 aa10.73□□□□□ -0.69
SYNE2-213ENST00000554805 CYP26C1Q6V0L0 522 aa10.73□□□□□ -0.69
SYNE2-213ENST00000554805 CCDC87Q9NVE4 849 aa10.73□□□□□ -0.69
SYNE2-213ENST00000554805 GDAQ9Y2T3 454 aa10.73□□□□□ -0.69
SYNE2-213ENST00000554805 TNNT3P45378 269 aaPredicted RBP10.72□□□□□ -0.69
SYNE2-213ENST00000554805 HDXQ7Z353 690 aa10.72□□□□□ -0.69
SYNE2-213ENST00000554805 EEF2KMTQ96G04 330 aa10.72□□□□□ -0.69
SYNE2-213ENST00000554805 FUT8Q9BYC5 575 aa10.72□□□□□ -0.69
SYNE2-213ENST00000554805 GTPBP6O43824 516 aaPredicted RBP10.72□□□□□ -0.69
SYNE2-213ENST00000554805 EIF5P55010 431 aaKnown RBP10.72□□□□□ -0.69
SYNE2-213ENST00000554805 SLC20A2Q08357 652 aa10.72□□□□□ -0.69
SYNE2-213ENST00000554805 KIAA1328Q86T90 577 aa10.72□□□□□ -0.69
SYNE2-213ENST00000554805 SPATA20Q8TB22 786 aa10.72□□□□□ -0.69
SYNE2-213ENST00000554805 RASGRP4Q8TDF6 673 aa10.72□□□□□ -0.69
SYNE2-213ENST00000554805 SHISA4Q96DD7 197 aa10.72□□□□□ -0.69
SYNE2-213ENST00000554805 CCDC51Q96ER9 411 aa10.72□□□□□ -0.69
SYNE2-213ENST00000554805 TRIM47Q96LD4 638 aa10.72□□□□□ -0.69
SYNE2-213ENST00000554805 MTA3Q9BTC8 594 aa10.72□□□□□ -0.69
SYNE2-213ENST00000554805 CCDC194A0A1B0GVG4 234 aa10.72□□□□□ -0.69
SYNE2-213ENST00000554805 IPO7O95373 1038 aaKnown RBP10.72□□□□□ -0.69
SYNE2-213ENST00000554805 CRKLP46109 303 aaKnown RBP10.72□□□□□ -0.69
SYNE2-213ENST00000554805 RCAN1P53805 252 aa10.72□□□□□ -0.69
SYNE2-213ENST00000554805 MAPK8IP2Q13387 824 aaPredicted RBP10.72□□□□□ -0.69
SYNE2-213ENST00000554805 DDB1Q16531 1140 aa10.72□□□□□ -0.69
Retrieved 100 of 20,778 RNA–protein pairs in 32.2 ms