RNA–Protein interactions for RNA: ENST00000553868.1

SHMT2-208, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 2

Gene SHMT2, Length 941 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-208ENST00000553868 MROH7-TTC4A0A0A0MT08 1334 aa17.11■□□□□ 0.33
SHMT2-208ENST00000553868 MYO5AQ9Y4I1 1855 aaKnown RBP17.11■□□□□ 0.33
SHMT2-208ENST00000553868 PTPRFP10586 1907 aa17.1■□□□□ 0.33
SHMT2-208ENST00000553868 PPP4CP60510 307 aa17.1■□□□□ 0.33
SHMT2-208ENST00000553868 GIMAP6Q6P9H5 292 aa17.1■□□□□ 0.33
SHMT2-208ENST00000553868 FASTKD5Q7L8L6 764 aaKnown RBP17.1■□□□□ 0.33
SHMT2-208ENST00000553868 ZNF384Q8TF68 577 aa17.1■□□□□ 0.33
SHMT2-208ENST00000553868 SNX21Q969T3 373 aa17.1■□□□□ 0.33
SHMT2-208ENST00000553868 ZDHHC15Q96MV8 337 aa17.1■□□□□ 0.33
SHMT2-208ENST00000553868 RIOK1Q9BRS2 568 aaKnown RBP17.1■□□□□ 0.33
SHMT2-208ENST00000553868 NAPBQ9H115 298 aa17.1■□□□□ 0.33
SHMT2-208ENST00000553868 PLXNB2O15031 1838 aa17.1■□□□□ 0.33
SHMT2-208ENST00000553868 ZNF213O14771 459 aa17.09■□□□□ 0.33
SHMT2-208ENST00000553868 FGAP02671 866 aa17.09■□□□□ 0.33
SHMT2-208ENST00000553868 PRKAR2AP13861 404 aaKnown RBP17.09■□□□□ 0.33
SHMT2-208ENST00000553868 TDO2P48775 406 aa17.09■□□□□ 0.33
SHMT2-208ENST00000553868 MCM2P49736 904 aa17.09■□□□□ 0.33
SHMT2-208ENST00000553868 HDLBPQ00341 1268 aaKnown RBP17.09■□□□□ 0.33
SHMT2-208ENST00000553868 FKBP1CQ5VVH2 108 aa17.09■□□□□ 0.33
SHMT2-208ENST00000553868 ADGRA1Q86SQ6 560 aa17.09■□□□□ 0.33
SHMT2-208ENST00000553868 FRMD4AQ9P2Q2 1039 aaPredicted RBP17.09■□□□□ 0.33
SHMT2-208ENST00000553868 NCOR1O75376 2440 aa17.09■□□□□ 0.33
SHMT2-208ENST00000553868 LTBP2Q14767 1821 aa17.08■□□□□ 0.33
SHMT2-208ENST00000553868 GAKO14976 1311 aa17.08■□□□□ 0.32
SHMT2-208ENST00000553868 HMGB1P09429 215 aaKnown RBP17.08■□□□□ 0.32
SHMT2-208ENST00000553868 CCDC84Q86UT8 332 aaPredicted RBP17.08■□□□□ 0.32
SHMT2-208ENST00000553868 RASEFQ8IZ41 740 aa17.08■□□□□ 0.32
SHMT2-208ENST00000553868 IFNL3Q8IZI9 196 aa17.08■□□□□ 0.32
SHMT2-208ENST00000553868 FAM151AQ8WW52 585 aa17.08■□□□□ 0.32
SHMT2-208ENST00000553868 JAKMIP1Q96N16 626 aaKnown RBP17.08■□□□□ 0.32
SHMT2-208ENST00000553868 MRIQ9BWK5 157 aa17.08■□□□□ 0.32
SHMT2-208ENST00000553868 ATP8A2Q9NTI2 1148 aa17.08■□□□□ 0.32
SHMT2-208ENST00000553868 AATFQ9NY61 560 aaKnown RBP eCLIP17.08■□□□□ 0.32
SHMT2-208ENST00000553868 AFG3L2Q9Y4W6 797 aa17.08■□□□□ 0.32
SHMT2-208ENST00000553868 CYP46A1Q9Y6A2 500 aa17.08■□□□□ 0.32
SHMT2-208ENST00000553868 GPR75-ASB3A0A0A6YYF3 556 aa17.07■□□□□ 0.32
SHMT2-208ENST00000553868 GSG1L2A8MUP6 293 aa17.07■□□□□ 0.32
SHMT2-208ENST00000553868 FOXP2O15409 715 aa17.07■□□□□ 0.32
SHMT2-208ENST00000553868 CYP21A2P08686 494 aa17.07■□□□□ 0.32
SHMT2-208ENST00000553868 SLURP2P0DP57 97 aa17.07■□□□□ 0.32
SHMT2-208ENST00000553868 PTPRAP18433 802 aa17.07■□□□□ 0.32
SHMT2-208ENST00000553868 CYP2B6P20813 491 aa17.07■□□□□ 0.32
SHMT2-208ENST00000553868 NEK4P51957 841 aa17.07■□□□□ 0.32
SHMT2-208ENST00000553868 DYNLL1P63167 89 aaKnown RBP17.07■□□□□ 0.32
SHMT2-208ENST00000553868 NFIAQ12857 509 aa17.07■□□□□ 0.32
SHMT2-208ENST00000553868 DIXDC1Q155Q3 683 aa17.07■□□□□ 0.32
SHMT2-208ENST00000553868 TREML2Q5T2D2 321 aa17.07■□□□□ 0.32
SHMT2-208ENST00000553868 MAP3K21Q5TCX8 1036 aa17.07■□□□□ 0.32
SHMT2-208ENST00000553868 HHIPL2Q6UWX4 724 aa17.07■□□□□ 0.32
SHMT2-208ENST00000553868 SLC45A1Q9Y2W3 748 aa17.07■□□□□ 0.32
SHMT2-208ENST00000553868 BDP1A6H8Y1 2624 aa17.07■□□□□ 0.32
SHMT2-208ENST00000553868 TRIM75PA6NK02 468 aa17.06■□□□□ 0.32
SHMT2-208ENST00000553868 CASTP20810 708 aaKnown RBP17.06■□□□□ 0.32
SHMT2-208ENST00000553868 CCND3P30281 292 aaPredicted RBP17.06■□□□□ 0.32
SHMT2-208ENST00000553868 BTDP43251 543 aa17.06■□□□□ 0.32
SHMT2-208ENST00000553868 ATN1P54259 1190 aaPredicted RBP17.06■□□□□ 0.32
SHMT2-208ENST00000553868 FAM110CQ1W6H9 321 aa17.06■□□□□ 0.32
SHMT2-208ENST00000553868 LHX8Q68G74 356 aa17.06■□□□□ 0.32
SHMT2-208ENST00000553868 BLOC1S2Q6QNY1 142 aa17.06■□□□□ 0.32
SHMT2-208ENST00000553868 ZFPM1Q8IX07 1006 aa17.06■□□□□ 0.32
SHMT2-208ENST00000553868 ZSWIM6Q9HCJ5 1215 aa17.06■□□□□ 0.32
SHMT2-208ENST00000553868 PHF20L1A8MW92 1017 aa17.05■□□□□ 0.32
SHMT2-208ENST00000553868 USP5P45974 858 aa17.05■□□□□ 0.32
SHMT2-208ENST00000553868 TRDNQ13061 729 aa17.05■□□□□ 0.32
SHMT2-208ENST00000553868 GRIN2CQ14957 1233 aa17.05■□□□□ 0.32
SHMT2-208ENST00000553868 AMOTL1Q8IY63 956 aa17.05■□□□□ 0.32
SHMT2-208ENST00000553868 ADAMTS19Q8TE59 1207 aa17.05■□□□□ 0.32
SHMT2-208ENST00000553868 PPM1EQ8WY54 764 aa17.05■□□□□ 0.32
SHMT2-208ENST00000553868 NEK1Q96PY6 1258 aa17.05■□□□□ 0.32
SHMT2-208ENST00000553868 SENP6Q9GZR1 1112 aaPredicted RBP17.05■□□□□ 0.32
SHMT2-208ENST00000553868 EPB41L4AQ9HCS5 686 aaPredicted RBP17.05■□□□□ 0.32
SHMT2-208ENST00000553868 PICK1Q9NRD5 415 aa17.05■□□□□ 0.32
SHMT2-208ENST00000553868 PHIPQ8WWQ0 1821 aa17.05■□□□□ 0.32
SHMT2-208ENST00000553868 PRKAB2O43741 272 aa17.04■□□□□ 0.32
SHMT2-208ENST00000553868 PEX10O60683 326 aa17.04■□□□□ 0.32
SHMT2-208ENST00000553868 SMAD3P84022 425 aaKnown RBP17.04■□□□□ 0.32
SHMT2-208ENST00000553868 CACNB2Q08289 660 aaPredicted RBP17.04■□□□□ 0.32
SHMT2-208ENST00000553868 RUFY3Q7L099 469 aa17.04■□□□□ 0.32
SHMT2-208ENST00000553868 SCYL3Q8IZE3 742 aa17.04■□□□□ 0.32
SHMT2-208ENST00000553868 TBC1D2Q9BYX2 928 aa17.04■□□□□ 0.32
SHMT2-208ENST00000553868 UPF3BQ9BZI7 483 aaKnown RBP17.04■□□□□ 0.32
SHMT2-208ENST00000553868 RNF41Q9H4P4 317 aaPredicted RBP17.04■□□□□ 0.32
SHMT2-208ENST00000553868 AGTPBP1Q9UPW5 1226 aa17.04■□□□□ 0.32
SHMT2-208ENST00000553868 DAGLAQ9Y4D2 1042 aa17.04■□□□□ 0.32
SHMT2-208ENST00000553868 E7EWF7 191 aa17.03■□□□□ 0.32
SHMT2-208ENST00000553868 K7ELQ4 463 aaPredicted RBP17.03■□□□□ 0.32
SHMT2-208ENST00000553868 SLC3A2P08195 630 aaKnown RBP17.03■□□□□ 0.32
SHMT2-208ENST00000553868 ANKRD1Q15327 319 aa17.03■□□□□ 0.32
SHMT2-208ENST00000553868 ADCK5Q3MIX3 580 aa17.03■□□□□ 0.32
SHMT2-208ENST00000553868 RALYLQ86SE5 291 aaKnown RBP17.03■□□□□ 0.32
SHMT2-208ENST00000553868 TEX11Q8IYF3 940 aa17.03■□□□□ 0.32
SHMT2-208ENST00000553868 SH3RF3Q8TEJ3 882 aaPredicted RBP17.03■□□□□ 0.32
SHMT2-208ENST00000553868 SDR42E1Q8WUS8 393 aa17.03■□□□□ 0.32
SHMT2-208ENST00000553868 PDRG1Q9NUG6 133 aa17.03■□□□□ 0.32
SHMT2-208ENST00000553868 ARPP21Q9UBL0 812 aaPredicted RBP17.03■□□□□ 0.32
SHMT2-208ENST00000553868 FAM198AQ9UFP1 575 aa17.03■□□□□ 0.32
SHMT2-208ENST00000553868 PCP11498 1178 aaKnown RBP17.02■□□□□ 0.32
SHMT2-208ENST00000553868 RPS6KB1P23443 525 aa17.02■□□□□ 0.32
SHMT2-208ENST00000553868 HAND2P61296 217 aa17.02■□□□□ 0.32
SHMT2-208ENST00000553868 SBK1Q52WX2 424 aa17.02■□□□□ 0.32
Retrieved 100 of 20,778 RNA–protein pairs in 31 ms